BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482381
Length=1422
Score E
Sequences producing significant alignments: (Bits) Value
AT2G34360.1 | Symbols: | MATE efflux family protein | chr2:145... 2008 0.0
AT5G52450.1 | Symbols: | MATE efflux family protein | chr5:212... 1284 0.0
> AT2G34360.1 | Symbols: | MATE efflux family protein | chr2:14507294-14510231
FORWARD LENGTH=1443
Length=1443
Score = 2008 bits (1087), Expect = 0.0
Identities = 1297/1395 (93%), Gaps = 28/1395 (2%)
Strand=Plus/Plus
Query 1 ATGACGGAGGAGAGAGAGGATATGTTGTCGTGGCCTCTGATCGGAGAGAAAAAGGAGAGA 60
|||| |||||||||||||||||||||||| ||||||||||||||||||||| || |||||
Sbjct 1 ATGAGGGAGGAGAGAGAGGATATGTTGTCATGGCCTCTGATCGGAGAGAAAGAGAAGAGA 60
Query 61 AGTAGATTAGTAAAGGAGGAAGTGAAGAAGCAGCTACTGTTGTCTGGGCCACTAATCGCA 120
|||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 61 AGTAGATTTGTAAAGGAGGAAGTGGAGAAGCAGCTACTGTTGTCTGGACCACTAATCGCA 120
Query 121 GTGAGTCTTCTTCAGTTTTGTCTGCAAATAATCTCAGTCATGTTCGTCGGACATCTTGGC 180
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 121 GTGAGTCTTCTTCAGTTTTGTCTGCAAATAATCTCAGTCATGTTCGTCGGCCATCTTGGC 180
Query 181 TCTCTTCCTCTTTCTGCCGCCTCCATTGCCACCTCCTTCGCCTCCGTCACCGGCTTCACC 240
||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 181 TCTCTTCCTCTATCCGCCGCCTCTATTGCCACCTCCTTCGCCTCCGTCACCGGCTTCACC 240
Query 241 TTCCTTATGGGAACAGCAAGTGCGTTGGACACAGTTTGTGGTCAATCGTACGGAGCAAAA 300
||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 241 TTCCTCATGGGAACAGCAAGTGCGATGGACACAGTTTGTGGTCAATCGTACGGAGCAAAA 300
Query 301 ATGTACGGAATGTTAGGCATACAGATGCAAAGAGCAATGCTTGTTCTTACTCTTTTCTCT 360
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 301 ATGTACGGTATGTTAGGCATACAGATGCAAAGAGCAATGCTTGTTCTTACTCTTTTATCT 360
Query 361 ATTCCTCTCTCCATCGTTTGGGCCAACACAGAGCACTTCCTTGTCTTCTTCGGCCAAGAT 420
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 361 GTTCCTCTCTCCATCGTTTGGGCCAACACAGAGCACTTCCTGGTCTTCTTCGGCCAAGAC 420
Query 421 AAGTCCATTGCACACCTCTCTGGCTCCTACGCCAGATTCATGATCCCTAGCATCTTCGCC 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 AAGTCCATTGCACACCTCTCTGGCTCCTACGCCAGATTCATGATCCCTAGCATCTTCGCC 480
Query 481 TACGGTCTTCTTCAATGTCTCAACAGGTTTTTGCAGGCGCAGAACAATGTGTTTCCTGTG 540
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 481 TACGGTCTTCTTCAATGTCTCAACAGGTTTTTGCAGGCGCAGAACAATGTAATTCCTGTG 540
Query 541 GTGGTTTGTTCTGGAGTCACCACTTCTCTTCACGTGATCATCTGTTGGGCCTTGGTGTTG 600
|| | ||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 541 GTTATCTGTTCTGGAGTCACCACTTCTCTTCACGTGATCATCTGTTGGGTCTTGGTGTTG 600
Query 601 AAATCTGGTTTAGGGTTTAGAGGAGCTGCTGTGGCGAATGCGGTATCGTACTGGCTTAAT 660
|||||||||||||||||||||||||||||||| || |||||| | ||||| ||||| |||
Sbjct 601 AAATCTGGTTTAGGGTTTAGAGGAGCTGCTGTCGCTAATGCGATCTCGTATTGGCTCAAT 660
Query 661 GTCATTCTCTTGTCGTGTTACGTCAAGTTTTCGTCTTCTTGCTCATTGACCTGGACTGGT 720
||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |||
Sbjct 661 GTCATTCTCTTGTCGTGTTACGTCAAGTTTTCGCCTTCTTGCTCCCTGACCTGGACCGGT 720
Query 721 TTCTCTAAAGAGGCTCAGCACGATATCATCCCTTTTATGAAGCTAGCTATTCCTTCTGCA 780
|||||||| || |||| || ||||||||||||||||||||| |||| |||||||||||||
Sbjct 721 TTCTCTAAGGAAGCTCGGCGCGATATCATCCCTTTTATGAAACTAGTTATTCCTTCTGCA 780
Query 781 ATTATGGTTTGC---TTAGAGATGTGGTCCTTTGAGCTTTTGGTTCTCTCGTCAGGACTT 837
||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 781 TTTATGGTTTGCAGCTTAGAGATGTGGTCATTTGAGCTTTTGGTTCTCTCGTCAGGACTT 840
Query 838 CTTCCGAACCCGGTTCTAGAAACTTCTGTCCTTGCAATCTGCCTTAATACATCAGGAACA 897
||||||||||||||||||||||||||| | | || | | | | |||
Sbjct 841 CTTCCGAACCCGGTTCTAGAAACTTCT-T----G---TC--C-T-----C----G-AACC 879
Query 898 GTCTGGATGATCCCGTTTGGCCTCAGTGGCGCCGCAAGCACAAGGGTGTCAAATGAGTTA 957
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 880 GTCTGGATGATCCCGTTTGGCCTTAGTGGCGCCGCTAGCACAAGGGTGTCAAATGAGTTA 939
Query 958 GGAGCAAGAAATCCGAAAGGGGCTAAGCTTGCGGTTCGCGTGGTCTTGAGCTTTTCCATC 1017
||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 940 GGATCAGGGAATCCGAAAGGGGCTAAGCTTGCGGTTCGCGTGGTCTTGAGCTTTTCCATC 999
Query 1018 ATAGAGAGTATACTAGTTGGATCGGTTTTGATACTGATAAGGAAGATCTGGGGATTCGCT 1077
|||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||
Sbjct 1000 GTAGAGAGTATACTAGTTGGAACGGTCTTGATACTTATAAGGAAGATCTGGGGATTCGCA 1059
Query 1078 TACAGTAGTGACCCCGAAGTAGCCAGATATGTAGCCTCTATGTTGCCGATTCTTGCCTTA 1137
|||||||||||||| ||||||| ||| |||||||||| |||||||||||||||||||||
Sbjct 1060 TACAGTAGTGACCCGGAAGTAGTCAGCCATGTAGCCTCGATGTTGCCGATTCTTGCCTTA 1119
Query 1138 GGTCACTCCCTAGATAGCTTTCAAAGCGTTCTTTCAGGGGTTGCTAGAGCATGTGGATGG 1197
||||| ||||| || ||||| |||| |||||||||||||||||| |||| ||||||||||
Sbjct 1120 GGTCATTCCCTGGACAGCTTCCAAACCGTTCTTTCAGGGGTTGCGAGAGGATGTGGATGG 1179
Query 1198 CAGAAGCTAGGCGCTTTTGTGAATCTTGGATCATATTATCTTGTCGGAGTTCCGTTCGGT 1257
|||||| |||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1180 CAGAAGATAGGAGCATTTGTGAATCTTGGATCATATTATCTTGTCGGAGTTCCGTTCGGT 1239
Query 1258 TTGTTACTCGGTTTTCACTTTCACGTCGGTGGTCGGGGGCTTTGGTTGGGAATTATATGT 1317
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1240 TTATTACTTGGTTTTCACTTTCACGTCGGTGGTCGGGGGCTTTGGTTGGGAATTATATGT 1299
Query 1318 GCACT-AGTCGTTCAAGGTGTATGTCTTTCCCTCATCACCTTTTTTACAAATTGGGATGA 1376
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1300 GCACTCA-TCGTTCAAGGTGTATGTCTTTCCCTCATCACCTTTTTTACAAATTGGGATGA 1358
Query 1377 AGAGGT-AA-AAAGC 1389
|||||| || |||||
Sbjct 1359 AGAGGTCAAGAAAGC 1373
> AT5G52450.1 | Symbols: | MATE efflux family protein | chr5:21288898-21291862
REVERSE LENGTH=1718
Length=1718
Score = 1284 bits (695), Expect = 0.0
Identities = 1141/1351 (84%), Gaps = 51/1351 (4%)
Strand=Plus/Plus
Query 55 GAGAGAAGTAGATTAGTAAAGGAGGAAGTGAAGAAGCAGCTACT-G-TTGTCTGGGCCAC 112
|||| |||||| | || ||||| |||||||||||||||||| | | || || || ||||
Sbjct 168 GAGAAAAGTAG--T-GTCAAGGAAGAAGTGAAGAAGCAGCTA-TGGCTT-TCAGGCCCAC 222
Query 113 TAATCGCAGTGAGTCTTCTTCAGTTTTGTCTGCAAATAATCTCAGTCATGTTCGTCGGAC 172
| ||||| ||||||||||||||||||||||| ||| | ||||| ||||||||||| || |
Sbjct 223 TCATCGCCGTGAGTCTTCTTCAGTTTTGTCTACAAGTTATCTCCGTCATGTTCGTTGGCC 282
Query 173 ATCTTGGCTCTCTTCCTCTTTCTGCCGCCTCCATTGCCACCTCCTTCGCCTCCGTCACCG 232
||||||||||||||||||| || ||||| ||||| |||||||| ||||||||||||||||
Sbjct 283 ATCTTGGCTCTCTTCCTCTCTCCGCCGCATCCATCGCCACCTCTTTCGCCTCCGTCACCG 342
Query 233 GCTTCACCTTCCTTATGGGAACAGCAAGTGCGTTGGACACAG-TTTGTGGTCAATCGTAC 291
| |||| |||||| |||||||||||||||||||| || || | ||||||| ||| |||||
Sbjct 343 GTTTCAGCTTCCTCATGGGAACAGCAAGTGCGTTAGATAC-GCTTTGTGGCCAAGCGTAC 401
Query 292 GGAGCAAA-AATGTACGGAATGTTAGGCATACAGATGCAAAGAGCAATGCTTGTTCTTAC 350
|||||||| || ||||||||||||||| ||||| ||||||||||| ||| ||||||||||
Sbjct 402 GGAGCAAAGAA-GTACGGAATGTTAGGAATACAAATGCAAAGAGCTATGTTTGTTCTTAC 460
Query 351 TCTTTTC-TCTATTCCTCTCTCCATCGTTTGGGCCAACACAGAGCA-CTTCCTTGTCTTC 408
| | | |||||||||||||||||| ||||||| ||||||||||| ||| || ||||||
Sbjct 461 AC-TAGCTTCTATTCCTCTCTCCATCATTTGGGCTAACACAGAGCACCTT-CTCGTCTTC 518
Query 409 TTCGGCCAAGATAAGTCCATTGC-ACACCTCTCTGGCTCCTACGCCAGATTCATGATCCC 467
|| || ||| | || |||||||| ||| ||| ||||||||||||| | ||||||||||||
Sbjct 519 TTTGGACAAAACAAATCCATTGCTACA-CTCGCTGGCTCCTACGCAAAATTCATGATCCC 577
Query 468 TAGCATCTTCGCCTACGGTCTTCTTCAATG-TCTCAACAGGTTTTTGCAGGCGCAGAACA 526
||||||||||||||||||||||||||||| | | |||||||| |||||||| || ||||
Sbjct 578 AAGCATCTTCGCCTACGGTCTTCTTCAATGCTTT-AACAGGTTCTTGCAGGCCCAAAACA 636
Query 527 ATGTGTTTCCTGTGGTGGTT-TGTTCTGGAGTCACCACTTCTCTTCACGTGATCATCTGT 585
|||||||||||||||| || || |||||||| || |||||||| || || || | |||
Sbjct 637 ATGTGTTTCCTGTGGTT-TTCTGCTCTGGAGTAACAACTTCTCTACATGTCCTCCTTTGT 695
Query 586 TGGGCCTTGGTGTTGAAATCTGGTTTAGGGTTT-AGAGGAGCTGCTGTGGCGAA-TGCGG 643
|||| |||||| || |||||||||||||||||| | |||||||||| | || || | |
Sbjct 696 TGGGTCTTGGTTTTCAAATCTGGTTTAGGGTTTCA-AGGAGCTGCTCTTGCCAACTCCAT 754
Query 644 TATCGTACTGGCTTAATGTCATTCTCTTGT-CGTGTTACGTCAAGTTTTCGTCTTCTTGC 702
| ||||| |||||||||||| ||||||||| | |||||||||||||||||| ||||||||
Sbjct 755 T-TCGTATTGGCTTAATGTCGTTCTCTTGTTC-TGTTACGTCAAGTTTTCGCCTTCTTGC 812
Query 703 TCATTGACCTGGACTGGTTTCTCTAAAGAGGCTC-AGCACGATATCATCCCTTTTATGA- 760
||| | || ||||| ||||||||||| ||||||| | | ||||||| |||||||| |||
Sbjct 813 TCACTAACTTGGACCGGTTTCTCTAAGGAGGCTCTA-CGCGATATCCTCCCTTTTCTGAG 871
Query 761 AGCTAGCTATTCCTTCTGCAATTATGGTTTGCTTAGAGATGTGGTCCTTTGAGCTTTTGG 820
| |||||| ||||||||||| ||||||| ||||||||||||||||||||||| ||||| |
Sbjct 872 A-CTAGCTGTTCCTTCTGCACTTATGGTCTGCTTAGAGATGTGGTCCTTTGAACTTTTAG 930
Query 821 TTCTCTCGTCAGGACTTCTTCCGAACCCGGTTCTAGAAACTTCTGTCCT-TGCAATCTGC 879
|||||| |||||||||||||| ||||||||||||||||||||||| || | ||||||||
Sbjct 931 TTCTCTTATCAGGACTTCTTCCAAACCCGGTTCTAGAAACTTCTGTTCTCT-CAATCTGC 989
Query 880 CTTAATACATCAGGAACAGTCTGGATGATCCCGTTTGGCCTCAGTGGCGCCGCAAGCACA 939
|||||||||||||||||| | ||||||||||| ||||| || |||||||| ||||||||
Sbjct 990 CTTAATACATCAGGAACAATGTGGATGATCCCATTTGGTCTAAGTGGCGCTGCAAGCACG 1049
Query 940 AGGGTGTCAAATGAGTTAGGAGCAAGAAATCCGAAAGGGGCTAAGCTTGCGGTTCGCGTG 999
||| | |||||||| |||||||| | || ||||||| ||||||||||||||| || |||
Sbjct 1050 AGGATCTCAAATGAATTAGGAGCGGGTAACCCGAAAGTGGCTAAGCTTGCGGTGCGTGTG 1109
Query 1000 GTC-TTGAGCTTTTCCA-TCAT-AGAGAGTATACTAGTT-GGATCGGTTTTGATACTGAT 1055
||| || || || | | | | ||| |||||| | | | ||||| || |||||| ||||
Sbjct 1110 GTCATTT-GCATTGC-AGT-AGCAGAAAGTATAGT-GATCGGATCAGTCTTGATATTGAT 1165
Query 1056 AAGGAAGATCTGGGGATTCGCTTACAGTAGTGACCCCGAAGTAGCCAGATATGTAGCCTC 1115
|||||| || |||||||| ||||| |||||||| | ||||||| ||| || ||||||||
Sbjct 1166 AAGGAATATATGGGGATTAGCTTATAGTAGTGAACTAGAAGTAGTCAGCTACGTAGCCTC 1225
Query 1116 TATGTTGCCGATTCTTGCCTTAGGTCACTCCCTAGATAG-CTTTCAAAGCGTTCTTTCAG 1174
||| |||| ||||| |||||||| | | ||||| || ||| ||| ||||||| ||||
Sbjct 1226 GATGATGCCAATTCTCGCCTTAGGAAATTTTCTAGACAGTCTT-CAATGCGTTCTCTCAG 1284
Query 1175 GGGTTGCTAGAGCATGTGGATGGCAGAAGCTAGGCGCTTTTGTGAATCTTGGATCATATT 1234
|||||||||||| |||||||||||||||| |||| || | | |||||||| |||||||
Sbjct 1285 GGGTTGCTAGAGGATGTGGATGGCAGAAGATAGGAGCAATCATTAATCTTGGTTCATATT 1344
Query 1235 ATCTTGTCGGAGTTCCGTTC-GGTTTGTTACTCGGTTTTCACTTTCACGTCGGTGGTCGG 1293
||||||| |||||||| ||| || |||||||| | ||||||||||||||| |||||||||
Sbjct 1345 ATCTTGTTGGAGTTCC-TTCAGGATTGTTACTTGCTTTTCACTTTCACGTTGGTGGTCGG 1403
Query 1294 GGGCTTTGG-TTGGGAATTATATGTGCACTAGTCGTTCAAGGTGTATG-TCTTTCCCTCA 1351
||||||||| |||| ||| |||||||| || || ||||||| | | || |||| ||||
Sbjct 1404 GGGCTTTGGCTTGG-AATCATATGTGCCCTCGTTGTTCAAGTTTT-TGGTCTTGGCCTCG 1461
Query 1352 TCACCT-TTTTTACAAATTGGGATGAAGAGG 1381
|||| | ||||||||||||||||||||||||
Sbjct 1462 TCAC-TATTTTTACAAATTGGGATGAAGAGG 1491
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70079960820
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5