BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482410
Length=802
Score E
Sequences producing significant alignments: (Bits) Value
AT2G34480.1 | Symbols: | Ribosomal protein L18ae/LX family pro... 1269 0.0
AT3G14600.1 | Symbols: | Ribosomal protein L18ae/LX family pro... 501 4e-141
> AT2G34480.1 | Symbols: | Ribosomal protein L18ae/LX family protein
| chr2:14532708-14534239 REVERSE LENGTH=823
Length=823
Score = 1269 bits (687), Expect = 0.0
Identities = 766/803 (95%), Gaps = 9/803 (1%)
Strand=Plus/Plus
Query 1 TCATTTATAAACTAGAAGAACCCTAGCCGCATATATTTATTTGGTTGAGGTTTCTACCGC 60
||||||||||| ||||||||||||||||| | || ||||||||||||||||| |||||
Sbjct 1 TCATTTATAAAGAAGAAGAACCCTAGCCGC-T-TA--TATTTGGTTGAGGTTTCCACCGC 56
Query 61 ATTGTCTCTCTCCAGACGAAAAATGGGTGCTTTCAGGTTTCACCAGTACCAGGTTGTGGG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 57 ATTGTCTCTCTCCAGACGAAAAATGGGTGCTTTCAGGTTTCACCAGTACCAGGTTGTGGG 116
Query 121 AAGAGCTCTACCGACAGAGAAGGATGTGCAGCCTAAGATTTACCGGATGAAGCTCTGGGC 180
||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 117 AAGAGCTCTCCCGACAGAGAAGGATGTGCAGCCTAAGATTTACAGGATGAAGCTCTGGGC 176
Query 181 CACGAACGAGGTTCGTGCCAAGTCCAAGTTCTGGTATTTCTTAAGGAAGCTCAAGAAGGT 240
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 177 TACGAACGAGGTTCGTGCCAAGTCCAAGTTCTGGTATTTCTTGAGGAAGCTCAAGAAGGT 236
Query 241 CAAGAAGAGTAACGGACAGATGCTCGCCATCAACGAGATCTATGAGAAGAATCCAACAAC 300
||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 237 GAAGAAGAGTAATGGACAGATGCTCGCCATCAACGAGATCTATGAGAAGAACCCAACAAC 296
Query 301 GATCAAGAACTTCGGTATTTGGTTGAGGTACCAGAGCAGAACTGGGTACCACAACATGTA 360
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 297 GATCAAGAACTTCGGTATTTGGTTGAGGTACCAGAGTAGAACTGGGTACCACAACATGTA 356
Query 361 CAAGGAATACCGTGACACCACTCTTAACGGAGCTGTTGAACAGATGTACACTGAGATGGC 420
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 357 CAAGGAGTACCGTGACACCACTCTTAACGGAGCTGTTGAGCAGATGTACACTGAGATGGC 416
Query 421 TTCTCGTCACCGTGTCAGATTCCCTTGCATTCAGATCATCAAGACAGCCACTGTCCCTGC 480
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 417 ATCCCGTCACCGTGTCAGATTCCCTTGCATTCAGATCATCAAGACAGCCACTGTCCCAGC 476
Query 481 CAAGCTGTGCAAGAGAGAGAGCACTAAACAGTTCCACAACAGCAAGATCAAGTTCCCATT 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 CAAGCTGTGCAAGAGAGAGAGCACTAAACAGTTCCACAACAGCAAGATCAAGTTCCCATT 536
Query 541 GGTGTTCCGCAAGGTTAGACCACCAAGCAGGAAGCTGAAGACGACTTACAAGGCCAACAA 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 GGTGTTCCGCAAGGTTAGACCACCAAGCAGGAAGCTGAAGACGACTTACAAGGCCAACAA 596
Query 601 GCCCAACTTGTTCATGTAAAACGTCTCTGATTGACTCTTTTTTGGGGTGGAATCGATGTT 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 GCCCAACTTGTTCATGTAAAACGTCTCTGATTGACTCTTTTTTGGGGTGGAATCGATGTT 656
Query 661 GAAGCTATGCTCTCTGTTGTTTTTGATCTTT-TCGGATATTTTTGTTTATCATCAATATG 719
|||||| |||||||| ||||| ||| ||| |||| ||||||||||| | ||||||||
Sbjct 657 GAAGCTGTGCTCTCTCCCGTTTTGGAT-TTTATCGGTTATTTTTGTTT-T--TCAATATG 712
Query 720 TTAGGCGTACTCATGAAACTCAACTCGACTTTGTCTGGATTTTATGGTTCTTGTTTCCTG 779
||||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||
Sbjct 713 TTAGGCGTACTCATGAATGTGAACTCGACTTTGTCTGGATTTTATGCTTCTTGTTTCCTA 772
Query 780 CTTATGaaaaaaaCTTTCCCTTA 802
|||||||||||| ||||||||||
Sbjct 773 CTTATGAAAAAACCTTTCCCTTA 795
> AT3G14600.1 | Symbols: | Ribosomal protein L18ae/LX family protein
| chr3:4910697-4912173 FORWARD LENGTH=853
Length=853
Score = 501 bits (271), Expect = 4e-141
Identities = 457/546 (84%), Gaps = 16/546 (3%)
Strand=Plus/Plus
Query 81 AAATGGGTGCTTTCAGGTTTCACCAGTACCAGGTTG-TGGGAAGAGCTCTACCGACAGAG 139
||||||||| |||| ||||||||||||| ||||| | |||| ||||| || |||||||||
Sbjct 75 AAATGGGTGGTTTCCGGTTTCACCAGTATCAGGTGGTTGGG-AGAGCCCTCCCGACAGAG 133
Query 140 AAGGATGTGCAGCCTAAGATTTACCGGATGAAGCTCTGGGCCACG-AACGAGGT-TCGTG 197
|| |||| ||| |||||||| ||| |||||||||| |||| | | || || || | | |
Sbjct 134 AACGATGAGCACCCTAAGATCTACAGGATGAAGCTTTGGGGTA-GAAATGAAGTAT-GCG 191
Query 198 CCAAGTCCAAGTTCTGGTATTTCTTAAGGAAGCTCAAGAAGGTCAAGAAGAGTAACGGAC 257
||||||||||||||||||| ||| | ||||| || |||||||| ||||| || |||||||
Sbjct 192 CCAAGTCCAAGTTCTGGTACTTCATGAGGAAACTGAAGAAGGTGAAGAAAAGCAACGGAC 251
Query 258 AGATGCTCGCCATCAACGAGATCTAT-GAGAAGAATCCAACAACGATCAAGAACTTCGGT 316
||||||| |||||||| ||||| | | |||||||| ||||| || |||||||||| |||
Sbjct 252 AGATGCTTGCCATCAATGAGAT-TTTCGAGAAGAACCCAACGACCATCAAGAACTACGGG 310
Query 317 ATTTGGTTGAGGTACCAGAGCAGAACTGGGTACCACAACATGTACAAGGAATACCGTGAC 376
|| |||||| | || |||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 311 ATCTGGTTGCGTTATCAGAGCCGAACTGGGTACCACAACATGTACAAGGAGTACCGTGAC 370
Query 377 ACCACTCTTAACGGAGCTGTTGAACAGATGTACACTGAGATGGCTTCTCGTCACCGTGTC 436
|| || || || || | || || ||||||||||||||||||||||||||||| | ||
Sbjct 371 ACAACACTCAATGGTGGAGTGGAGCAGATGTACACTGAGATGGCTTCTCGTCATAGAGTG 430
Query 437 AGATTCCCTTGCATTCAGATCATCAAGACAGCCACTGTCCCTGCCAAGCTGTGCAAGAGA 496
|| |||||||||||||||||||||||||| || ||||||||||| ||||| |||||||||
Sbjct 431 AGGTTCCCTTGCATTCAGATCATCAAGACTGCGACTGTCCCTGCAAAGCTTTGCAAGAGA 490
Query 497 GAGAGCACTAAACAGTTCCACAACA-GCAAGATCAAGTTCCCA-TTGGTGTTCCGCAAGG 554
|||| ||| || |||||||| ||| | |||||||||||||| ||| | ||| | ||||
Sbjct 491 GAGATCACCAAGCAGTTCCATAACTCG-AAGATCAAGTTCCCTCTTGTT-TTCAGGAAGG 548
Query 555 TTAGACCACCAAGCAGGAAGCTGAAGACGACTTACAAGGCCAACAAGCCC-AAC-TTGTT 612
| |||||||||||||||||||| ||||| || |||||||| | ||| || ||| || ||
Sbjct 549 TCAGACCACCAAGCAGGAAGCTTAAGACTACATACAAGGC-ATCAAAACCTAACCTT-TT 606
Query 613 CATGTA 618
||||||
Sbjct 607 CATGTA 612
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39031932219
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5