BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482403
Length=987
Score E
Sequences producing significant alignments: (Bits) Value
AT2G34430.1 | Symbols: LHB1B1, LHCB1.4 | light-harvesting chlor... 1537 0.0
AT2G34420.1 | Symbols: LHB1B2, LHCB1.5 | photosystem II light h... 1026 0.0
AT1G29910.1 | Symbols: CAB3, AB180, LHCB1.2 | chlorophyll A/B b... 966 0.0
AT1G29930.1 | Symbols: CAB1, AB140, CAB140, LHCB1.3 | chlorophy... 933 0.0
AT1G29920.1 | Symbols: CAB2, AB165, LHCB1.1 | chlorophyll A/B-b... 933 0.0
> AT2G34430.1 | Symbols: LHB1B1, LHCB1.4 | light-harvesting chlorophyll-protein
complex II subunit B1 | chr2:14524756-14525763
FORWARD LENGTH=1008
Length=1008
Score = 1537 bits (832), Expect = 0.0
Identities = 934/984 (95%), Gaps = 3/984 (0%)
Strand=Plus/Plus
Query 6 TTAACTAAA-AACCATTTACTTGCACCACACTCTCACCGCAATGGCCGCCTCGACAATGG 64
||||||||| | || ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 22 TTAACTAAAGAGCCTTTTACTTGCGCCACACTCTCACCGCAATGGCCGCCTCGACAATGG 81
Query 65 CTCTCTCCTCTCCTGCTATGGCCGGAAAGGCCGTTAAGCTATCCCCGGCGGCCTCCGAAG 124
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 82 CTCTCTCCTCTCCTGCTTTGACCGGAAAGGCCGTTAAGCTATCCCCGGCGGCCTCCGAAG 141
Query 125 TATTTGGAATCGGCCGAGTTACCATGCGCAAAGCCTCCAAACCCACCGGTCCATCAGGCA 184
||||||||| ||||||| | |||||||||||||||||||| |||||||||||||| ||||
Sbjct 142 TATTTGGAACCGGCCGAATCACCATGCGCAAAGCCTCCAAGCCCACCGGTCCATCCGGCA 201
Query 185 GCCCATGGTACGGATCCGACCGAGTCAAGTACTTGGGTCCATTCTCCGGTGAGCCTCCGA 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 202 GCCCATGGTACGGATCCGACCGAGTCAAGTACTTGGGTCCATTCTCCGGTGAGCCTCCGA 261
Query 245 GCTACCTCACTGGAGAATTCCCCGGTGACTACGGGTGGGACACTGCCGGTCTATCCGCAG 304
|||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 262 GCTACCTCACTGGAGAGTTCCCCGGTGATTACGGGTGGGACACTGCCGGTCTATCCGCCG 321
Query 305 ACCCCGAGACCTTCGCCAGGAACCGTGAGCTAGAAGTTATCCACAGCAGATGGGCCATGC 364
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 322 ATCCCGAGACCTTCGCTAGGAACCGTGAGCTAGAAGTTATCCACAGCAGATGGGCCATGC 381
Query 365 TCGGAGCCCTAGGCTGCGTTTTCCCTGAGCTGTTGGCTCGCAATGGAGTCAAATTCGGAG 424
||||||||||||||||||||||||||||||| |||||| | || ||||| || |||||||
Sbjct 382 TCGGAGCCCTAGGCTGCGTTTTCCCTGAGCTATTGGCTAGGAACGGAGTGAAGTTCGGAG 441
Query 425 AGGCAGTTTGGTTCAAGGCTGGTTCACAGATCTTCAGCGATGGAGGATTGGACTACTTGG 484
| || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 442 AAGCGGTTTGGTTCAAGGCTGGTTCACAGATCTTCAGCGACGGAGGATTGGACTACTTGG 501
Query 485 GCAATCCGAGCTTGGTCCACGCTCAGAGCATCTTAGCCATTTGGGCCACTCAAGTGATCC 544
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 502 GCAACCCGAGCTTGGTCCACGCTCAGAGCATCTTAGCCATTTGGGCTACTCAAGTTATCC 561
Query 545 TCATGGGAGCTGTTGAAGGCTACAGAGTCGCCGGAAATGGCCCATTGGGAGAGGCAGAGG 604
|||||||||||||||| |||||||||||||||||| |||| ||||||||||| |||||||
Sbjct 562 TCATGGGAGCTGTTGAGGGCTACAGAGTCGCCGGAGATGGTCCATTGGGAGAAGCAGAGG 621
Query 605 ACTTGCTTTACCCAGGTGGCAGCTTTGACCCATTGGGCCTTGCTACTGACCCCGAGGCGT 664
||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||| |
Sbjct 622 ACTTGCTTTACCCAGGTGGGAGCTTCGACCCATTGGGCCTCGCTACTGACCCCGAGGC-T 680
Query 665 TT-GCAGAGTTGAAGGTGAAGGAGCTCAAGAACGGAAGGTTGGCTATGTTCTCTATGTTT 723
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 681 TTCGCGGAGTTGAAGGTGAAGGAGCTCAAGAACGGAAGGTTGGCTATGTTCTCTATGTTT 740
Query 724 GGATTCTTCGTTCAGGCCATTGTCACCGGAAAGGGACCGTTGGAGAATCTTGCTGACCAC 783
||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||
Sbjct 741 GGATTCTTCGTTCAGGCCATTGTCACCGGAAAGGGACCGTTGGAGAACCTCGCGGACCAC 800
Query 784 TTGGCCGATCCAGTCAACAACAACGCATGGGCCTTCGCTACCAACTTCGTCCCCGGAAAG 843
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 801 TTGGCTGATCCAGTCAACAACAATGCATGGGCCTTCGCTACCAACTTCGTCCCCGGAAAG 860
Query 844 TGAGTTTAATATGTGATCAAGTTGTGTGTATCTGGTTTGTTGAATCTTGGAAATGTGATG 903
|||||||||| ||||||| ||||||||||||| ||||||||| |||||||||||||||||
Sbjct 861 TGAGTTTAATTTGTGATCGAGTTGTGTGTATCCGGTTTGTTGCATCTTGGAAATGTGATG 920
Query 904 CAGATTTCATCTCTTGTATATTACTTTGTAAGTGTGTGAAATATTTAAGAAGCTTTATGA 963
|||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 921 CAGATTTCATATCTTGTAAATTACTTTGTATGTGTGTGAAATATTTAAGAAGCTTTATGA 980
Query 964 TATTGATGGATCAGTCACTTACTA 987
||||||||||||||||||||||||
Sbjct 981 TATTGATGGATCAGTCACTTACTA 1004
> AT2G34420.1 | Symbols: LHB1B2, LHCB1.5 | photosystem II light
harvesting complex gene B1B2 | chr2:14522524-14523568 REVERSE
LENGTH=1045
Length=1045
Score = 1026 bits (555), Expect = 0.0
Identities = 726/808 (90%), Gaps = 13/808 (2%)
Strand=Plus/Plus
Query 45 AATGGCCGCCTCGACAATGGCTCTCTCCTCTCCTG-CTATGGCCGGAAAGGCCGTTAAGC 103
|||||| |||| || |||||| | ||||| |||| || | ||||||||||| || |||
Sbjct 55 AATGGCTTCCTCAACCATGGCTTTGTCCTCCCCTGCCT-TCGCCGGAAAGGCTGTGAAG- 112
Query 104 TATCCCCGGCGGCCTCCGAAGTATTTGGAATCGGCCGAGTTACCATGCGCAA-A--GCCT 160
|| || || || || || | |||| |||||| || |||||| | || | | |
Sbjct 113 -----CCTGCCGCATCAGATGTCCTCGGAAGCGGCCGTGTGACCATGAGGAAGACTGTCG 167
Query 161 CCAAACCCACCGGTCCATCAGGCAGCCCATGGTACGGATCCGACCGAGTCAAGTACTTGG 220
|||| || | ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 168 CCAAGCCAAAGGGTCCATCAGGCAGCCCATGGTACGGATCTGACCGAGTCAAGTACTTGG 227
Query 221 GTCCATTCTCCGGTGAGCCTCCGAGCTACCTCACTGGAGAATTCCCCGGTGACTACGGGT 280
||||||||||||| ||||| ||||||||||| || || || ||||||||||||||||| |
Sbjct 228 GTCCATTCTCCGGCGAGCCCCCGAGCTACCTTACCGGTGAGTTCCCCGGTGACTACGGAT 287
Query 281 GGGACACTGCCGGTCTATCCGCAGACCCCGAGACCTTCGCCAGGAACCGTGAGCTAGAAG 340
||||||| || ||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 288 GGGACACCGCTGGTCTATCCGCCGACCCAGAGACCTTCGCCAGGAACCGTGAGCTAGAAG 347
Query 341 TTATCCACAGCAGATGGGCCATGCTCGGAGCCCTAGGCTGCGTTTTCCCTGAGCTGTTGG 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 348 TTATCCACAGCAGATGGGCCATGCTCGGAGCCCTAGGCTGCGTTTTCCCTGAGCTATTGG 407
Query 401 CTCGCAATGGAGTCAAATTCGGAGAGGCAGTTTGGTTCAAGGCTGGTTCACAGATCTTCA 460
|| | || ||||| || |||||||| || |||||||||||||| ||||||||||||||||
Sbjct 408 CTAGGAACGGAGTGAAGTTCGGAGAAGCGGTTTGGTTCAAGGCCGGTTCACAGATCTTCA 467
Query 461 GCGATGGAGGATTGGACTACTTGGGCAATCCGAGCTTGGTCCACGCTCAGAGCATCTTAG 520
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 468 GCGACGGAGGATTGGACTACTTGGGCAACCCGAGCTTGGTCCACGCTCAGAGCATCTTAG 527
Query 521 CCATTTGGGCCACTCAAGTGATCCTCATGGGAGCTGTTGAAGGCTACAGAGTCGCCGGAA 580
|||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 528 CCATTTGGGCTACTCAAGTTATCCTCATGGGAGCTGTTGAAGGCTACAGAGTCGCCGGAG 587
Query 581 ATGGCCCATTGGGAGAGGCAGAGGACTTGCTTTACCCAGGTGGCAGCTTTGACCCATTGG 640
|||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 588 ATGGTCCATTGGGAGAAGCAGAGGACTTGCTTTACCCAGGTGGCAGCTTCGACCCATTGG 647
Query 641 GCCTTGCTACTGACCCCGAGGCGTTT-GCAGAGTTGAAGGTGAAGGAGCTCAAGAACGGA 699
|||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 648 GCCTCGCTACTGACCCCGAGGC-TTTCGCAGAGTTGAAGGTGAAGGAGCTCAAGAACGGA 706
Query 700 AGGTTGGCTATGTTCTCTATGTTTGGATTCTTCGTTCAGGCCATTGTCACCGGAAAGGGA 759
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 707 AGGTTGGCTATGTTCTCTATGTTTGGATTCTTCGTTCAAGCCATCGTCACCGGAAAGGGA 766
Query 760 CCGTTGGAGAATCTTGCTGACCACTTGGCCGATCCAGTCAACAACAACGCATGGGCCTTC 819
|| |||||||| || || ||||| |||||||| ||||||||||||||||| |||||||||
Sbjct 767 CCTTTGGAGAACCTCGCCGACCATTTGGCCGACCCAGTCAACAACAACGCTTGGGCCTTC 826
Query 820 GCTACCAACTTCGTCCCCGGAAAGTGAG 847
|| |||||||||||||||||||||||||
Sbjct 827 GCCACCAACTTCGTCCCCGGAAAGTGAG 854
> AT1G29910.1 | Symbols: CAB3, AB180, LHCB1.2 | chlorophyll A/B
binding protein 3 | chr1:10472280-10473299 REVERSE LENGTH=1020
Length=1020
Score = 966 bits (523), Expect = 0.0
Identities = 716/810 (88%), Gaps = 9/810 (1%)
Strand=Plus/Plus
Query 44 CAATGGCCGCCTCGACAATGGCTCTCTCCTCTCCTG-CTATGGCCGGAAAGGCCGTTAAG 102
||||||||||||| ||||||||||||||||| |||| || | ||||||||||| || ||
Sbjct 52 CAATGGCCGCCTCCACAATGGCTCTCTCCTCCCCTGCCT-TCGCCGGAAAGGCTGTGAAC 110
Query 103 CTATCCCCGGCGGCCTCCGAAGTATTTGGAATCGGCCGAGTTACCATGCGCAAAG-C--C 159
|| ||||| ||||| || ||||| | |||| |||||| || || ||| | ||| |
Sbjct 111 CTTTCCCCCGCGGCATCTGAAGTCCTCGGAAGCGGCCGTGTGACAATGAG-GAAGACTGT 169
Query 160 T-CCAAACCCACCGGTCCATCAGGCAGCCCATGGTACGGATCCGACCGAGTCAAGTACTT 218
| |||| || | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 170 TGCCAAGCCAAAGGGTCCATCAGGCAGCCCATGGTACGGATCCGACCGAGTCAAGTACTT 229
Query 219 GGGTCCATTCTCCGGTGAGCCTCCGAGCTACCTCACTGGAGAATTCCCCGGTGACTACGG 278
|||||||||||| || ||| | ||||||||||| || ||||| |||||||| ||||||||
Sbjct 230 GGGTCCATTCTCTGGCGAGTCACCGAGCTACCTTACCGGAGAGTTCCCCGGAGACTACGG 289
Query 279 GTGGGACACTGCCGGTCTATCCGCAGACCCCGAGACCTTCGCCAGGAACCGTGAGCTAGA 338
|||||||| || || || || || || |||||||| ||||| |||||||||||||||||
Sbjct 290 ATGGGACACCGCTGGACTTTCAGCTGATCCCGAGACATTCGCAAGGAACCGTGAGCTAGA 349
Query 339 AGTTATCCACAGCAGATGGGCCATGCTCGGAGCCCTAGGCTGCGTTTTCCCTGAGCTGTT 398
||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||| ||
Sbjct 350 AGTTATCCACAGCAGGTGGGCTATGCTCGGAGCCCTAGGCTGCGTCTTCCCTGAGCTTTT 409
Query 399 GGCTCGCAATGGAGTCAAATTCGGAGAGGCAGTTTGGTTCAAGGCTGGTTCACAGATCTT 458
|||| | || |||||||| ||||||||||| |||||||||||||| ||||||||||||||
Sbjct 410 GGCTAGGAACGGAGTCAAGTTCGGAGAGGCGGTTTGGTTCAAGGCCGGTTCACAGATCTT 469
Query 459 CAGCGATGGAGGATTGGACTACTTGGGCAATCCGAGCTTGGTCCACGCTCAGAGCATCTT 518
|||||||||||| | || |||||||| || || ||||||||||||||||||||||| ||
Sbjct 470 TAGCGATGGAGGACTCGATTACTTGGGAAACCCTAGCTTGGTCCACGCTCAGAGCATTTT 529
Query 519 AGCCATTTGGGCCACTCAAGTGATCCTCATGGGAGCTGTTGAAGGCTACAGAGTCGCCGG 578
|||||||||||||||||||| ||| | ||||||||||||||||||||||||||||| ||
Sbjct 530 GGCCATTTGGGCCACTCAAGTTATCTTGATGGGAGCTGTTGAAGGCTACAGAGTCGCAGG 589
Query 579 AAATGGCCCATTGGGAGAGGCAGAGGACTTGCTTTACCCAGGTGGCAGCTTTGACCCATT 638
|||||| || ||||||||||| ||||||||||||||||| ||||||||||| ||||||||
Sbjct 590 AAATGGGCCGTTGGGAGAGGCCGAGGACTTGCTTTACCCCGGTGGCAGCTTCGACCCATT 649
Query 639 GGGCCTTGCTACTGACCCCGAGGCGTTT-GCAGAGTTGAAGGTGAAGGAGCTCAAGAACG 697
||| |||||||| ||||| ||||| ||| || ||||||||||||||||||||||||||||
Sbjct 650 GGGTCTTGCTACCGACCCAGAGGC-TTTCGCGGAGTTGAAGGTGAAGGAGCTCAAGAACG 708
Query 698 GAAGGTTGGCTATGTTCTCTATGTTTGGATTCTTCGTTCAGGCCATTGTCACCGGAAAGG 757
|||| ||||||||||||||||||||||||||||||||||| ||||||||||| || ||||
Sbjct 709 GAAGATTGGCTATGTTCTCTATGTTTGGATTCTTCGTTCAAGCCATTGTCACTGGTAAGG 768
Query 758 GACCGTTGGAGAATCTTGCTGACCACTTGGCCGATCCAGTCAACAACAACGCATGGGCCT 817
||||| | ||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 769 GACCGATAGAGAACCTTGCTGACCATTTGGCCGATCCAGTCAACAACAACGCATGGGCCT 828
Query 818 TCGCTACCAACTTCGTCCCCGGAAAGTGAG 847
|||| |||||||| || |||||||||||||
Sbjct 829 TCGCAACCAACTTTGTTCCCGGAAAGTGAG 858
> AT1G29930.1 | Symbols: CAB1, AB140, CAB140, LHCB1.3 | chlorophyll
A/B binding protein 1 | chr1:10478005-10479048 FORWARD
LENGTH=1044
Length=1044
Score = 933 bits (505), Expect = 0.0
Identities = 719/823 (87%), Gaps = 11/823 (1%)
Strand=Plus/Plus
Query 33 CACT-CTC-ACCGCAATGGCCGCCTCGACAATGGCTCTCTCCTCTCCTG-CTATGGCCGG 89
|||| ||| ||| ||||||||||||| ||||||||||||||||| |||| || | |||||
Sbjct 52 CACTACTCAACCTCAATGGCCGCCTCAACAATGGCTCTCTCCTCCCCTGCCT-TCGCCGG 110
Query 90 AAAGGCCGTTAAGCTATCCCCGGCGGCCTCCGAAGTATTTGGAATCGGCCGAGTTACCAT 149
|||||||| ||||| ||||| ||||| || ||||| |||||| |||||| || || ||
Sbjct 111 TAAGGCCGTCAAGCTTTCCCCCGCGGCATCTGAAGTCCTTGGAAGCGGCCGTGTGACAAT 170
Query 150 GCGCAAAG-C--CT-CCAAACCCACCGGTCCATCAGGCAGCCCATGGTACGGATCCGACC 205
| | ||| | | |||| || | || |||||||||||||||||||||||||| ||||
Sbjct 171 GAG-GAAGACTGTTGCCAAGCCAAAGGGCCCATCAGGCAGCCCATGGTACGGATCTGACC 229
Query 206 GAGTCAAGTACTTGGGTCCATTCTCCGGTGAGCCTCCGAGCTACCTCACTGGAGAATTCC 265
| ||||||||||||||||||||||| || || | ||||||||||| || ||||| ||||
Sbjct 230 GTGTCAAGTACTTGGGTCCATTCTCTGGCGAATCACCGAGCTACCTTACCGGAGAGTTCC 289
Query 266 CCGGTGACTACGGGTGGGACACTGCCGGTCTATCCGCAGACCCCGAGACCTTCGCCAGGA 325
|||| |||||||| |||||||| ||||| || || || ||||||||||| ||||| ||||
Sbjct 290 CCGGAGACTACGGATGGGACACCGCCGGACTTTCAGCTGACCCCGAGACATTCGCAAGGA 349
Query 326 ACCGTGAGCTAGAAGTTATCCACAGCAGATGGGCCATGCTCGGAGCCCTAGGCTGCGTTT 385
||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 350 ACCGTGAACTAGAAGTTATCCACAGCAGGTGGGCCATGCTCGGAGCCCTAGGCTGCGTCT 409
Query 386 TCCCTGAGCTGTTGGCTCGCAATGGAGTCAAATTCGGAGAGGCAGTTTGGTTCAAGGCTG 445
|||||||||| |||||| | || |||||||| ||||||||||| |||||||||||||| |
Sbjct 410 TCCCTGAGCTTTTGGCTAGAAACGGAGTCAAGTTCGGAGAGGCGGTTTGGTTCAAGGCCG 469
Query 446 GTTCACAGATCTTCAGCGATGGAGGATTGGACTACTTGGGCAATCCGAGCTTGGTCCACG 505
||||||||||||||||||||||||| | || |||||||| || || |||||||| ||||
Sbjct 470 GTTCACAGATCTTCAGCGATGGAGGGCTCGATTACTTGGGAAACCCTAGCTTGGTTCACG 529
Query 506 CTCAGAGCATCTTAGCCATTTGGGCCACTCAAGTGATCCTCATGGGAGCTGTTGAAGGCT 565
|||||||||| || |||||||||||||| ||||| || | |||||||| ||||||||||
Sbjct 530 CTCAGAGCATTTTGGCCATTTGGGCCACACAAGTTATTTTGATGGGAGCCGTTGAAGGCT 589
Query 566 ACAGAGTCGCCGGAAATGGCCCATTGGGAGAGGCAGAGGACTTGCTTTACCCAGGTGGCA 625
|||||||||| |||||||| |||||||||||||| ||||||||||||||||| |||||||
Sbjct 590 ACAGAGTCGCAGGAAATGGGCCATTGGGAGAGGCCGAGGACTTGCTTTACCCCGGTGGCA 649
Query 626 GCTTTGACCCATTGGGCCTT-GCTACTGACCCCGAGGCGTTTGCAGAGTTGAAGGTGAAG 684
|||| ||||||||||| || ||||| ||||| ||||| || || |||||||||||||||
Sbjct 650 GCTTCGACCCATTGGG-TTTGGCTACCGACCCAGAGGCATTCGCTGAGTTGAAGGTGAAG 708
Query 685 GAGCTCAAGAACGGAAGGTTGGCTATGTTCTCTATGTTTGGATTCTTCGTTCAGGCCATT 744
||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 709 GAGCTCAAGAACGGAAGATTGGCTATGTTCTCTATGTTTGGATTCTTCGTTCAAGCCATC 768
Query 745 GTCACCGGAAAGGGACCGTTGGAGAATCTTGCTGACCACTTGGCCGATCCAGTCAACAAC 804
||||| || ||||||||| | ||||| ||||||||||| |||||||||||||| ||||||
Sbjct 769 GTCACTGGTAAGGGACCGATAGAGAACCTTGCTGACCATTTGGCCGATCCAGTTAACAAC 828
Query 805 AACGCATGGGCCTTCGCTACCAACTTCGTCCCCGGAAAGTGAG 847
||||||||||||||||| |||||||| || |||||||||||||
Sbjct 829 AACGCATGGGCCTTCGCCACCAACTTTGTTCCCGGAAAGTGAG 871
> AT1G29920.1 | Symbols: CAB2, AB165, LHCB1.1 | chlorophyll A/B-binding
protein 2 | chr1:10474784-10475959 REVERSE LENGTH=1176
Length=1176
Score = 933 bits (505), Expect = 0.0
Identities = 711/811 (88%), Gaps = 11/811 (1%)
Strand=Plus/Plus
Query 44 CAATGGCCGCCTCGACAATGGCTCTCTCCTCTCCTGCTATGGCCGGAAAGGCCGTTAAGC 103
||||||||||||| ||||||||||||||||| |||||| | ||||||||||| || || |
Sbjct 66 CAATGGCCGCCTCAACAATGGCTCTCTCCTCCCCTGCTTTCGCCGGAAAGGCTGTGAACC 125
Query 104 TATCCCCGGCGGCCTCCGAAGTATTTGGAATCGGCCGAGTTACCATGCGCAAAG-C--CT 160
| ||||| ||||| || ||||| |||||| |||||| || || ||| | ||| | |
Sbjct 126 TTTCCCCTGCGGCATCAGAAGTCCTTGGAAGCGGCCGTGTGACAATGAG-GAAGACTGTT 184
Query 161 -CCAAACCCACCGGTCCATCAGGCAGCCCATGGTACGGATCCGACCGAGTCAAGTACTTG 219
|||| || | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 185 GCCAAGCCAAAGGGTCCATCAGGCAGCCCATGGTACGGATCCGACCGAGTCAAGTACTTG 244
Query 220 GGTCCATTCTCCGGTGAGCCTCCGAGCTACCTCACTGGAGAATTCCCCGGTGACTACGGG 279
||||||||||| || ||| | || |||||||| || ||||| ||||| || ||||||||
Sbjct 245 GGTCCATTCTCTGGCGAGTCACCCAGCTACCTTACCGGAGAGTTCCCTGGAGACTACGGA 304
Query 280 TGGGACACTGCCGGTCTATCCGCAGACCCCGAGACCTTCGCCAGGAACCGTGAGCTAGAA 339
|||||||| || ||||||||||| ||||||||||| ||||| ||||||||||||||||||
Sbjct 305 TGGGACACAGCTGGTCTATCCGCTGACCCCGAGACATTCGCAAGGAACCGTGAGCTAGAA 364
Query 340 GTTATCCACAGCAGATGGGCCATGCTCGGAGCCCTAGGCTGCGTTTTCCCTGAGCTGTTG 399
|||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 365 GTTATCCACAGCAGGTGGGCCATGCTCGGAGCCCTAGGCTGCGTCTTCCCTGAGCTTTTG 424
Query 400 GCTC-GCAATGGAGTCAAATTCGGAGAGGCAGTTTGGTTCAAGGCTGGTTCACAGATCTT 458
|| | | || |||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 425 GC-CAGGAACGGAGTCAAGTTTGGAGAGGCAGTTTGGTTCAAGGCTGGTTCACAGATCTT 483
Query 459 CAGCGATGGAGGATTGGACTACTTGGGCAATCCGAGCTTGGTCCACGCTCAGAGCATCTT 518
|||||||||||| | || |||||||| || || |||||||| |||||||||||||| ||
Sbjct 484 CAGCGATGGAGGGCTCGATTACTTGGGAAACCCTAGCTTGGTTCACGCTCAGAGCATTTT 543
Query 519 AGCCATTTGGGCCACTCAAGTGATCCTCATGGGAGCTGTTGAAGGCTACAGAGTCGCCGG 578
|||||||||||||| ||||| || | |||||||| |||||||| ||||||||||| ||
Sbjct 544 GGCCATTTGGGCCACACAAGTTATTTTGATGGGAGCCGTTGAAGGTTACAGAGTCGCAGG 603
Query 579 AAATGGCCCATTGGGAGAGGCAGAGGACTTGCTTTACCCAGGTGGCAGCTTT-GACCCAT 637
|||||| |||||||||||||| ||||||||||||||||| |||||||| ||| |||||||
Sbjct 604 AAATGGGCCATTGGGAGAGGCCGAGGACTTGCTTTACCCCGGTGGCAG-TTTCGACCCAT 662
Query 638 TGGGCCTTG-CTACTGACCCCGAGGCGTTTGCAGAGTTGAAGGTGAAGGAGCTCAAGAAC 696
|||| ||| |||| ||||| ||||| || || ||||||||||| |||||||||||||||
Sbjct 663 TGGGT-TTGGCTACCGACCCAGAGGCCTTCGCTGAGTTGAAGGTAAAGGAGCTCAAGAAC 721
Query 697 GGAAGGTTGGCTATGTTCTCTATGTTTGGATTCTTCGTTCAGGCCATTGTCACCGGAAAG 756
||||| ||||||||||||||||||||||||||||||||||| ||||| ||||| || |||
Sbjct 722 GGAAGATTGGCTATGTTCTCTATGTTTGGATTCTTCGTTCAAGCCATCGTCACTGGTAAG 781
Query 757 GGACCGTTGGAGAATCTTGCTGACCACTTGGCCGATCCAGTCAACAACAACGCATGGGCC 816
|||||| | ||||| ||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 782 GGACCGATAGAGAACCTTGCTGACCATTTGGCCGATCCAGTCAACAACAACGCTTGGGCC 841
Query 817 TTCGCTACCAACTTCGTCCCCGGAAAGTGAG 847
|| || |||||||| || |||||||||||||
Sbjct 842 TTTGCCACCAACTTTGTTCCCGGAAAGTGAG 872
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48325249414
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5