BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg482413 Length=800 Score E Sequences producing significant alignments: (Bits) Value AT2G34520.1 | Symbols: RPS14 | mitochondrial ribosomal protein ... 998 0.0 > AT2G34520.1 | Symbols: RPS14 | mitochondrial ribosomal protein S14 | chr2:14547784-14548758 REVERSE LENGTH=885 Length=885 Score = 998 bits (540), Expect = 0.0 Identities = 740/829 (89%), Gaps = 44/829 (5%) Strand=Plus/Plus Query 1 AGAGAACCCTAAAACCATTTCCGCGGCGGCGTTTCTCCGATTTCCCGAATCAATGGCGAG 60 |||||||||||||||||||||||||||||||||||| || |||||||||||||| Sbjct 3 AGAGAACCCTAAAACCATTTCCGCGGCGGCGTTTCT-CG-------GAATCAATGGCGAG 54 Query 61 TCTCCGAGGAGTCCTGCTCAACGTAACTTCCTATTGCCAGCGTTCTCTCACTCAATCGTC 120 ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 55 TCTCCGAAGAGTCCTGCTCAACGTAACTTCCTATTGCCAACGTTCTCTCACTCAATCGTC 114 Query 121 GCATTCTACCTCGGGGCTATTGTCTCGATCTATGGTGAAGCATCCGAACAATCTCGGTCA 180 | ||||||| |||||| | || || ||||| |||| |||||| |||||||||||||||| Sbjct 115 GTATTCTACGTCGGGGATGTTATCCCGATCGGTGGTCAAGCATGCGAACAATCTCGGTCA 174 Query 181 AGTTCAAGCTAAACATTTCACGACAACGCTTATGAAATCGGGACCGAAGCATAGTGGTAC 240 | ||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 175 AATTCAAGCTAGACATTTCACGACAACGCTTATGAAATCGGGACCAAAGCATAGTGGTAC 234 Query 241 AGAGCAAGGCGTGAAGCGAAACAGTGCCGATCACAGACGTAGATTGCTCGCGGCTAGATT 300 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 235 AGAGCAAGGCGTGAAGCGAAACAGTGCAGATCACAGACGTAGATTGCTCGCGGCTAGATT 294 Query 301 CGAACTGAGAAGAAAGCTATACAAAGCATTTTGCAAAGATCCAGATCTTCCCAGCGAAAT 360 |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 295 TGAACTGAGAAGAAAGCTATACAAAGCGTTTTGCAAAGATCCAGATCTTCCCAGCGAAAT 354 Query 361 GCGAGACAAGAATCGTTATAAGCTCTCGAAATTGCCGAGAAACAGTGCCTTTGCGCGAAT 420 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 355 GCGAGACAAGAATCGTTATAAGCTCTCGAAATTGCCGAGAAACAGTGCCTTTGCGAGAAT 414 Query 421 CAGAAACCGATGTGTGTTCACTGGTCGATCTCGTTCTGTGACGGAGCTGTTTCGTGTGTC 480 ||| ||| |||||||||||||||||||||||||||||||||| |||||||| ||||| || Sbjct 415 CAGGAACAGATGTGTGTTCACTGGTCGATCTCGTTCTGTGACTGAGCTGTTCCGTGTTTC 474 Query 481 TCGAATCGTGTTCCGTGGATTAGCAAATAAAGGTGCTTTGATGGGAATCAA-GAAGTCGT 539 ||||||||| ||||||||||||||| |||||||||||||||||| || || ||| |||| Sbjct 475 TCGAATCGTTTTCCGTGGATTAGCATCTAAAGGTGCTTTGATGGGGAT-AACGAAATCGT 533 Query 540 CTTGGTAGCTGCATCATGTGACTGATCCAAAGTTAGGGAAGAAGATGATTCTGAAGAAAT 599 |||||||||||||| |||||||||||| | | || |||||| ||||||||||||||| Sbjct 534 CTTGGTAGCTGCATTATGTGACTGATCTA---T--GG-AAGAAGCTGATTCTGAAGAAAT 587 Query 600 GGGAGCAAGGAAAACAAAGAACTTTTGTGGTAAATACAATTACCAAAGTAGCTGTTTGTT 659 |||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||| Sbjct 588 GGGAGCAAGGAATACAAAGAACGTTTGTGGTAAATACAGTTACCAAAGTAGCTGTTTGTA 647 Query 660 TGATGGTGG---AATCATTTTAACACCATTGCAAAACTTAGTTTGCTTTTCACTAGTGTT 716 ||||||||| || |||||| ||||||| ||||||||||||||||||||||||||| | Sbjct 648 TGATGGTGGTGGAAACATTTTGACACCATCACAAAACTTAGTTTGCTTTTCACTAGTGAT 707 Query 717 GCTCTCT---------A---T-T--CT-AGCAATTC---C----C--GTTGAATAAGTTA 751 ||||||| | | | || ||| |||| | | ||||||||||||| Sbjct 708 GCTCTCTCTTTGTTTTACGATCTTGCTCAGCTATTCTAGCAATTCTCGTTGAATAAGTTA 767 Query 752 AACAAAGTCACAAATCTTGCTTCTTTTTAATGATCTCGGTTTTGTAGTT 800 ||||||||||||||||||||||||||| ||||||||| |||||||||| Sbjct 768 TACAAAGTCACAAATCTTGCTTCTTTTTTATGATCTCGATTTTGTAGTT 816 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 38931463925 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5