BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482377
Length=744
Score E
Sequences producing significant alignments: (Bits) Value
AT2G34340.1 | Symbols: | Protein of unknown function, DUF584 |... 817 0.0
> AT2G34340.1 | Symbols: | Protein of unknown function, DUF584
| chr2:14488786-14489602 REVERSE LENGTH=817
Length=817
Score = 817 bits (442), Expect = 0.0
Identities = 583/647 (90%), Gaps = 25/647 (4%)
Strand=Plus/Plus
Query 16 CTTCGTCTTCTCTCTTCCC--TATATAAAACCCTTCATTTTGTTTAG---AGATTAAGAT 70
|||| |||||||||||||| ||||||||||||||||| |||||||| || |||||||
Sbjct 25 CTTCTTCTTCTCTCTTCCCTATATATAAAACCCTTCATGTTGTTTAGATCAGGTTAAGAT 84
Query 71 CATTTGGAGTCTCTCCAAACCCTAATATCAATATTTTCAATC-CAT-ACTAATAAAA-CC 127
||||| ||||||||||||||||||||||||| ||| || ||| ||| ||||| |||| |
Sbjct 85 CATTTTGAGTCTCTCCAAACCCTAATATCAA-ATTCTC-ATCTCATAACTAACAAAAGCA 142
Query 128 TTCC-AAATCTTCTCTGTAAATGGCGGAGGAATTCGATGAATCTGAGATAGTGTTCTCCG 186
| || |||| |||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 143 TCCCAAAAT-TTCT-AGTAAATGGCGGAGGAATTCGATGAATCTGAGGTAGTGTTCTCCG 200
Query 187 ACGGTTTTAGCTCCGTTCACCATAAAGAGAACAAGAAGCGCCTGTTTGGTTCCGATATGG 246
| ||||| |||||||||| ||||||||||||| |||| |||||||||||||| |||||||
Sbjct 201 ATGGTTTAAGCTCCGTTCTCCATAAAGAGAACGAGAATCGCCTGTTTGGTTCTGATATGG 260
Query 247 AGATGAAGAAGAAGAGGCGGATCAAGATGACGACGACGGAGAA-G-G-CGTTGTCGAGTT 303
||| |||||||| |||||||||||||| ||||||||||||||| | | |||||||||| |
Sbjct 261 AGAGGAAGAAGACGAGGCGGATCAAGAGGACGACGACGGAGAAGGCGTCGTTGTCGAGCT 320
Query 304 CGCTTCCGGTGAATATTCCAGAGAACATGTTTCGAAGGTACGTTGGAAAAGAGGAGGATG 363
|||||||||||| ||| || |||||||| ||||| ||||||||||| |||||||||||||
Sbjct 321 CGCTTCCGGTGAGTATCCCTGAGAACATCTTTCGGAGGTACGTTGGGAAAGAGGAGGATG 380
Query 364 ATTACTCCA-AGGAGGAATATTCCG-A--CGTAGGAGAGATGGTTCCGCCGCATATTATG 419
| |||| || ||||||||||||||| | | |||||||||| |||||||||||||||||
Sbjct 381 AATACT-CAGAGGAGGAATATTCCGAAGGAGGAGGAGAGATGATTCCGCCGCATATTATG 439
Query 420 GTCGGACGGAGGATTCAAGGAGGACAAATGGCTTTTTCCGTTTGTTCAGGTAGCGGAAGG 479
||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 440 ATCGGACGGAGGATCCAAGGAGGACAAATGGCGTTTTCCGTTTGTTCAGGTAGTGGAAGG 499
Query 480 ACTCTTAAGGGAAGAGATCTGAGCCGGGTTCGGAATTCGGTTCTTAGGTTAACCGGTTTT 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 500 ACTCTTAAGGGAAGAGATCTGAGCCGGGTTCGGAATTCGGTTCTTAGGTTAACCGGTTTT 559
Query 540 TTGGAGGCTTGAACCGTTACCGGTTTGCCATATTTTC-TCATCTTTTCCCAACTCttttt 598
|||||||||||||||||||||||||||||||| || | |||||||||||||||||||||
Sbjct 560 TTGGAGGCTTGAACCGTTACCGGTTTGCCATACTT-CATCATCTTTTCCCAACTCTTTTG 618
Query 599 tttttttGCATATTAAGGAAAATTGCAAGTGT-TCCC-GTGTTGTTT 643
||||||||||||||| |||||||||| |||| |||| |||||||||
Sbjct 619 TTTTTTTGCATATTACGGAAAATTGCTAGTGGATCCCCGTGTTGTTT 665
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36118351693
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5