BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482394
Length=1691
Score E
Sequences producing significant alignments: (Bits) Value
AT2G34380.1 | Symbols: | Putative adipose-regulatory protein (... 2032 0.0
AT1G29760.1 | Symbols: | Putative adipose-regulatory protein (... 505 7e-142
> AT2G34380.1 | Symbols: | Putative adipose-regulatory protein
(Seipin) | chr2:14512707-14514516 FORWARD LENGTH=1810
Length=1810
Score = 2032 bits (1100), Expect = 0.0
Identities = 1314/1416 (93%), Gaps = 19/1416 (1%)
Strand=Plus/Plus
Query 289 GACT-GATGTCGATAAAAAGGGGGAAGACTTTGAAGTTATTGACTCGTGTATCGATACGG 347
|||| ||| ||| ||||| || |||||||||||||| ||||||||||||| ||||||||
Sbjct 380 GACTCGATTTCG-GAAAAA-GGAGAAGACTTTGAAGTAATTGACTCGTGTACCGATACGG 437
Query 348 AGAAGAATATGGATGTGAATGATTCGGGTCGGGTTGACCCGTTTACAGCAACCACCTTGA 407
|||||||||||| || |||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 438 AGAAGAATATGGGTGAGAATGATTCGGGTCGGGTCGACCCGTTTACAGTGACCACCTTGA 497
Query 408 ATGATGAGCGAGGTGAGGTTTATACCGGACTGGAATCTCCTTCGAGGGATTGGTCTTTGA 467
||||||||||||||||| |||||||||||| ||||| | |||||| ||||||||||||||
Sbjct 498 ATGATGAGCGAGGTGAGATTTATACCGGACCGGAATATACTTCGACGGATTGGTCTTTGA 557
Query 468 CCAGGCTAGTGATCAGGTCAATTGAATTTCAAGTTAGTTTGATGATTAGCTTTATAAGGT 527
| || ||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 558 CGAGTCTAGTGATCAGGTCAATTGAATTTCAAGTTAGTTTGATGATTACCTTTATAAGGT 617
Query 528 TTCCTCCATGGTTAATTAGCAACTGCTTGAGCTTTGTTTTTGATCCATATCGAACAATGA 587
||||||||||||||||||| || || |||||||||||||||||||| |||||||||||||
Sbjct 618 TTCCTCCATGGTTAATTAGTAAATGTTTGAGCTTTGTTTTTGATCCGTATCGAACAATGA 677
Query 588 GGCGTGGTAGACGCTATTTAGTATCGTGGATTGTAGATTTATGTGATTCAGGGTTAAAAT 647
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 678 GGCGTGGTAGACGCTATTTAGTATCGTGGATTGTTGGGTTATGTGATTCAGGGTTAAAAG 737
Query 648 ATGATAAGCCTGTGTTGGAGGTTGTGCGGAG-GTTAGCATGGGGTTTGTTTTGTGCTGTT 706
|||||||||||||||||||| ||||||| || | || |||||||||||||||||||||||
Sbjct 738 ATGATAAGCCTGTGTTGGAGCTTGTGCGTAGAG-TAACATGGGGTTTGTTTTGTGCTGTT 796
Query 707 TATGTGGGGATCATGTTGTTTACCTTGTTGGTTTCTGCGTTTATGATTAGTGGTTTTGTG 766
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 797 TATGTGGGGATCATGTTGTTTGCCTTGTTGGTTTCTGCGTTTATGATTAGTGGTTTTGTG 856
Query 767 ATTA-CTCATTTGGCTCATGAACCACTTGTAATCAAGGAGAGTTTGAATTTTGATTATAC 825
|||| || |||||||||||||||||||||| ||||| ||||| |||||||||||||| ||
Sbjct 857 ATTACCT-ATTTGGCTCATGAACCACTTGTTATCAAAGAGAGCTTGAATTTTGATTACAC 915
Query 826 CAAGAGTAGTCCAGAAGCTTATGTCCCCATAAGTTCATGTGCTGGTATTGCCTTTGATTT 885
|||||||||||| ||||||||||| ||||||||||||||||||||| ||||||||| |||
Sbjct 916 CAAGAGTAGTCCTGAAGCTTATGTGCCCATAAGTTCATGTGCTGGTGTTGCCTTTGGTTT 975
Query 886 GAGTGGCAAGGAGAGTATTGAAACCGGGAAGATCAGAGGGTTGAAGGACAGGACAGAGAT 945
|||||||||||||||||||||||| |||||| ||| ||||||||| ||||||||||||||
Sbjct 976 GAGTGGCAAGGAGAGTATTGAAACTGGGAAGGTCAAAGGGTTGAAAGACAGGACAGAGAT 1035
Query 946 CACTGTCTCCATGACATTGCCTGAGTCTGAGTACAATAG-AATCCTTGGGATGTTTCAGG 1004
||||| || ||||||||||||||||| ||||||||||| ||| || |||||||||||||
Sbjct 1036 AACTGTGTCAATGACATTGCCTGAGTCCGAGTACAATAGAAAT-CTCGGGATGTTTCAGG 1094
Query 1005 TTCGGGTGGACTTCTTATCCCCAAGTGGTCAAT-TGCTTGCTAGTTCAAGGAGGCCGTGT 1063
|||||||||||||||||||| | ||||||| || ||||||||||||||||| ||||||||
Sbjct 1095 TTCGGGTGGACTTCTTATCCGCGAGTGGTC-ATGTGCTTGCTAGTTCAAGGCGGCCGTGT 1153
Query 1064 ATGGTAAGATTTAGAAGCGAGCCTATCCGTCTTGTCCAGACTTTGCTAAAGATTGCTCCG 1123
||||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1154 ATGGTAAAATTTAGTAGCGAGCCTATACGTCTTGTCCAGACTTTGCTAAAGATTGCTCCG 1213
Query 1124 CTTGTCACAGGCTATGTCTCTGAAATTCAAACCTTGAACTTGAAGCTTAAAGGCTTGGTC 1183
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1214 CTTGTCACGGGCTATGTCTCTGAAATCCAAACCTTGAACTTGAAGCTTAAAGGCTTGGTC 1273
Query 1184 GAAAAGGACATTATTCCTACTGCTTGCTTGAAGGTAATGATTGAACAACGGGCAGAGTTT 1243
||||||||||||||||||||||||||||||||| | ||||| |||||||| |||||||||
Sbjct 1274 GAAAAGGACATTATTCCTACTGCTTGCTTGAAGATCATGATCGAACAACGTGCAGAGTTT 1333
Query 1244 CGTCCTGGAGCAGGTATTCCAGAGATTTACGATGCATCTCTGTTGCTTGAATCCAAACTT 1303
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 1334 CGTCCTGGAGCAGGTATTCCTGAGATTTACGATGCATCTCTGTTCCTTGAATCCAAACTT 1393
Query 1304 CCTTTCTTCAAAAGGATCATATGGAACTGGAGGAAAACtttttttGTCTGGATCAGCATG 1363
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1394 CCTTTCTTGAAAAGGATCATATGGAACTGGAGGAAAACTTTGTTTGTCTGGATCAGCATG 1453
Query 1364 AGTTTGTTCGTTATGGAATTGCTTTTCGTCTTAGTTTTCTTCAGACCTCTGATCATCCCA 1423
||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 1454 AGTTTGTTCATTATGGAATTACTTTTCGCCTTAGTTTTCTTCAGACCTCTGATCATCCCA 1513
Query 1424 AGAACAGGTCAGAGAACACAACAAAGAGATAGAACACATTC--TC-TCAACAACTTAAAT 1480
|||||||||||||||||||||||||||||| |||||||||| || |||||||||| ||
Sbjct 1514 AGAACAGGTCAGAGAACACAACAAAGAGATGGAACACATTCTATCAACAACAACTTATAT 1573
Query 1481 CTTGACAGTCAGGCGGGAAGTAGATGAATCAGTGGTTGACTAGTTGTTGTAACGGTACTT 1540
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1574 CTTGACGGTCAGGCGGGAAGTAGATGAATCAGTGGTTGACTAGTTGTTGTAACGGTACTT 1633
Query 1541 ACACTTACTGTAACTTTAGTTTCTT-CTTCAACCAAAATTGTAATATCTTGCCTGCTAAT 1599
|||||||||||||||||| | |||| |||||||| ||||||||||||| || ||||||||
Sbjct 1634 ACACTTACTGTAACTTTAATATCTTTCTTCAACCGAAATTGTAATATCCTGTCTGCTAAT 1693
Query 1600 TGAAGTCGCATTGTCCGAATAAACTTTTAAGTT---T-CTTGAATCGTTTTTATAAGTCA 1655
| |||||||||||||| |||| |||| |||||| | ||||||||||||| |||||||
Sbjct 1694 TAAAGTCGCATTGTCCAAATAGACTTATAAGTTACGTTCTTGAATCGTTTTCATAAGTCG 1753
Query 1656 CAATGATACAGACTTCTAATTTGATTTACAGTGTAC 1691
|||||||||||||| ||||||||||||||||||||
Sbjct 1754 GAATGATACAGACTTTTAATTTGATTTACAGTGTAC 1789
Score = 287 bits (155), Expect = 3e-76
Identities = 234/270 (87%), Gaps = 13/270 (5%)
Strand=Plus/Plus
Query 37 ATCATCAAAC-CCTATTAGCTGCGATCGATTCCTAGACGCACCAGACGAATTCTTTTACG 95
|||||| ||| | || |||||||||||||||||||||||| |||||||||||||||||
Sbjct 91 ATCATC-AACACATAGCAGCTGCGATCGATTCCTAGACGCAGAAGACGAATTCTTTTACG 149
Query 96 ACAGCTTCGCGACCCACTACGATTCCGACTGCCTCAATTCGTCTCCCGCCGCGAATATCC 155
| |||||| ||| ||||| | |||||||||||||||||||||| |||||||| |||
Sbjct 150 ATAGCTTCTCGAACCACT---A---CGACTGCCTCAATTCGTCTCCCCCCGCGAATCTCC 203
Query 156 TTCGCCGAAGGTTGGTTATGGATACGGATTCGTCTTCTTGCTCTTCTAC-TA--CATTGA 212
||||||||||||| ||||||||||||||| ||||||| ||||||||| | |||||
Sbjct 204 GTCGCCGAAGGTTGCCTATGGATACGGATTCTTCTTCTTCCTCTTCTACGTCTTCATTGG 263
Query 213 AATCTTTTGAGAAACGGAGCTCCGTGGGAGAAAATGACGAGCTTGAGGTTTCTATAA-GG 271
|||||| ||||||||||||| |||||||||||||||||||||||||||||||| || ||
Sbjct 264 AATCTTGTGAGAAACGGAGCACCGTGGGAGAAAATGACGAGCTTGAGGTTTCTCTAGTGG 323
Query 272 AATTTCGAAACAATTGAGACTGATGTCGAT 301
| ||||||||||||||| | ||||||||||
Sbjct 324 A-TTTCGAAACAATTGAAATTGATGTCGAT 352
> AT1G29760.1 | Symbols: | Putative adipose-regulatory protein
(Seipin) | chr1:10422331-10424327 FORWARD LENGTH=1842
Length=1842
Score = 505 bits (273), Expect = 7e-142
Identities = 617/776 (80%), Gaps = 52/776 (7%)
Strand=Plus/Plus
Query 686 TGGGGTTTGTTTTGTGCTGTTTATGTGGGGATCATGTTGTTTACCTTGTTGGTTTCTG-C 744
|||||| ||||||| ||||||||||| || || |||||||| |||||||||||| | |
Sbjct 828 TGGGGTATGTTTTGGGCTGTTTATGTAGGCATTGTGTTGTTTGGCTTGTTGGTTTC-GTC 886
Query 745 GTTTATGATTAGTGGTTTTGTGATT-ACTCATTTGGCTCATGAACCACTTGTA-ATCAAG 802
| |||||||| |||||| ||||||| || | | | || || ||||| ||| | |||||
Sbjct 887 GCTTATGATTGGTGGTTATGTGATTAAC-CGTATAGCGGATAAACCATTTG-AGGTCAAG 944
Query 803 GAGAGTTTGAATTTTGATTATACCAAGAGTAGTCCAGAAGCTTATGTCCCCATAAGTTCA 862
|||| |||||||||||||| ||||||| |||||||||||| ||||| |||||| ||
Sbjct 945 GAGACCTTGAATTTTGATTACACCAAGAATAGTCCAGAAGCATATGTGCCCATATCCTCG 1004
Query 863 TGTGCTGGTATTGCCTTTGATTTG-AGTGGCAAGGAGAGTATTGAAACCG-GGAAGATCA 920
||||||||| ||| | ||| | ||| ||||||| |||| ||||| | ||||||||
Sbjct 1005 TGTGCTGGTGTTGAATGTGA-GGGAAGTTGCAAGGAAAGTAATGAAA-TGTCGAAGATCA 1062
Query 921 GAGGG-TT--GA---A------G-GA-CAG--GACAGAGATCACTGTCTCCATGACATTG 964
| ||| || || | | || ||| | ||| |||| | | || ||||||||
Sbjct 1063 G-GGGTTTGCGAGTTATCCCTCGAGACCAGAAGTTAGATATCATTCTTTCAATGACATTA 1121
Query 965 CCTGAGTCTGAGTACAAT-AGAATCCTTGGGATGTTTCAGGTTCGGGTGGACTTCTTATC 1023
|||||||||| ||||||| | ||| || || |||||||||||||||||||||||||||||
Sbjct 1122 CCTGAGTCTGCGTACAATAAAAAT-CTCGGCATGTTTCAGGTTCGGGTGGACTTCTTATC 1180
Query 1024 CCCA-AGTGGTCAATTGCTTGCTAGT-TCAAGGAGGCCGTGTATGGTAAGATTTAGAAGC 1081
| ||||||| | |||||||| | |||| | ||||| ||| ||||||| |||||
Sbjct 1181 TGTGGA-TGGTCAAACGATTGCTAGTAT-AAGGCGTCCGTGCATGTTAAGATTCAGAAGT 1238
Query 1082 GAGCCTATCCGTCTTGTCCAGAC-TT-TGCTAAAGATTGCTCCGCTT-GTCACAGGCTAT 1138
|||||||| |||||||| ||||| || | | |||| | | |||| || || ||||| |||
Sbjct 1239 GAGCCTATTCGTCTTGTTCAGACATTCTTC-AAAG-TGGTTCCG-TTAGTGACAGGATAT 1295
Query 1139 GTCTCTGAAATTCAAACCTTGAACTTGAAGCTT-AAAGGCTTGGTCGAAAAGGACATTAT 1197
|||||||| || |||||||||| ||||||| || |||||||| || ||||||||||||
Sbjct 1296 GTCTCTGAGATCCAAACCTTGAGCTTGAAG-TTGAAAGGCTTTGTAGAAAAGGACATTC- 1353
Query 1198 TCCTACTGCTTGCTTGAAGGTAATGATTGAACAACGGGCAGAGTTTCGTCCTGGAGCAGG 1257
|| ||||||||||| ||| |||| || |||||||||||||| ||||| || ||||||||
Sbjct 1354 -CC-ACTGCTTGCTTAAAGATAATAATCGAACAACGGGCAGAATTTCGACCCGGAGCAGG 1411
Query 1258 TATTCCAGAGATTTACGATGCATCTCTGTTGCTTGAATCCAAACTTCCTTTCTTCA-AAA 1316
|||||||||| | ||||||||||| || | | |||||||| ||||| ||||||| |||
Sbjct 1412 TATTCCAGAGCTGTACGATGCATCCCTATCGGTTGAATCCGGTCTTCCCTTCTTCAGAAA 1471
Query 1317 GGATCATATGGAACTGGAGGAAAACtttttttGTCTGGATCAGCATGAGTTTGTTCGTTA 1376
|| |||||||| ||| |||| ||||| || |||||||||||||||||||||||| |||
Sbjct 1472 A-ATTATATGGAAATGGCGGAAGACTTTGTTCGTCTGGATCAGCATGAGTTTGTTCATTA 1530
Query 1377 TGGAATTGCTTTTCGTC-TTAGTTT-TCT-TCAGACCTCTGATCATCCCAAGAACA 1429
||||||||||||| | || |||| | | | |||||||| |||||||||||||||
Sbjct 1531 CGGAATTGCTTTTCA-CGTTGGTTTGT-TGT-AGACCTCTTATCATCCCAAGAACA 1583
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83583907425
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5