BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg482397 Length=1854 Score E Sequences producing significant alignments: (Bits) Value AT2G34400.1 | Symbols: | Pentatricopeptide repeat (PPR-like) s... 2843 0.0 > AT2G34400.1 | Symbols: | Pentatricopeptide repeat (PPR-like) superfamily protein | chr2:14516226-14518186 FORWARD LENGTH=1866 Length=1866 Score = 2843 bits (1539), Expect = 0.0 Identities = 1739/1837 (95%), Gaps = 8/1837 (0%) Strand=Plus/Plus Query 5 TCAAACCAGAGAAACTAGCTTTCTCCATTTACCGCCAATTCCAATTCTCTCAATTCAAAC 64 ||||||||||||||||||| ||||| |||||||||||| | ||| || ||||||||| Sbjct 20 TCAAACCAGAGAAACTAGCGTTCTCGATTTACCGCCAA-T----TTC-CTAAATTCAAAC 73 Query 65 CTAGACAACTCGAAGAAGCACGACGCGGCGATCTTGAGAGAGACTTTCTTTTCCTGTTGA 124 |||||||| | ||||||||||||||||||||||| ||||| ||||||||||||||||||| Sbjct 74 CTAGACAATTTGAAGAAGCACGACGCGGCGATCTCGAGAGGGACTTTCTTTTCCTGTTGA 133 Query 125 AAAAATGCATCTCCGTGAACCAATTGCGAGAGATTCAAGCCCAGATGTTGTTACACTCCG 184 ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 134 AAAAATGTATCTCCGTGAACCAATTGCGACAGATTCAAGCCCAGATGTTGTTACACTCCG 193 Query 185 TCGAGAAACCCAATTTTCTGATTCCCAAGGCCGTCGAACTTGGAGACTTCAATTACGCTT 244 |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| | | Sbjct 194 TCGAAAAACCGAATTTTCTGATTCCCAAGGCCGTCGAACTTGGAGACTTCAATTACTCCT 253 Query 245 CTTTTCTCTTGTCCGTCACGGAACAACCAAACCACTACTCTTTCAATTACATGACCCGAG 304 |||||||||| |||||||||||| |||||||||| ||||||||||||||||||| ||||| Sbjct 254 CTTTTCTCTTCTCCGTCACGGAAGAACCAAACCATTACTCTTTCAATTACATGATCCGAG 313 Query 305 GGTTGACCAATATATGGAATGATCACGAAGGTGCTCTGTCTCTGTATCGACGGATGAAGT 364 |||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 314 GGTTGACCAACACATGGAATGATCACGAAGCTGCTCTGTCTCTGTATCGACGGATGAAGT 373 Query 365 TTTCTGGGTTAAAGCCTGATAATTTCACTTATAATTTTGTTTTCATTGCTTGTGGGAAGC 424 |||||||||||||||||||||| ||||||||||||||||||||||| ||||||| ||||| Sbjct 374 TTTCTGGGTTAAAGCCTGATAAGTTCACTTATAATTTTGTTTTCATCGCTTGTGCGAAGC 433 Query 425 GTGAGGAGATAGGGGTTGGTAGATCTGTTCATTCGTCGTTGTTCAAAGTCGGATTGGAAA 484 |||||||||||| |||||||||||||| || ||||||||||||||||| |||||||||| Sbjct 434 TTGAGGAGATAGGAGTTGGTAGATCTGTCCACTCGTCGTTGTTCAAAGTTGGATTGGAAA 493 Query 485 GAGACGATCATATAAGTCATTCTTTGATTATGATGTATGCGAAATGTGGTCTGGTGGGTT 544 |||||| |||||||| ||||||| ||||||||||||||||||||||||||| |||||||| Sbjct 494 GAGACGTTCATATAAATCATTCTCTGATTATGATGTATGCGAAATGTGGTCAGGTGGGTT 553 Query 545 ATGCCCGGAAGGTGTTCGATGAAATTACTGACAGAGTTACGGTGTCTTGGAACTCGATGA 604 ||||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||| Sbjct 554 ATGCCCGGAAGTTGTTCGATGAAATTACTGAGAGAGATACGGTGTCTTGGAACTCGATGA 613 Query 605 TCTCTGGGTATTCTGAGGCGGGTCACGCAAAAGACGCTATGGATTTGTTTAGGAAGATGG 664 ||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||| Sbjct 614 TCTCTGGGTATTCTGAGGCGGGTTACGCTAAAGATGCTATGGATTTGTTTAGGAAGATGG 673 Query 665 AGGAGGAAGGATTTGAACCAGATGAGAGGACGTTGGTGAGTATGTTGGGTGCTTG-TGCA 723 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || Sbjct 674 AGGAGGAAGGATTTGAACCAGATGAGAGGACGTTGGTGAGTATGTTGGGTGCTTGCT-CA 732 Query 724 CATTTGGGGGATTTGACAACTGGTAGATTGCTGGAGAAGATAGCTATCACGAAGAAGATC 783 |||||||| ||||||| ||||||||||||||||||| |||| || ||||| ||||||||| Sbjct 733 CATTTGGGTGATTTGAGAACTGGTAGATTGCTGGAGGAGATGGCCATCACCAAGAAGATC 792 Query 784 GGGTTAAGCACCTTTCTCGGGTCTAAGTTGATGAGTATGTATGGAAAATGCGGCGATTTG 843 ||||||||||| ||||| |||||||||||||| ||||||||||||||||| || |||||| Sbjct 793 GGGTTAAGCACGTTTCTGGGGTCTAAGTTGATCAGTATGTATGGAAAATGTGGTGATTTG 852 Query 844 GATTCTGCCAGAAGGGTTTTCAATCAAATGATTAAGAAGGATCGTGTTGCTTGGAATGCT 903 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 853 GATTCTGCCAGAAGGGTTTTCAATCAAATGATTAAGAAGGATCGTGTTGCTTGGACTGCT 912 Query 904 ATGATCACTGTATACTCACAAAATGGGAAGTCGAGTGAGGCTTTTAAACTGTTTTTTGAG 963 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 913 ATGATCACTGTATACTCACAAAATGGGAAGTCAAGTGAGGCTTTTAAACTGTTTTTTGAG 972 Query 964 ATGGAAAAAGCCGGAGTTTCCCCAGACGCGGGCACATTGTCTACGGTTCTGTCTGCTTGT 1023 ||||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||| Sbjct 973 ATGGAAAAAACCGGAGTTTCACCAGACGCGGGCACATTGTCTACAGTTCTGTCTGCTTGT 1032 Query 1024 GGTTCAGTTGGAGCTCTTGAATTAGGCAAACGAATAGAGACCCACGCATCAGAAATTTCC 1083 ||||||||||||||||||||||||||||||| ||| |||||||| ||||||||| ||||| Sbjct 1033 GGTTCAGTTGGAGCTCTTGAATTAGGCAAACAAATTGAGACCCATGCATCAGAACTTTCC 1092 Query 1084 TTGCAACATAACATCTATGTGGCCACAGGACTAGTCGACATGTACGGAAAGTGCGGACAC 1143 ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1093 TTGCAACATAATATCTATGTGGCCACAGGACTAGTCGACATGTATGGAAAGTGCGGACGG 1152 Query 1144 ATAGAGGAAGCCCTGAGAGTATTTGAAGCTATGCCAGTGAAAAACGAAGCTACTTGGAAC 1203 |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1153 GTAGAGGAAGCTCTGAGAGTATTTGAAGCTATGCCAGTGAAAAACGAAGCCACTTGGAAC 1212 Query 1204 GCTATGATAACCGCTTATGCGCATCAAGGACATGCTAAAGAAGCTCTATTGCTATTTGAT 1263 |||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||| Sbjct 1213 GCTATGATAACCGCTTATGCGCATCAAGGACACGCTAAAGAAGCTCTTTTGCTGTTTGAT 1272 Query 1264 CAAATGCCAGTTCCTCCAAGTGATGTTACATTCATAGGAGTGCTCTCTGCTTGTGTGCAC 1323 | |||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||| Sbjct 1273 CGAATGTCAGTTCCTCCAAGTGATATAACATTCATAGGAGTGCTCTCTGCTTGTGTGCAC 1332 Query 1324 GCGGGTTTGGTCGATCAGGGCTGTCGATATTTCCATGAGATGAGTTCTTTGTTCGGGTTG 1383 |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1333 GCGGGTTTGGTCCATCAGGGCTGTCGATATTTCCATGAGATGAGTTCTATGTTCGGGTTG 1392 Query 1384 GTCCCAAAAATCGAGCATTACACAAACATAATCGATCTCCTGTCTCGTGCGGGGCTGTTA 1443 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1393 GTCCCAAAAATCGAGCATTACACAAACATAATCGATCTCCTGTCTCGTGCGGGGATGTTA 1452 Query 1444 GACGAGGCTTGGGAGTTCATGGAGAGGTTTCCTGGGAAGCCTGATGAGATCATGTTAGCA 1503 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1453 GACGAGGCTTGGGAGTTCATGGAGAGGTTTCCTGGGAAGCCTGATGAGATCATGTTAGCA 1512 Query 1504 GCGATCCTTGGAGCGTGTCATAAGAGAAAAGATGTTGCGATCAGAGAGAAGGCGATGAGG 1563 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1513 GCGATCCTTGGAGCATGTCATAAGAGAAAAGATGTTGCGATCAGAGAGAAGGCGATGAGG 1572 Query 1564 ATGTTGATGGAGATGAAAGAGGCGAAAAACGCAGGAAACTATGTAATCTCTTCGAAGGTT 1623 |||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||| Sbjct 1573 ATGTTGATGGAGATGAAAGAGGCGAAGAACGCAGGAAACTATGTAATCTCTTCTAATGTT 1632 Query 1624 TTAGCTGATATGAAGATGTGGGATGAGTCTGCGAAGATGAGGGCGTTGATGCGAGACAGA 1683 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1633 TTAGCTGATATGAAGATGTGGGATGAGTCTGCGAAGATGAGGGCGTTGATGAGAGACAGA 1692 Query 1684 GGCGTTGTTAAGACACCAGGATGCAGCTGGATTGAGATCGATGGTGAGCTAATGGAGTTT 1743 ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||| Sbjct 1693 GGCGTCGTTAAGACACCAGGATGCAGCTGGATTGAGATCGAGGGTGAGCTAATGGAATTT 1752 Query 1744 CTTGCCGGAAGCGATTATTTACGGTATGGCAGGGAAGATTCAGGTTCGTTGTTTGGTTTG 1803 |||||||||||||||||||||| || ||||||||||||||| |||||||| |||| |||| Sbjct 1753 CTTGCCGGAAGCGATTATTTACAGTGTGGCAGGGAAGATTCCGGTTCGTTATTTGATTTG 1812 Query 1804 TTGGTGGAGGAGATGAAGAGGGAACGGTATGATTTTG 1840 |||||||||||||||||||||||| ||||||| |||| Sbjct 1813 TTGGTGGAGGAGATGAAGAGGGAAAGGTATGAATTTG 1849 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 91766596260 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5