BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482417
Length=1121
Score E
Sequences producing significant alignments: (Bits) Value
AT2G34555.1 | Symbols: ATGA2OX3, GA2OX3 | gibberellin 2-oxidase... 1722 0.0
> AT2G34555.1 | Symbols: ATGA2OX3, GA2OX3 | gibberellin 2-oxidase
3 | chr2:14556988-14558697 FORWARD LENGTH=1137
Length=1137
Score = 1722 bits (932), Expect = 0.0
Identities = 1060/1123 (94%), Gaps = 4/1123 (0%)
Strand=Plus/Plus
Query 1 AACAAGCGACTATAAAATACTGCTAAGAAGACACCCTTTTCACCAAATTCACTCTCTTCG 60
|||||||||||||||| || ||||||||| ||||||||||||||||||||||||||||
Sbjct 3 AACAAGCGACTATAAATTAGTGCTAAGAAAACACCCTTTTCACCAAATTCACTCTCTTTT 62
Query 61 CAACAATCTTTATTCTTCAAAGTT-TTGGTTTAATAGACCAAAAGAGTAGACTATGGTAA 119
|||||||||||||| ||||||||| || |||||| ||||||||||||||||| |||||||
Sbjct 63 CAACAATCTTTATTTTTCAAAGTTCTT-GTTTAAAAGACCAAAAGAGTAGACCATGGTAA 121
Query 120 TTATCTTACAGCCAGCCACTTTTGATAGCAACCTCTATGTTAACCCAAAATGCAAACCGA 179
|| | ||||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct 122 TTGTGTTACAGCCAGCCAGTTTTGATAGCAACCTCTATGTTAATCCAAAATGCAAACCGC 181
Query 180 GTCCGGTTTTAATCCCTGTTATAGACTTAACCGACTCAGACGCCAAAACCCAAATCGTCA 239
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 182 GTCCGGTTTTAATCCCTGTTATAGACTTAACCGACTCAGATGCCAAAACCCAAATCGTCA 241
Query 240 AGGCATGTGAAGAGTTTGGGTTCTTCAAAGTCATCAACCATGAGGTCCGACCCGATCTTT 299
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 242 AGGCATGTGAAGAGTTTGGGTTCTTCAAAGTCATCAACCATGGGGTCCGACCCGATCTTT 301
Query 300 TGTCCCAGTTGGAGCAAGAAGCCATCAAGTTCTTTGCTTCGCCTCACTCTCTCAAAGACA 359
|| | ||||||||||||||||||||||| |||||||||| || |||||||||||||||||
Sbjct 302 TGACTCAGTTGGAGCAAGAAGCCATCAACTTCTTTGCTTTGCATCACTCTCTCAAAGACA 361
Query 360 AGGCAAGTCCACCCGACCCGTTTGGATACGGTACTAAACGGATCGGACCCAATGGTGACG 419
| || ||||||| ||||||||||| |||||||||||| |||| |||||||||||||||
Sbjct 362 AAGCGGGTCCACCTGACCCGTTTGGTTACGGTACTAAAAGGATTGGACCCAATGGTGACC 421
Query 420 TAGGCTGGCTTGAGTATATTCTTCTTAATGCTAATCTTTGCCTTGAGTCTCACAAAACCA 479
| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 422 TTGGCTGGCTTGAGTACATTCTCCTTAATGCTAATCTTTGCCTTGAGTCTCACAAAACCA 481
Query 480 CAGCCGTTTTCCGGCACACCCCTGCAATTTTCAGAGAGGCAGTGGAAGAGTACATGAAAG 539
| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 482 CCGCCATTTTCCGGCACACCCCTGCAATTTTCAGAGAGGCAGTGGAAGAGTACATTAAAG 541
Query 540 AGATGAAGAGAATGTCGAGCAAAGTTCTTGAAATGGTAGAGGAAGAGTTAAAGATAGAGC 599
||||||||||||||||||||||| |||| |||||||||||||||||| ||||||||||||
Sbjct 542 AGATGAAGAGAATGTCGAGCAAATTTCTGGAAATGGTAGAGGAAGAGCTAAAGATAGAGC 601
Query 600 CAAAGGAGAAGCTGAGCCATTTGGTGAAAGTGAAGGAAAGTGATTCGTGTCTGAGGATGA 659
|||||||||||||||||| ||||||||||||||| |||||||||||||| ||||| ||||
Sbjct 602 CAAAGGAGAAGCTGAGCCGTTTGGTGAAAGTGAAAGAAAGTGATTCGTGCCTGAGAATGA 661
Query 660 ACCATTACCCGGAGAAGGAAGAGACTCCGGTCAAGGAAGAGATTGGGTTCGGTGAGCACA 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 662 ACCATTACCCGGAGAAGGAAGAGACTCCGGTCAAGGAAGAGATTGGGTTCGGTGAGCACA 721
Query 720 CTGATCTACAGTTGATATCACTGCTCAGATCAAACGACAC-GAAGGGTTTTCAAATCTGT 778
|||||| ||||||||||||||||||||||||||||||||| || |||||| |||||||||
Sbjct 722 CTGATCCACAGTTGATATCACTGCTCAGATCAAACGACACAGA-GGGTTTGCAAATCTGT 780
Query 779 GTCAAAGATGGAACTTGGGTCGATGTTACACCTGATCACTCCTCTTTCTTCCTTCTTGTC 838
|||||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 781 GTCAAAGATGGAACATGGGTTGATGTTACACCTGATCACTCCTCTTTCTTCGTTCTTGTC 840
Query 839 GGAGATACTCTTCAGGTGATGACAAACGGAAGATTCAAGAGTGTGAAACATAGAGTGGTC 898
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 GGAGATACTCTTCAGGTGATGACAAACGGAAGATTCAAGAGTGTGAAACATAGAGTGGTG 900
Query 899 ACTAATACAAAAAGGTCAAGAATATCGATGATCTACTTCGCAGGTCCTCCTTTAAGCGAG 958
|| |||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 901 ACAAATACAAAGAGGTCAAGGATATCGATGATCTACTTCGCAGGTCCTCCTTTGAGCGAG 960
Query 959 AAGATTGCACCATTGTCATGCCTTGTCCCAAAGCAAGATGATTGCCTTTATAATGAGTTT 1018
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 961 AAGATTGCACCATTATCATGCCTTGTGCCAAAGCAAGATGATTGCCTTTATAATGAGTTT 1020
Query 1019 ACTTGGTCTCAATACAAGTTATCTGCTTACAAGACTAAGCTTGGTGGCTATAGGCTTGGT 1078
|||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct 1021 ACTTGGTCTCAATACAAGTTATCTGCTTACAAAACTAAGCTTGGTGACTATAGGCTTGGT 1080
Query 1079 CTCTTTGAGAGACCACCTCCATTTTCTTTATCCAGTGTTTGAG 1121
|||||||||| || ||||||||||||| |||||| ||||||||
Sbjct 1081 CTCTTTGAGAAACGACCTCCATTTTCTCTATCCAATGTTTGAG 1123
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54969596775
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5