BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482420
Length=973
Score E
Sequences producing significant alignments: (Bits) Value
AT2G34570.1 | Symbols: MEE21 | PIN domain-like family protein |... 1413 0.0
> AT2G34570.1 | Symbols: MEE21 | PIN domain-like family protein
| chr2:14562892-14564782 REVERSE LENGTH=1103
Length=1103
Score = 1413 bits (765), Expect = 0.0
Identities = 874/927 (94%), Gaps = 5/927 (1%)
Strand=Plus/Plus
Query 49 AAGAAGATGAGAGTTAAGAGGCAGAAGAAAAACAGGAGAACCGTGAGATTCTTCACGGTC 108
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 96 AAGAAGATGAGAGTGAAGAGGCAGAAGAAAAACAGGAGAACCGTGAGATTCTTCACGGTC 155
Query 109 TGTTATGGATTCCGACAGCCCTACAAAGTCCTTTGCGACGGCACTTTCGTCCACCATCTT 168
||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 156 TGTTACGGATTCCGTCAACCCTACAAAGTCCTTTGCGACGGCACTTTCGTCCACCATCTT 215
Query 169 GTTTCTAATGAGATCACTCCCGCCGACACTGCTATCTCCGAACTCCTCGGTGGTCCCGTC 228
|| ||||||||||||||||||||||||||||| |||| ||||||||||| |||||||||
Sbjct 216 GTCACTAATGAGATCACTCCCGCCGACACTGCTGTCTCTGAACTCCTCGGAGGTCCCGTC 275
Query 229 AAGCTCTTCACCACCAGATGTGTGATTGCGGAGTTGGAGAAATTGGGGAAAGATTTTGCG 288
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 276 AAGCTCTTCACCACCAGATGTGTGATTGCGGAGTTGGAGAAACTGGGTAAAGATTTTGCG 335
Query 289 GAATCTCTCGAAGCTGCCCAGATGCTTAGTACAGCAACATGTGAGCACGAGGAGGCAAAA 348
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 336 GAATCTCTCGAAGCTGCCCAGACGCTTAATACAGCAACATGTGAGCACGAGGAGGCAAAA 395
Query 349 GCAGCAGATGAGTGTTTGTCAGAGGTGATAGGTATGA-AAAATTCTGAGCATTTCTTCCT 407
||||||| ||||||||||||||||| ||||| | | ||||| ||||||||||||||||
Sbjct 396 ACAGCAGACGAGTGTTTGTCAGAGGTAATAGGGGT-ACAAAATACTGAGCATTTCTTCCT 454
Query 408 CGGTACTCAGGATGCGGAGTTTAGGAGAAAACTTCAGCAGGAGTCTATCGTTCCTCTTGT 467
||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 455 TGGTACTCAGGACGCGGAGTTTAGGAGAAAGCTTCAGCAGGAGTCTATAGTTCCTCTTGT 514
Query 468 GTTTGGTTTAAGGAACATACTGCTGATTGATCAACCGTCTGATTTCCAACGTCAGACCGC 527
||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 515 GTTTGGTCTAAGGAACATACTGCTGATTGATCAACCTTCTGATTTCCAACGTCAGAGTGC 574
Query 528 CAAAGACTCTGAAAATAAGCGCTTAACTATGACCGAGACAGaaaaaaaGATGTTGGTGAA 587
|||||||||||||||||||||||||||||||||||| || ||||||||| ||||||||||
Sbjct 575 CAAAGACTCTGAAAATAAGCGCTTAACTATGACCGATACGGAAAAAAAGTTGTTGGTGAA 634
Query 588 ACGGACTGCGAAAATCATAGCTTCTAATAGAGAAA-AAGGAACAATTGAAAATGAAGAAT 646
||||||||||||||||||||||||||||||| ||| ||| |||||||| |||||||||||
Sbjct 635 ACGGACTGCGAAAATCATAGCTTCTAATAGA-AAAGAAGCAACAATTGCAAATGAAGAAT 693
Query 647 GGGGAATGCCTAGAGTAGTTTCTACAAGAAATGGACTTGGTGTGAAGGATAGACCTCAGT 706
||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 694 GGGGAATGCCTCGAGTAGTTTCTACAAAAAATGGACTTGGTGTGAAGGATAGACCTCAGT 753
Query 707 TCAAGCGAAATAGAGCCAAGGGTCCAAACCCACTTTCATGCATGAAGAAAAAGAAGGAGA 766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 754 TCAAGCGAAATAGAGCCAAGGGTCCAAACCCACTTTCATGCATGAAGAAAAAGAAGGAGA 813
Query 767 AACCTCAATCCAAATCCAAAGCCGATTCTAACTCTGGTGCAcaaaaggaaaagaaagaag 826
| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 814 ATCCTCAATCCAAATCCAAAGCCGATTCTAACTCTAATGCACAAAAGGAAAAGAAAGAAG 873
Query 827 gcgagagcgatacaaaaaagaggtcaagaaaacggtcaaaaaaaggaaagTCTGGTCCGG 886
||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 874 GCGGGAGCGATACACAAAAGAGGTCAAGAAAACGGTCAAAAAAAGGAAAGTCTGGTCCGG 933
Query 887 AGAGAACCGACTGAAAAGATGTTATTTCATATTTAACACTTCTTTAATCGTTACTTTTTC 946
|||||||||| |||||| | ||| ||| |||| |||||| |||| | || ||||||||||
Sbjct 934 AGAGAACCGAGTGAAAACA-GTTGTTTTATATATAACACATCTTGAGTCCTTACTTTTTC 992
Query 947 TACTGCATACAAAAATTTTGGTCACCA 973
|||||||||||||||||||||||||||
Sbjct 993 TACTGCATACAAAAATTTTGGTCACCA 1019
Score = 87.9 bits (47), Expect = 2e-16
Identities = 50/51 (98%), Gaps = 1/51 (2%)
Strand=Plus/Plus
Query 1 aaaaaaaaCTAAAACCCTAATTCCAGCGTCGTCTTCGCGCTCTGA-AAAAA 50
||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 21 AAAAAAAACTAAAACCCTAATTCCAGCGTCGTCTTCGCGCTCTGAGAAAAA 71
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47621971356
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5