BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482413
Length=800
Score E
Sequences producing significant alignments: (Bits) Value
AT2G34520.1 | Symbols: RPS14 | mitochondrial ribosomal protein ... 998 0.0
> AT2G34520.1 | Symbols: RPS14 | mitochondrial ribosomal protein
S14 | chr2:14547784-14548758 REVERSE LENGTH=885
Length=885
Score = 998 bits (540), Expect = 0.0
Identities = 740/829 (89%), Gaps = 44/829 (5%)
Strand=Plus/Plus
Query 1 AGAGAACCCTAAAACCATTTCCGCGGCGGCGTTTCTCCGATTTCCCGAATCAATGGCGAG 60
|||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 3 AGAGAACCCTAAAACCATTTCCGCGGCGGCGTTTCT-CG-------GAATCAATGGCGAG 54
Query 61 TCTCCGAGGAGTCCTGCTCAACGTAACTTCCTATTGCCAGCGTTCTCTCACTCAATCGTC 120
||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 55 TCTCCGAAGAGTCCTGCTCAACGTAACTTCCTATTGCCAACGTTCTCTCACTCAATCGTC 114
Query 121 GCATTCTACCTCGGGGCTATTGTCTCGATCTATGGTGAAGCATCCGAACAATCTCGGTCA 180
| ||||||| |||||| | || || ||||| |||| |||||| ||||||||||||||||
Sbjct 115 GTATTCTACGTCGGGGATGTTATCCCGATCGGTGGTCAAGCATGCGAACAATCTCGGTCA 174
Query 181 AGTTCAAGCTAAACATTTCACGACAACGCTTATGAAATCGGGACCGAAGCATAGTGGTAC 240
| ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 175 AATTCAAGCTAGACATTTCACGACAACGCTTATGAAATCGGGACCAAAGCATAGTGGTAC 234
Query 241 AGAGCAAGGCGTGAAGCGAAACAGTGCCGATCACAGACGTAGATTGCTCGCGGCTAGATT 300
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 235 AGAGCAAGGCGTGAAGCGAAACAGTGCAGATCACAGACGTAGATTGCTCGCGGCTAGATT 294
Query 301 CGAACTGAGAAGAAAGCTATACAAAGCATTTTGCAAAGATCCAGATCTTCCCAGCGAAAT 360
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 295 TGAACTGAGAAGAAAGCTATACAAAGCGTTTTGCAAAGATCCAGATCTTCCCAGCGAAAT 354
Query 361 GCGAGACAAGAATCGTTATAAGCTCTCGAAATTGCCGAGAAACAGTGCCTTTGCGCGAAT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 355 GCGAGACAAGAATCGTTATAAGCTCTCGAAATTGCCGAGAAACAGTGCCTTTGCGAGAAT 414
Query 421 CAGAAACCGATGTGTGTTCACTGGTCGATCTCGTTCTGTGACGGAGCTGTTTCGTGTGTC 480
||| ||| |||||||||||||||||||||||||||||||||| |||||||| ||||| ||
Sbjct 415 CAGGAACAGATGTGTGTTCACTGGTCGATCTCGTTCTGTGACTGAGCTGTTCCGTGTTTC 474
Query 481 TCGAATCGTGTTCCGTGGATTAGCAAATAAAGGTGCTTTGATGGGAATCAA-GAAGTCGT 539
||||||||| ||||||||||||||| |||||||||||||||||| || || ||| ||||
Sbjct 475 TCGAATCGTTTTCCGTGGATTAGCATCTAAAGGTGCTTTGATGGGGAT-AACGAAATCGT 533
Query 540 CTTGGTAGCTGCATCATGTGACTGATCCAAAGTTAGGGAAGAAGATGATTCTGAAGAAAT 599
|||||||||||||| |||||||||||| | | || |||||| |||||||||||||||
Sbjct 534 CTTGGTAGCTGCATTATGTGACTGATCTA---T--GG-AAGAAGCTGATTCTGAAGAAAT 587
Query 600 GGGAGCAAGGAAAACAAAGAACTTTTGTGGTAAATACAATTACCAAAGTAGCTGTTTGTT 659
|||||||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 588 GGGAGCAAGGAATACAAAGAACGTTTGTGGTAAATACAGTTACCAAAGTAGCTGTTTGTA 647
Query 660 TGATGGTGG---AATCATTTTAACACCATTGCAAAACTTAGTTTGCTTTTCACTAGTGTT 716
||||||||| || |||||| ||||||| ||||||||||||||||||||||||||| |
Sbjct 648 TGATGGTGGTGGAAACATTTTGACACCATCACAAAACTTAGTTTGCTTTTCACTAGTGAT 707
Query 717 GCTCTCT---------A---T-T--CT-AGCAATTC---C----C--GTTGAATAAGTTA 751
||||||| | | | || ||| |||| | | |||||||||||||
Sbjct 708 GCTCTCTCTTTGTTTTACGATCTTGCTCAGCTATTCTAGCAATTCTCGTTGAATAAGTTA 767
Query 752 AACAAAGTCACAAATCTTGCTTCTTTTTAATGATCTCGGTTTTGTAGTT 800
||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 768 TACAAAGTCACAAATCTTGCTTCTTTTTTATGATCTCGATTTTGTAGTT 816
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38931463925
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5