BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482397
Length=1854
Score E
Sequences producing significant alignments: (Bits) Value
AT2G34400.1 | Symbols: | Pentatricopeptide repeat (PPR-like) s... 2843 0.0
> AT2G34400.1 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr2:14516226-14518186 FORWARD LENGTH=1866
Length=1866
Score = 2843 bits (1539), Expect = 0.0
Identities = 1739/1837 (95%), Gaps = 8/1837 (0%)
Strand=Plus/Plus
Query 5 TCAAACCAGAGAAACTAGCTTTCTCCATTTACCGCCAATTCCAATTCTCTCAATTCAAAC 64
||||||||||||||||||| ||||| |||||||||||| | ||| || |||||||||
Sbjct 20 TCAAACCAGAGAAACTAGCGTTCTCGATTTACCGCCAA-T----TTC-CTAAATTCAAAC 73
Query 65 CTAGACAACTCGAAGAAGCACGACGCGGCGATCTTGAGAGAGACTTTCTTTTCCTGTTGA 124
|||||||| | ||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 74 CTAGACAATTTGAAGAAGCACGACGCGGCGATCTCGAGAGGGACTTTCTTTTCCTGTTGA 133
Query 125 AAAAATGCATCTCCGTGAACCAATTGCGAGAGATTCAAGCCCAGATGTTGTTACACTCCG 184
||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 134 AAAAATGTATCTCCGTGAACCAATTGCGACAGATTCAAGCCCAGATGTTGTTACACTCCG 193
Query 185 TCGAGAAACCCAATTTTCTGATTCCCAAGGCCGTCGAACTTGGAGACTTCAATTACGCTT 244
|||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 194 TCGAAAAACCGAATTTTCTGATTCCCAAGGCCGTCGAACTTGGAGACTTCAATTACTCCT 253
Query 245 CTTTTCTCTTGTCCGTCACGGAACAACCAAACCACTACTCTTTCAATTACATGACCCGAG 304
|||||||||| |||||||||||| |||||||||| ||||||||||||||||||| |||||
Sbjct 254 CTTTTCTCTTCTCCGTCACGGAAGAACCAAACCATTACTCTTTCAATTACATGATCCGAG 313
Query 305 GGTTGACCAATATATGGAATGATCACGAAGGTGCTCTGTCTCTGTATCGACGGATGAAGT 364
|||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 314 GGTTGACCAACACATGGAATGATCACGAAGCTGCTCTGTCTCTGTATCGACGGATGAAGT 373
Query 365 TTTCTGGGTTAAAGCCTGATAATTTCACTTATAATTTTGTTTTCATTGCTTGTGGGAAGC 424
|||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||
Sbjct 374 TTTCTGGGTTAAAGCCTGATAAGTTCACTTATAATTTTGTTTTCATCGCTTGTGCGAAGC 433
Query 425 GTGAGGAGATAGGGGTTGGTAGATCTGTTCATTCGTCGTTGTTCAAAGTCGGATTGGAAA 484
|||||||||||| |||||||||||||| || ||||||||||||||||| ||||||||||
Sbjct 434 TTGAGGAGATAGGAGTTGGTAGATCTGTCCACTCGTCGTTGTTCAAAGTTGGATTGGAAA 493
Query 485 GAGACGATCATATAAGTCATTCTTTGATTATGATGTATGCGAAATGTGGTCTGGTGGGTT 544
|||||| |||||||| ||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 494 GAGACGTTCATATAAATCATTCTCTGATTATGATGTATGCGAAATGTGGTCAGGTGGGTT 553
Query 545 ATGCCCGGAAGGTGTTCGATGAAATTACTGACAGAGTTACGGTGTCTTGGAACTCGATGA 604
||||||||||| ||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 554 ATGCCCGGAAGTTGTTCGATGAAATTACTGAGAGAGATACGGTGTCTTGGAACTCGATGA 613
Query 605 TCTCTGGGTATTCTGAGGCGGGTCACGCAAAAGACGCTATGGATTTGTTTAGGAAGATGG 664
||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||
Sbjct 614 TCTCTGGGTATTCTGAGGCGGGTTACGCTAAAGATGCTATGGATTTGTTTAGGAAGATGG 673
Query 665 AGGAGGAAGGATTTGAACCAGATGAGAGGACGTTGGTGAGTATGTTGGGTGCTTG-TGCA 723
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 674 AGGAGGAAGGATTTGAACCAGATGAGAGGACGTTGGTGAGTATGTTGGGTGCTTGCT-CA 732
Query 724 CATTTGGGGGATTTGACAACTGGTAGATTGCTGGAGAAGATAGCTATCACGAAGAAGATC 783
|||||||| ||||||| ||||||||||||||||||| |||| || ||||| |||||||||
Sbjct 733 CATTTGGGTGATTTGAGAACTGGTAGATTGCTGGAGGAGATGGCCATCACCAAGAAGATC 792
Query 784 GGGTTAAGCACCTTTCTCGGGTCTAAGTTGATGAGTATGTATGGAAAATGCGGCGATTTG 843
||||||||||| ||||| |||||||||||||| ||||||||||||||||| || ||||||
Sbjct 793 GGGTTAAGCACGTTTCTGGGGTCTAAGTTGATCAGTATGTATGGAAAATGTGGTGATTTG 852
Query 844 GATTCTGCCAGAAGGGTTTTCAATCAAATGATTAAGAAGGATCGTGTTGCTTGGAATGCT 903
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 853 GATTCTGCCAGAAGGGTTTTCAATCAAATGATTAAGAAGGATCGTGTTGCTTGGACTGCT 912
Query 904 ATGATCACTGTATACTCACAAAATGGGAAGTCGAGTGAGGCTTTTAAACTGTTTTTTGAG 963
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 913 ATGATCACTGTATACTCACAAAATGGGAAGTCAAGTGAGGCTTTTAAACTGTTTTTTGAG 972
Query 964 ATGGAAAAAGCCGGAGTTTCCCCAGACGCGGGCACATTGTCTACGGTTCTGTCTGCTTGT 1023
||||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 973 ATGGAAAAAACCGGAGTTTCACCAGACGCGGGCACATTGTCTACAGTTCTGTCTGCTTGT 1032
Query 1024 GGTTCAGTTGGAGCTCTTGAATTAGGCAAACGAATAGAGACCCACGCATCAGAAATTTCC 1083
||||||||||||||||||||||||||||||| ||| |||||||| ||||||||| |||||
Sbjct 1033 GGTTCAGTTGGAGCTCTTGAATTAGGCAAACAAATTGAGACCCATGCATCAGAACTTTCC 1092
Query 1084 TTGCAACATAACATCTATGTGGCCACAGGACTAGTCGACATGTACGGAAAGTGCGGACAC 1143
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1093 TTGCAACATAATATCTATGTGGCCACAGGACTAGTCGACATGTATGGAAAGTGCGGACGG 1152
Query 1144 ATAGAGGAAGCCCTGAGAGTATTTGAAGCTATGCCAGTGAAAAACGAAGCTACTTGGAAC 1203
|||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1153 GTAGAGGAAGCTCTGAGAGTATTTGAAGCTATGCCAGTGAAAAACGAAGCCACTTGGAAC 1212
Query 1204 GCTATGATAACCGCTTATGCGCATCAAGGACATGCTAAAGAAGCTCTATTGCTATTTGAT 1263
|||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||
Sbjct 1213 GCTATGATAACCGCTTATGCGCATCAAGGACACGCTAAAGAAGCTCTTTTGCTGTTTGAT 1272
Query 1264 CAAATGCCAGTTCCTCCAAGTGATGTTACATTCATAGGAGTGCTCTCTGCTTGTGTGCAC 1323
| |||| ||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 1273 CGAATGTCAGTTCCTCCAAGTGATATAACATTCATAGGAGTGCTCTCTGCTTGTGTGCAC 1332
Query 1324 GCGGGTTTGGTCGATCAGGGCTGTCGATATTTCCATGAGATGAGTTCTTTGTTCGGGTTG 1383
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1333 GCGGGTTTGGTCCATCAGGGCTGTCGATATTTCCATGAGATGAGTTCTATGTTCGGGTTG 1392
Query 1384 GTCCCAAAAATCGAGCATTACACAAACATAATCGATCTCCTGTCTCGTGCGGGGCTGTTA 1443
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1393 GTCCCAAAAATCGAGCATTACACAAACATAATCGATCTCCTGTCTCGTGCGGGGATGTTA 1452
Query 1444 GACGAGGCTTGGGAGTTCATGGAGAGGTTTCCTGGGAAGCCTGATGAGATCATGTTAGCA 1503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1453 GACGAGGCTTGGGAGTTCATGGAGAGGTTTCCTGGGAAGCCTGATGAGATCATGTTAGCA 1512
Query 1504 GCGATCCTTGGAGCGTGTCATAAGAGAAAAGATGTTGCGATCAGAGAGAAGGCGATGAGG 1563
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1513 GCGATCCTTGGAGCATGTCATAAGAGAAAAGATGTTGCGATCAGAGAGAAGGCGATGAGG 1572
Query 1564 ATGTTGATGGAGATGAAAGAGGCGAAAAACGCAGGAAACTATGTAATCTCTTCGAAGGTT 1623
|||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||
Sbjct 1573 ATGTTGATGGAGATGAAAGAGGCGAAGAACGCAGGAAACTATGTAATCTCTTCTAATGTT 1632
Query 1624 TTAGCTGATATGAAGATGTGGGATGAGTCTGCGAAGATGAGGGCGTTGATGCGAGACAGA 1683
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1633 TTAGCTGATATGAAGATGTGGGATGAGTCTGCGAAGATGAGGGCGTTGATGAGAGACAGA 1692
Query 1684 GGCGTTGTTAAGACACCAGGATGCAGCTGGATTGAGATCGATGGTGAGCTAATGGAGTTT 1743
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 1693 GGCGTCGTTAAGACACCAGGATGCAGCTGGATTGAGATCGAGGGTGAGCTAATGGAATTT 1752
Query 1744 CTTGCCGGAAGCGATTATTTACGGTATGGCAGGGAAGATTCAGGTTCGTTGTTTGGTTTG 1803
|||||||||||||||||||||| || ||||||||||||||| |||||||| |||| ||||
Sbjct 1753 CTTGCCGGAAGCGATTATTTACAGTGTGGCAGGGAAGATTCCGGTTCGTTATTTGATTTG 1812
Query 1804 TTGGTGGAGGAGATGAAGAGGGAACGGTATGATTTTG 1840
|||||||||||||||||||||||| ||||||| ||||
Sbjct 1813 TTGGTGGAGGAGATGAAGAGGGAAAGGTATGAATTTG 1849
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91766596260
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5