BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482406
Length=646
Score E
Sequences producing significant alignments: (Bits) Value
AT2G34450.2 | Symbols: | HMG-box (high mobility group) DNA-bin... 972 0.0
> AT2G34450.2 | Symbols: | HMG-box (high mobility group) DNA-binding
family protein | chr2:14527736-14529492 REVERSE LENGTH=685
Length=685
Score = 972 bits (526), Expect = 0.0
Identities = 610/650 (94%), Gaps = 8/650 (1%)
Strand=Plus/Plus
Query 1 GAGAAAGTGAGAGAAAATGACGAAGAAAGCTCCCAAGTCAGGGCCTTTGTCTCCGTCGTG 60
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 29 GAGAAAGTGAGAGAAAATGACGAAGAGAGCTCCCAAGTCAGGGCCTTTGTCTCCGTCGTG 88
Query 61 CAGCGGAGGCTCTAGTCGGAACTTCGATTTGGCTGTGAAGTCAAGTGAAGGTGCAAGGAG 120
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 89 CAGCGGAGGCTCTAGTCGGAACTTAGAGTTGGCTGTGAAGTCAAGTGAAGGTGCAAGGAG 148
Query 121 GTCTACAAGACTGAGACTTCAGCCTTTGCGAAAGCCAAAGTCAAGCCCGAAGAAGAAGAA 180
|||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||| |
Sbjct 149 GTCTACAAGACTGAGACTTCAGCCTTTGAGAAAGCCAAAGACAAGCCCCAAGAAGAA-A- 206
Query 181 ACCCGTTAAACTCCATTCAAAGATGCCCAAGAAACCTCCCACTGCTTTCTTCTTTTTCTT 240
|||||||||||||| | |||||||||||||||||| |||||||||||||||||||| |
Sbjct 207 -CCCGTTAAACTCCAAACGAAGATGCCCAAGAAACCTGCCACTGCTTTCTTCTTTTTCCT 265
Query 241 GGAGGATTTCCGGAAACAATATCAAGAGGAGAATCCGGAGGTCAAGTCCATGCGTGAGGT 300
||| ||||||||||| |||||||||||||||||||| || |||||||||||||| |||||
Sbjct 266 GGATGATTTCCGGAAGCAATATCAAGAGGAGAATCCAGATGTCAAGTCCATGCGCGAGGT 325
Query 301 TATTGGGAAGACATGTGGAGAGAAATGGAAAACAATGACATACGAGGAAAAGGTGAAGTA 360
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 326 TATTGGGAAGACATGTGGAGAGAAATGGAAAACAATGACTTACGAGGAAAAGGTAAAGTA 385
Query 361 TTATGATATAGCCACTGAGAAGAGGGAGGAATTTCACCGAGCAATGACAGAATATACCAA 420
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 386 TTATGATATAGCTACTGAGAAGAGGGAAGAATTTCACCGAGCAATGACAGAATATACCAA 445
Query 421 GAGAATGGAATCAGGTGGATACGATGAATCAGAGACCGACTCAGAATATTCTGAATAGAT 480
||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 446 GAGAATGGAATCAGGTGCCCACGATGAATCAGAGACCGACTCAGACTATTCTGAATAGAT 505
Query 481 TACTTTTTGGTTTTTACCACATTAGAAACATTGTTTTAAGCCTTCTAGGATGGGTTTGTA 540
|||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 506 TACTTTTTAGTTTCTACCACATTAGAAACATTGTTCTAAGCCTTCTAGGATGGGTTTGTA 565
Query 541 TATCGGTGATATTTA-GAAGTTTCTGTTTCGTT---GAGATCATACTTTCCCTGGTACTC 596
||||||||||||||| || |||||||||||||| |||||||| ||||| ||| |||||
Sbjct 566 TATCGGTGATATTTAAGA-GTTTCTGTTTCGTTTTTGAGATCATTCTTTCACTGATACTC 624
Query 597 GTGCTTCTGTGGATTGCATTTGGAGATCAATGAATACTAACCAGTTTCTT 646
|| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 625 ATGTTTCTGTGGATTGCATTTGGAGATCAATGAATACTAACCAGTTTCTT 674
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31195405287
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5