BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg482404

Length=566
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G34440.1 | Symbols: AGL29 | AGAMOUS-like 29 | chr2:14526950-...   830    0.0  


> AT2G34440.1 | Symbols: AGL29 | AGAMOUS-like 29 | chr2:14526950-14527689 
FORWARD LENGTH=740
Length=740

 Score =  830 bits (449),  Expect = 0.0
 Identities = 498/521 (96%), Gaps = 6/521 (1%)
 Strand=Plus/Plus

Query  1    ATGGGTCGGAGAAAGATCAAGATGGAGATGGTTCAGGACATGAACACACGACAGGTTACC  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGGGTCGGAGAAAGATCAAGATGGAGATGGTTCAGGACATGAACACACGACAGGTTACC  60

Query  61   TTTTCAAAACGGAGGACCGGTTTGTTCAAGAAGGCGAGCGAGTTAGCCACGCTCTGCAAC  120
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   TTTTCAAAACGGAGGACTGGTTTGTTCAAGAAGGCGAGCGAGTTAGCCACGCTCTGCAAC  120

Query  121  GCTGAGTTGGGTATCGTTGTCTTTTCACCAGGAGGCAAGCCTTTCTCCTACGGGAAACCG  180
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  GCTGAGTTGGGCATCGTTGTCTTTTCACCAGGAGGCAAGCCTTTCTCCTACGGGAAACCG  180

Query  181  AATCTTGATTCTGTTGCAGAGCGATTCATGAGAGAATATGATGATTCAGACAGTGGCGAT  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  AATCTTGATTCTGTTGCAGAGCGATTCATGAGAGAATATGATGATTCAGACAGTGGCGAT  240

Query  241  GAA-AAAGAAAGTGGTAACAACAGGCCTAAACTGAAGAGGATGAGTGAACATCTCGATTT  299
            ||| ||| ||||||||||  |||||||||||||||||||| ||||||||| |||||||||
Sbjct  241  GAAGAAA-AAAGTGGTAATTACAGGCCTAAACTGAAGAGGCTGAGTGAACGTCTCGATTT  299

Query  300  GCTCAACCAAGAGATTGAAGCTGAGAAG-AATCGAGGTGAGACTGA-TCAGGAGAAGCTT  357
            ||||||||||||| |||||||||||||| || ||||| ||||  || |||||||||||||
Sbjct  300  GCTCAACCAAGAGGTTGAAGCTGAGAAGGAA-CGAGGCGAGAA-GAGTCAGGAGAAGCTT  357

Query  358  GAATCTGCTGGGGATGAGAGATTCAAGAATTCCATTGAGACACTTACCCTCGATGAACTC  417
            ||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||
Sbjct  358  GAATCTGCTGGGGATGAGAGATTCAAGGAGTCCATTGAGACGCTTACCCTCGATGAACTC  417

Query  418  AATGAATACAAAGATAAGCTCCAGACAGTCCATGGTAGGATTGAATGTCAAGTCAATCAC  477
            |||||||||||||||| ||| |||||||||||||||||||||||| ||||||||||||||
Sbjct  418  AATGAATACAAAGATAGGCTTCAGACAGTCCATGGTAGGATTGAAGGTCAAGTCAATCAC  477

Query  478  ATGCAGGCTTCGTCTTGTCTCATGCTTCTCTCCAGAAAATA  518
             |||||||||||||||| |||||||||||||||||||||||
Sbjct  478  TTGCAGGCTTCGTCTTGCCTCATGCTTCTCTCCAGAAAATA  518


 Score = 84.2 bits (45),  Expect = 1e-15
 Identities = 52/55 (95%), Gaps = 2/55 (4%)
 Strand=Plus/Plus

Query  514  AAAT-AAAA-GTACCTGGAAATTTGTCTGTATTAATCTCAAGTGTACTTACTAAA  566
            |||| |||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  646  AAATGAAAATGTACCTGGAAATTTGTCTGTATTAATCTCAAGTGTACTTGCTAAA  700



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27176673527


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5