BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482407
Length=1121
Score E
Sequences producing significant alignments: (Bits) Value
AT2G34460.1 | Symbols: | NAD(P)-binding Rossmann-fold superfam... 1631 0.0
AT2G34470.2 | Symbols: UREG, PSKF109 | urease accessory protein... 329 3e-89
> AT2G34460.1 | Symbols: | NAD(P)-binding Rossmann-fold superfamily
protein | chr2:14529608-14530958 FORWARD LENGTH=1096
Length=1096
Score = 1631 bits (883), Expect = 0.0
Identities = 1052/1127 (93%), Gaps = 37/1127 (3%)
Strand=Plus/Plus
Query 1 CGTTTGTGGCAGAGAAGTTACACATCGATGGCAACATCTCTGCTTCTCAGACATTCCTCA 60
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1 CGTTTGTGGCAGAGAGGTTACACATCGATGGCAACATCTTTGCTTCTCAGACATTCCTCA 60
Query 61 GCTGtcttcttctctcagtcttccttctttttcaccaagaacagctcttttcgttccttc 120
||||||||||||||||||||||||||| ||||||||||||| |||||||| |||||
Sbjct 61 GCTGTCTTCTTCTCTCAGTCTTCCTTC---TTCACCAAGAACAAATCTTTTCGCTCCTT- 116
Query 121 t-cttcCATCAAAATGGAAAGAGGTGAAGCAAGTGAAGAAAAAGATGCAGTGAAGACGAC 179
| |||||||||||||||||| ||||||||| | | || | ||||||||||||| |
Sbjct 117 TACTTCCATCAAAATGGAAAAAGGTGAAGC-A--G-AG----A-ATGCAGTGAAGAC-A- 165
Query 180 GAAGAAGGTGTTTGTCGCCGGAGCCACTGGACAAACGGGGAAAAGGATTGTGGAGCAGTT 239
||||||||||||||||| ||||| ||||||||||| ||||| |||||||||||||||||
Sbjct 166 -AAGAAGGTGTTTGTCGCAGGAGCAACTGGACAAACCGGGAAGAGGATTGTGGAGCAGTT 224
Query 240 GTTGTCCCGTGGCTTTGCCGTCAAAGCTGGTGTTCGTGATGTAGAGAAAGCTAAAACATC 299
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 225 GTTGTCCCGTGGCTTTGCCGTCAAAGCTGGTGTTCGTGATGTAGAGAAAGCAAAAACATC 284
Query 300 TTTCAAAGACGACCCGTCTCTTCAGATCGTTAGAGCAGACGTGACAGAAGGTCCTGATAA 359
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 285 TTTCAAAGACGACCCGTCTCTTCAGATAGTTAGAGCAGACGTGACAGAAGGTCCTGATAA 344
Query 360 GCTAGCTGAAGCTATAGGTGATGATTCTCAAGCTGTGATTTGTGCTACTGGGTTTCGTCC 419
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 345 GCTAGCTGAAGTTATAGGTGATGATTCTCAAGCTGTGATTTGTGCTACTGGGTTTCGTCC 404
Query 420 GGGGTTTGATATATTCACTCCTTGGAAAGTCGATAATTTTGGGACGGTGAATCTTGTGGA 479
|| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 405 CGGATTTGATATATTCACTCCTTGGAAAGTCGATAATTTCGGGACAGTGAATCTTGTGGA 464
Query 480 TGCTTGCCGTAAACAAGGAGTGGAAAAGTTTGTTCTTATAAGCTCAATCTTGGTTAATGG 539
||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||
Sbjct 465 TGCTTGCCGTAAACAAGGAGTGGAAAAGTTTGTTCTTGTAAGCTCCATCTTGGTGAATGG 524
Query 540 AGCTGCAATGGGACAGATACTGAACCCTGCTTACATCTTCCTCAACCTCTTTGGACTAAC 599
|||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 525 AGCTGCCATGGGACAGATACTGAACCCTGCTTACCTCTTCCTCAACCTCTTTGGACTAAC 584
Query 600 TCTTGTCGCTAAGCTTCAAGCCGAGAAGTATATCAGAAGATCTGGCATCAACTATACTAT 659
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 585 TCTTGTCGCTAAGCTTCAAGCCGAGAAGTATATCAAAAAATCTGGCATCAACTATACTAT 644
Query 660 AGTAAGGCCTGGTGGTCTTAAAAACGATCCTCCAACCGGAAATGTAGTCATGGAGCCAGA 719
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 645 AGTAAGGCCTGGTGGTCTTAAAAACGATCCTCCAACTGGAAATGTTGTCATGGAGCCAGA 704
Query 720 GGATACTCTGTATGAAGGGAGCATATCGAGAGACCTGGTCGCAGAAGTTGCAGTGGAAGC 779
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 705 GGATACTCTATATGAAGGGAGTATATCGAGAGACCTGGTCGCAGAAGTTGCAGTGGAAGC 764
Query 780 TTTACTTCAAGAGGAATCATCTTTCAAGGTTGTGGAGATAGTTGCTCGTGCCGAAGCTCC 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 765 TTTACTTCAAGAGGAATCATCTTTCAAGGTTGTGGAGATAGTTGCTCGTGCCGAAGCTCC 824
Query 840 AAAACGTTCCTACAAAGATCTATTTGCTTCTGTTAAAGGACAATAACTAGAATACAAATC 899
||||||||||||||||||||||||||| |||||||||||||||||| | | |
Sbjct 825 AAAACGTTCCTACAAAGATCTATTTGCCTCTGTTAAAGGACAATAA--A-----C---T- 873
Query 900 AATCAGAATGTAATGAGTCTCATGCTCAAAACTTTTATTTCTCTTATGTCTTGCGTACAA 959
| ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 874 A----GAATGTAATGAGTCTCATGCTCAAACCTTTTATTTCTCTTATGTCTTGAGTACAA 929
Query 960 CAAACAGAT-ACATAAACTTTTGCGAATAAACCGAGTTCAAGATAAGTATTGAAAGAGTT 1018
||||||||| ||||| ||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 930 CAAACAGATTACATAGACTTTTGCGCATAAATTGAGTTCAAGATAAGTATTGAAAGAGTT 989
Query 1019 CCATTCAGTTTCATCTCTTATCCATTTTGGGTCTTAAGAGCCC-ATCA-C--TGGCGCTT 1074
|||||||||||||| |||||||||||||||||||||||| ||| |||| | ||||||||
Sbjct 990 CCATTCAGTTTCATATCTTATCCATTTTGGGTCTTAAGAACCCCATCATCACTGGCGCTT 1049
Query 1075 CTTCCCAGTCGCATGTTCCCATGAGTGCATGACATGGTTCACGATTT 1121
|||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1050 CTTCCCGGTCGCATGTTCCCATGAGTGCATGACATGGTTCACGATTT 1096
> AT2G34470.2 | Symbols: UREG, PSKF109 | urease accessory protein
G | chr2:14530735-14532505 REVERSE LENGTH=1090
Length=1090
Score = 329 bits (178), Expect = 3e-89
Identities = 209/223 (94%), Gaps = 5/223 (2%)
Strand=Plus/Minus
Query 904 AGAATGTAATGAGTCTCATGCTCAAAACTTTTATTTCTCTTATGTCTTGCGTACAACAAA 963
|||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 1089 AGAATGTAATGAGTCTCATGCTCAAACCTTTTATTTCTCTTATGTCTTGAGTACAACAAA 1030
Query 964 CAGA-TACATAAACTTTTGCGAATAAACCGAGTTCAAGATAAGTATTGAAAGAGTTCCAT 1022
|||| |||||| ||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 1029 CAGATTACATAGACTTTTGCGCATAAATTGAGTTCAAGATAAGTATTGAAAGAGTTCCAT 970
Query 1023 TCAGTTTCATCTCTTATCCATTTTGGGTCTTAAG-A-GCC--CATCACTGGCGCTTCTTC 1078
|||||||||| ||||||||||||||||||||||| | || ||||||||||||||||||
Sbjct 969 TCAGTTTCATATCTTATCCATTTTGGGTCTTAAGAACCCCATCATCACTGGCGCTTCTTC 910
Query 1079 CCAGTCGCATGTTCCCATGAGTGCATGACATGGTTCACGATTT 1121
|| ||||||||||||||||||||||||||||||||||||||||
Sbjct 909 CCGGTCGCATGTTCCCATGAGTGCATGACATGGTTCACGATTT 867
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54969596775
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5