BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482419
Length=1359
Score E
Sequences producing significant alignments: (Bits) Value
AT2G34560.2 | Symbols: | P-loop containing nucleoside triphosp... 2122 0.0
> AT2G34560.2 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr2:14560188-14562950
FORWARD LENGTH=1515
Length=1515
Score = 2122 bits (1149), Expect = 0.0
Identities = 1275/1332 (96%), Gaps = 24/1332 (2%)
Strand=Plus/Plus
Query 1 AAAGATGGCCACCGATGAGCCTTCTCAAACTCGCTGGAGCTTTCTGGAGTTTAAAACGTT 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 75 AAAGATGGCCACCGATGAGCCTTCTCAAACTCGCTGGAGCTTTCTGGAATTTAAAACGTT 134
Query 61 TTATGATGCCAAGTTTGGGAGGAAGAAGCTGCCTGAAGAAGACGAATCCAACAAGGACCA 120
|||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||
Sbjct 135 TTATGATGCCAAGTTTGGGAGGAAGAAGCTGCCTGAAGAAGATGTATCAAACAAGGACCA 194
Query 121 ACCAGAAGATGGATCAT-C--C---AAT---GGTGATGTCAACAACAACTCTTCCCAAGT 171
||||||||||||||||| | | ||| ||||||||||||||||||||||||| |||
Sbjct 195 ACCAGAAGATGGATCATCCAACGGTAATAACGGTGATGTCAACAACAACTCTTCCCCAGT 254
Query 172 CACCAATCAGGATGGTAACACAGGCTTGGCCAATGGCAATGTGATTCGCGAGAAGCCGAA 231
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 255 CACCAATCAGGATGGTAACACAGCCTTGGCCAATGGCAATGTGATTCGCGAGAAGCCGAA 314
Query 232 AAAGTCCATGTTTCCACCTTTTGAATCTGCGGAAACTCGTACTCTCGCTGAGAGTTTGAG 291
||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||
Sbjct 315 AAAGTCCATGTTTCCCCCGTTTGAGTCTGCGGAAACTCGTACTCTCGCTGAGAGTTTGAG 374
Query 292 TAGGGATATCATCCGTGGGAATCCAAATATCAAGTGGGAAAGCATCAAAGGGTTGGAGAA 351
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 375 TAGGGATATCATCCGTGGGAATCCAAATATCAAGTGGGAAAGCATCAAAGGTTTGGAGAA 434
Query 352 CGCGAAAAAGCTGCTCAAAGAAGCTGTGGTGATGCCTATAAAATACCCCACCTACTTTAA 411
||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 435 CGCTAAAAAGTTGCTCAAAGAAGCTGTGGTGATGCCTATAAAATACCCCACGTACTTTAA 494
Query 412 TGGTCTACTAACTCCATGGAAAGGAATTCTTCTTTTTGGTCCTCCTGGTACCGGAAAGAC 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 495 TGGTCTACTAACTCCATGGAAAGGAATTCTTCTTTTTGGTCCTCCTGGTACCGGAAAGAC 554
Query 472 TATGCTTGCAAAGGCTGTTGCTACAGAGTGCAATACAACATTCTTCAATATCTCAGCCTC 531
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 555 TATGCTTGCAAAGGCTGTTGCTACAGAGTGCAATACAACATTCTTCAACATCTCAGCCTC 614
Query 532 ATCTGTTGTTAGCAAATGGAGAGGTGATTCTGAGAAGTTGATAAGAGTTCTTTTCGATCT 591
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 615 ATCTGTTGTTAGCAAATGGAGAGGTGATTCTGAGAAGTTGATAAGAGTTCTGTTCGATCT 674
Query 592 AGCTAGGCATCATGCACCTTCGACAATATTTCTTGATGAGATCGACGCGATCATAAGCCA 651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 675 AGCTAGGCATCATGCACCTTCGACAATATTTCTTGATGAGATCGACGCGATCATAAGCCA 734
Query 652 ACGTGGTGGTGAAGGCCGCAGTGAACATGAAGCTAGCAGGCGTCTCAAAACCGAGCTGCT 711
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 735 ACGTGGTGGTGAAGGCCGCAGTGAACATGAAGCTAGCAGGCGTCTCAAAACCGAGCTGCT 794
Query 712 CATTCAGATGGATGGGTTACAGAAAACGAATGAGCTCGTTTTTGTTTTAGCAGCAACAAA 771
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 795 CATTCAGATGGATGGGTTACAGAAAACGAATGAGCTCGTATTTGTTTTAGCAGCAACAAA 854
Query 772 TCTCCCCTGGGAACTAGATGCAGCTATGCTCCGTCGTCTAGAGAAACGAATTCTTGTACC 831
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 855 TCTCCCCTGGGAACTAGATGCAGCTATGCTCCGGCGTCTAGAGAAACGAATTCTTGTACC 914
Query 832 TTTACCGGATCCAGAAGCAAGAAGAGGAATGTTCGAGATGCTCT-TGCCGTCACAACCAG 890
|||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||
Sbjct 915 TTTACCGGATCCAGAAGCAAGAAGAGGAATGTTCGAGATGCT-TATACCGTCACAACCAG 973
Query 891 GCGATGAGCCATTGCCTCATGATGTGCTGGTTGAGAAATCTGAGGGCTACTCTGGTTCAG 950
| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 974 GTGATGAGCCATTGCCTCATGATGTGTTGGTTGAGAAATCTGAGGGCTACTCTGGTTCAG 1033
Query 951 ACATTCGAATACTTTGTAAGGAAGCTGCGATGCAACCACTGAGACGCACATTGGCTATTT 1010
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1034 ACATTCGAATACTTTGTAAGGAAGCTGCGATGCAACCACTGAGACGCACATTGGCTATTT 1093
Query 1011 TGGAAGACAGAGAAGATGTTGTGCCTGAAGATGAGCTGCCAAAAATTGGACCCATCCTAC 1070
||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
Sbjct 1094 TGGAAGACAGAGAAGATGTTGTGCCTGAAGACGAGCTGCCAAAAATTGGTCCCATCCTGC 1153
Query 1071 CAGAAGACATTGATCGAGCTCTGAGTAACACTCGACCATCGGCTCATCTGCACGCCCATC 1130
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1154 CAGAAGACATTGATCGAGCTCTGAGCAACACTCGACCATCGGCTCATCTGCACGCCCATC 1213
Query 1131 TTTACGACAAGTTCAATGATGATTATGGTAGCCAAATTCT----TAA----G-T--AA-A 1178
|||||||||||||||||||||||||||||||||||||||| ||| | | || |
Sbjct 1214 TTTACGACAAGTTCAATGATGATTATGGTAGCCAAATTCTCAAGTAAATTCGATGTAATA 1273
Query 1179 -ATACATCTATGTCATCTAGAACTTGATCATTATTTGTATGGAAGCATTCACATTACGGA 1237
||||||||||| ||||||||||||| ||||||||||||||||||||| || ||||||||
Sbjct 1274 TATACATCTATGCCATCTAGAACTTGCTCATTATTTGTATGGAAGCATCCAAATTACGGA 1333
Query 1238 TGCTCAAAGAACTTTTCTGTCTTAAATTATGAATAAACGCTCCTACTTGCTTGGGACTCA 1297
||||||| ||||||||||||||||||||||||||||| ||||||| || |||||||||||
Sbjct 1334 TGCTCAATGAACTTTTCTGTCTTAAATTATGAATAAATGCTCCTAGTTCCTTGGGACTCA 1393
Query 1298 GTTTCAGGGTAT 1309
||||||| ||||
Sbjct 1394 GTTTCAGCGTAT 1405
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66917326485
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5