BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482416
Length=1104
Score E
Sequences producing significant alignments: (Bits) Value
AT2G34540.2 | Symbols: | unknown protein; BEST Arabidopsis tha... 1480 0.0
> AT2G34540.2 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT2G34530.1);
Has 35333 Blast hits to 34131 proteins in 2444 species: Archae
- 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants
- 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI
BLink). | chr2:14550658-14552229 FORWARD LENGTH=1100
Length=1100
Score = 1480 bits (801), Expect = 0.0
Identities = 1012/1110 (91%), Gaps = 29/1110 (3%)
Strand=Plus/Plus
Query 1 ATGCAATAAAAATCCAATTTTATTATCATTTTGACTCATAGGAAGAAAAATGGCTTCAAC 60
|||||||||||||||||||||| | | | |||||||||||||||||||||||| ||
Sbjct 1 ATGCAATAAAAATCCAATTTTA-T-T-A-----ACTCATAGGAAGAAAAATGGCTTCTAC 52
Query 61 ATTTCTTCTAGGCCATACTCAGAAACTCACACTTCCTTTTTCTAATTTCACTTCCACACA 120
|||||||| |||||||||||| |||||||| |||||||| ||| ||||||||||||||||
Sbjct 53 ATTTCTTCAAGGCCATACTCAAAAACTCACCCTTCCTTTATCTCATTTCACTTCCACACA 112
Query 121 TAAACCAACTCTTAGATCTCAAAGTCAAAACCCT-TATATTGGCTTCCCCTCCAATGGCG 179
||||||||||||||||| || ||||| | | |||||||| |||||||||||||| |
Sbjct 113 TAAACCAACTCTTAGAT-TC-----CAAAA-CATATATATTGGTTTCCCCTCCAATGGAG 165
Query 180 GTCGAAGCGGCTGTTTGTTCATCAGATCACCAATCACGGTCGCCAAATCAAACAGCAA-A 238
||| |||| || ||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 166 GTCAAAGCCGCCGTTTGATCATCAGATCACCAATCACGGTCGCCAAATCAAACAGCAAGA 225
Query 239 AGTGATTATCACGATGATAAAAAGCTCTTTACGCCATTAAAAATGGCAGCAGGAGCATCC 298
| ||||| ||||||||||||||||| || | |||||| |||||||| || |||||||||
Sbjct 226 A-TGATTCTCACGATGATAAAAAGCAATTAAGGCCATTGAAAATGGCGGCGGGAGCATCC 284
Query 299 CTAGCACTAGCTTGTGCCTTAAGTATCTTCGGGTTTAAGATAAAGAATATGAGCTACACT 358
|||||||||||||| ||| |||||||||| || ||||||||||| |||||||||||||||
Sbjct 285 CTAGCACTAGCTTGCGCCATAAGTATCTTTGGCTTTAAGATAAATAATATGAGCTACACT 344
Query 359 GCTGCCGCAGCTGCCAATCCAAGCGCCGCCGACATGATCATATCCGGGAAGCCGACTTCA 418
|| || ||||||||| |||||||| | |||||||||||||||||||||||||||||||||
Sbjct 345 GCCGCGGCAGCTGCCTATCCAAGCTCTGCCGACATGATCATATCCGGGAAGCCGACTTCA 404
Query 419 GCCGTATCCGCTACTTCCGGTATGTATCCTTTGCCAGCTAAGTTTGCATTGCGGTCTCTC 478
|||| |||||||||||||||||| |||||||| |||||||| || |||||||||||||||
Sbjct 405 GCCGCATCCGCTACTTCCGGTATCTATCCTTTCCCAGCTAAATTCGCATTGCGGTCTCTC 464
Query 479 TTTGAAGTAAGCTCAATGCTTGCTTCGGCTAAACCCATTCCTTCTCAAAGGCCATTTAAT 538
|||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 465 TTTGAAGTTAGCTCAATGCTTGCTTCGGCTAAACCCATTCCTTCTCAAAAACCATTCAAT 524
Query 539 CTTCACAAGCTCCCTTCTTTGCCTTCAAAGGAAGATATTGATTCCATTAAGATGGAGGCG 598
|||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||
Sbjct 525 CTTCACAAGCTCCCTTCTTTGCCTTCAAAGGACGATATTGACTCCATCAAGATGGAGGCG 584
Query 599 GTACGGAAGATGAAGGAAGGAAAATGTGAGGAGGCGGTGCAGCTCCTTCGTGACGCAAAC 658
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 585 GTACGGAAGATGAAGGAAGGAAAATGTGAAGAGGCGGTGCAGCTCCTTCGTGACGCAAAC 644
Query 659 ATGCGATACAAAAACGAGCCTGAGGCCGACTTCAACGTGCAGATGGCTCTCGTTGAGATC 718
|||||||||| |||||||||||||||| |||||||||||||||||||||| ||||| ||
Sbjct 645 ATGCGATACAGAAACGAGCCTGAGGCCAACTTCAACGTGCAGATGGCTCTTGTTGAAATT 704
Query 719 TTAATATTGCTGGAAAGGTATCAAGAAGCTGCTGAGTATAGTTGTCTAAATGACGAGAAT 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 705 TTAATATTGCTGGAAAGGTATCAAGAAGCTGCTGAGTATAGTTGTCTAAATGACGAGAAT 764
Query 779 GCCCAGATTTCTGATGTTCGAATCCCTCTTTATAAGGCAATTATATACACGATGCTAGAC 838
||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 765 GCCCAAATTTCTGATGTTCGGATCCCTCTTTATAAGGCAATTATATACACGATGTTAGAC 824
Query 839 AAAGATACTGAAGCCAAGCAGTGTTGGAAAGAGTTCAGAAAATCTATTGGTGAAGGATTT 898
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 825 AAAGACACGGAAGCCAAGCAGTGTTGGAAAGAGTTCAGAAAATCTATTGGTGAAGGATTT 884
Query 899 GACCCTTTCAGCTTCGAAGAATAATTAGTACTTGTAGATCGATCTATTACCTAAAAATTA 958
|||||||||||||||||||| |||||| ||||| |||||||||| ||||| |||||||||
Sbjct 885 GACCCTTTCAGCTTCGAAGATTAATTAATACTTTTAGATCGATCGATTACTTAAAAATTA 944
Query 959 TTGTCATCCCTAAAA-CATTTTTACCACCAGCAACTAGTGGTGAATAAATT--AAAAAAT 1015
| || | ||||||| |||| || |||||||| ||||||||||||||||| |||||||
Sbjct 945 TC-TCGTGCCTAAAAACATTCTTGCCACCAGCGGCTAGTGGTGAATAAATTTTAAAAAAT 1003
Query 1016 GTTCGAATGTTAGAAAAAACTTCAATCATTCCTACGGATATTCTTCC-ATTGTTGCACTC 1074
||||||||||||||||| ||||| | | ||||||||||||||||| ||||||||||||
Sbjct 1004 GTTCGAATGTTAGAAAA--CTTCA-T--T-CCTACGGATATTCTTCCGATTGTTGCACTC 1057
Query 1075 GCTCACGTTGAATTTGATTTTATGCAATAT 1104
| |||||||| ||||| |||||||||||||
Sbjct 1058 GGTCACGTTGTATTTGTTTTTATGCAATAT 1087
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54116187510
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5