BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482422
Length=1332
Score E
Sequences producing significant alignments: (Bits) Value
AT2G34590.1 | Symbols: | Transketolase family protein | chr2:1... 2015 0.0
AT1G30120.1 | Symbols: PDH-E1 BETA | pyruvate dehydrogenase E1 ... 1123 0.0
> AT2G34590.1 | Symbols: | Transketolase family protein | chr2:14568811-14570969
REVERSE LENGTH=1491
Length=1491
Score = 2015 bits (1091), Expect = 0.0
Identities = 1202/1255 (96%), Gaps = 9/1255 (1%)
Strand=Plus/Plus
Query 78 CTCTCTCTGGTTTTCTCGGAAAAATGTCTGCGATACTACTCCAAGGAGCTGGAGCTGGAG 137
|||||| ||||||||||||||||||||||||| | |||||| | | ||||||||||
Sbjct 103 CTCTCTTTGGTTTTCTCGGAAAAATGTCTGCG--A-TACTCC-A--A---GGAGCTGGAG 153
Query 138 CTGCAACGGCTCTCTCGCCGTTTAACTCTATTGATCCCAACAAACTCGTAGTTCCTTCTC 197
||||||||||||||||||||||||| ||||| ||| ||||||||||||| | ||||||||
Sbjct 154 CTGCAACGGCTCTCTCGCCGTTTAATTCTATCGATTCCAACAAACTCGTTGCTCCTTCTC 213
Query 198 GCTCATCTCTTTCAGTGAGGAGCAAGAGATACATTGTTGCCGGATCTGATAGTAAAAGCT 257
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 214 GCTCTTCTCTTTCAGTGAGGAGCAAGAGATACATTGTTGCCGGATCTGATAGTAAAAGCT 273
Query 258 TTGGTTCTAGCCTCATAGTTCGTCGCTCTGAGCCGTTGATACCAAATGCTGTTGCGGCGA 317
|||||||||||||| ||| |||||||||||||||||||||||||||||||||| || |||
Sbjct 274 TTGGTTCTAGCCTCGTAGCTCGTCGCTCTGAGCCGTTGATACCAAATGCTGTTACGACGA 333
Query 318 AGGCAGACACTGCTGCGAGCTCTACTTCATCAAAGCCTGGACATGAGCTATTGCTTTTCG 377
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 334 AGGCGGACACTGCTGCGAGCTCTACTTCATCAAAGCCTGGACATGAGCTATTACTTTTCG 393
Query 378 AGGCTCTTCAAGAAGGTCTAGAAGAAGAGATGGACAGAGATCCACATGTATGTGTCATGG 437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 394 AGGCTCTTCAAGAAGGTCTAGAAGAAGAGATGGACAGAGATCCACATGTATGTGTCATGG 453
Query 438 GTGAAGACGTAGGCCATTACGGAGGCTCATACAAAGTAACCAAAGGGCTAGCTGACAAGT 497
||||||| |||||||||||||||||||||||||||||||| ||||| |||||||| ||||
Sbjct 454 GTGAAGATGTAGGCCATTACGGAGGCTCATACAAAGTAACTAAAGGCCTAGCTGATAAGT 513
Query 498 TCGGCGATCTCAGGGTTCTGGACACTCCAATCTGTGAAAACGCCTTCACCGGTATGGGCA 557
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 514 TTGGCGATCTCAGGGTTCTGGACACTCCAATCTGTGAAAACGCCTTCACCGGTATGGGCA 573
Query 558 TTGGTGCTGCCATGACAGGACTAAGACCCGTCATCGAAGGTATGAACATGGGGTTTCTAC 617
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 574 TTGGAGCCGCCATGACAGGACTAAGACCCGTCATCGAAGGTATGAACATGGGGTTTCTAC 633
Query 618 TCTTAGCCTTCAACCAAATCTCCAACAACTGTGGTATGCTTCACTACACATCCGGTGGTC 677
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 634 TCTTAGCCTTCAACCAAATCTCCAACAACTGTGGTATGCTTCACTATACATCCGGTGGTC 693
Query 678 AATTCACTATCCCGGTTGTAATCCGTGGGCCTGGAGGTGTGGGCCGGCAGCTTGGAGCCG 737
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 694 AATTCACTATCCCGGTTGTTATCCGTGGGCCTGGAGGTGTGGGCCGGCAGCTCGGAGCCG 753
Query 738 AGCATTCCCAGCGTCTCGAGTCATACTTCCAGTCAATTCCTGGGATCCAGATGGTGGCTT 797
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 754 AGCATTCCCAGCGTCTCGAGTCTTACTTCCAGTCAATCCCTGGGATCCAGATGGTGGCTT 813
Query 798 GCTCAACACCTTACAACGCTAAAGGATTGATGAAAGCTGCGATAAGAAGCGAGAATCCTG 857
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 814 GCTCAACACCTTACAACGCTAAAGGATTGATGAAAGCGGCGATAAGAAGTGAGAATCCTG 873
Query 858 TGATTCTGTTTGAACATGTTCTGCTCTATAACCTCAAGGAGAGTATTCCGGATGAAGAAT 917
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 874 TGATTCTGTTTGAACACGTTCTGCTCTATAACCTCAAGGAGAGTATTCCGGATGAAGAAT 933
Query 918 ACATCTGTAATCTGGAAGAAGCGGAAATGGTCAGACCCGGTGAACACATCACGATACTGA 977
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 934 ACATATGTAATCTGGAAGAAGCAGAAATGGTCAGACCCGGTGAACACATCACGATACTGA 993
Query 978 CGTATTCAAGGATGAGGTACCATGTAATGCAGGCTGCAAAGACGCTGGTGAACAAAGGGT 1037
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 994 CGTATTCAAGGATGAGGTACCATGTAATGCAGGCTGCAAAGACGCTGGTGAACAAAGGGT 1053
Query 1038 ATGATCCAGAGGTTATCGACATTAGGTCGTTGAAGCCGTTCGATCTCTACACCATTGGAA 1097
|||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||
Sbjct 1054 ATGATCCAGAGGTTATCGACATAAGGTCGTTGAAGCCGTTTGATCTCTACACAATTGGAA 1113
Query 1098 ACTCCGTGAAGAAGACACACCGGGTTTTAATTGTGGAGGAATGTATGAGAACGGGAGGAA 1157
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1114 ACTCGGTGAAGAAGACACACCGGGTTTTGATTGTGGAGGAATGTATGAGAACGGGAGGAA 1173
Query 1158 TCGGAGCCAGCTTGACGGCTGCAATAAACGAGAACTTTCATGATTACTTGGATGCTCCAG 1217
|||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 1174 TCGGAGCCAGTTTGACGGCTGCAATAAACGAGAACTTTCATGATTACTTAGATGCTCCGG 1233
Query 1218 TGATGTGTTTGTCTTCTCAAGATGTTCCAACTCCTTACGCTGGCACATTGGAGGAATGGA 1277
||||||||||||||||||| ||||| |||||||||||||| || |||||||| |||||||
Sbjct 1234 TGATGTGTTTGTCTTCTCAGGATGTCCCAACTCCTTACGCCGGTACATTGGAAGAATGGA 1293
Query 1278 CGGTTGTTCAGCCAGCTCAGATCGTCACTGCCGTCGAACAACTCTGCCAGTAATT 1332
||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1294 CGGTTGTTCAGCCAGCTCAGATCGTCACTGCCGTCGAACAACTTTGCCAGTAATT 1348
Score = 87.9 bits (47), Expect = 2e-16
Identities = 75/87 (86%), Gaps = 8/87 (9%)
Strand=Plus/Plus
Query 1 CGATTTCTCCGCTCTTCTCCACTCTTCTTCTCTGTTCTATCT-ATCACCATTTTTGTTTA 59
||||||||||||||||||||||||||||||||||||||||| | || |||||||||||
Sbjct 1 CGATTTCTCCGCTCTTCTCCACTCTTCTTCTCTGTTCTATCGCAG-AC-ATTTTTGTTTA 58
Query 60 TAT--ATGCATAC-A-TAATA-ACTCT 81
||| || |||| | ||||| |||||
Sbjct 59 TATGCATACATAATAATAATACACTCT 85
> AT1G30120.1 | Symbols: PDH-E1 BETA | pyruvate dehydrogenase E1
beta | chr1:10584160-10586635 REVERSE LENGTH=1569
Length=1569
Score = 1123 bits (608), Expect = 0.0
Identities = 1043/1250 (83%), Gaps = 41/1250 (3%)
Strand=Plus/Plus
Query 97 AAAAATGTCTGCGATACTACTCCAAGGAGCTGGAGCTGGAGCTGCAACGGC-TCTCTCGC 155
|||||||||| ||||| | |||| |||||||||||| ||| | ||| | | | |||
Sbjct 155 AAAAATGTCTTCGATA--A-TCCATGGAGCTGGAGCT---GCTACGACGACGT-TATCGA 207
Query 156 CGTTTAACTCTATTGATCCCAACAAA--C-TCGTAGTTCCTTCTCGCTCATCTCTTTCAG 212
||||||| || | ||| |||| ||| | |||| | |||||||||| || ||||||||
Sbjct 208 CGTTTAATTCCGTCGATTCCAAGAAACTCTTCGTTGCTCCTTCTCGCACAAATCTTTCAG 267
Query 213 TGAGGAGCAAGAGATACATTGTTGCCGGATCTGAT---AGT-A-AA-AGCTTTGGTTCTA 266
|||||||| ||||||| || || || ||||||||| ||| | || ||||||||||||
Sbjct 268 TGAGGAGCCAGAGATATATAGTGGCTGGATCTGATGCGAGTAAGAAGAGCTTTGGTTCTG 327
Query 267 GCCTCATAGTTCGTCGCTCTGAGCCGTTGATACCAAATGCTGTTGCGGCGAAGGCAGACA 326
| || | |||||||| |||| || ||||| ||||||||||||||| |||||| ||
Sbjct 328 GACTTAGAGTTCGTCACTCTCAGAAATTGATTCCAAATGCTGTTGCGACGAAGG-AG--- 383
Query 327 CTGCTGCGAGCTCTACTTCAT-CAAAGC-CTGGACATGAGCTATTGCTTTTCGAGGCTCT 384
|| | || ||| || | | ||| |||||||||| ||||||||||||||||||||
Sbjct 384 --GC-G-GA----TACGTC-TGC-GAGCACTGGACATGAACTATTGCTTTTCGAGGCTCT 433
Query 385 TCAAGAAGGTCTAGAAGAAGAGATGGACAGAGATCCACATGTATGTGTCATGGGTGAAGA 444
||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 434 TCAGGAAGGTCTGGAAGAAGAGATGGACAGAGATCCACATGTATGTGTTATGGGTGAAGA 493
Query 445 CGTAGGCCATTACGGAGGCTCATACAAAGTAACCAAAGGGCTAGCTGACAAGTTCGGCGA 504
|| |||||||||||||| || ||||| ||||||||||| || ||||| || || || ||
Sbjct 494 TGTTGGCCATTACGGAGGTTCCTACAAGGTAACCAAAGGCCTTGCTGATAAATTTGGTGA 553
Query 505 TCTCAGGGTTCTGGACACTCCAATCTGTGAAAACGCCTTCACCGGTATGGGCATTGGTGC 564
||||||||||| |||||||| || |||||||| || |||||||||||||||||||| ||
Sbjct 554 CCTCAGGGTTCTCGACACTCCTATTTGTGAAAATGCATTCACCGGTATGGGCATTGGAGC 613
Query 565 TGCCATGACAGGACTAAGACCCGTCATCGAAGGTATGAACATGGGGTTTC-TACTCTTAG 623
||||||||| || ||||||||||| || ||||||||||||||||| |||| | ||| | |
Sbjct 614 TGCCATGACTGGTCTAAGACCCGTTATTGAAGGTATGAACATGGG-TTTCCTCCTCCTCG 672
Query 624 CCTTCAACCAAATCTCCAACAACTGTGGTATGCTTCACTACACATCCGGTGGTCAATTCA 683
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |
Sbjct 673 CCTTCAACCAAATCTCCAACAACTGTGGAATGCTTCACTACACATCCGGTGGTCAGTTTA 732
Query 684 CTATCCCGGTTGTAATCCGTGGGCCTGGAGGTGTGGGCCGGCAGCTTGGAGCCGAGCATT 743
| ||||||||||| |||||||| ||||| || ||||| || |||||||| || |||||||
Sbjct 733 CGATCCCGGTTGTCATCCGTGGACCTGGTGGAGTGGGACGCCAGCTTGGTGCTGAGCATT 792
Query 744 CCCAGCG-TCTCGAGTCATACTTCCAGTCAATTCCTGGGATCCAGATGGTGGCTTGCTCA 802
| ||| | | | || || ||||| ||||| || ||||||||||||||||| |||||||||
Sbjct 793 CACAGAGGT-TAGAATCTTACTTTCAGTCCATCCCTGGGATCCAGATGGTTGCTTGCTCA 851
Query 803 ACACCTTACAACGCTAAAGGATTGATGAAAGCTGCGATAAGAAGCGAGAATCCTGTGATT 862
|| ||||||||||| ||||| ||||||||||| || |||||||||||||| |||||||||
Sbjct 852 ACTCCTTACAACGCCAAAGGGTTGATGAAAGCCGCAATAAGAAGCGAGAACCCTGTGATT 911
Query 863 CTGTTTGAACATGTTCTGCTCTATAACCTCAAGGAGAGTATTCCGGATGAAGAATACATC 922
||||| ||||| || ||||| || || |||||||||| || ||||||||||| ||| ||
Sbjct 912 CTGTTCGAACACGTGCTGCTTTACAATCTCAAGGAGAAAATCCCGGATGAAGATTACGTC 971
Query 923 TGTAATCTGGAAGAAGCGGAAATGGTCAGACCCGGTGAACACATCACGATACTGACGTAT 982
||||| || |||||||| || ||||||||||| || || ||||| || || || || ||
Sbjct 972 TGTAACCTTGAAGAAGCTGAGATGGTCAGACCTGGCGAGCACATTACCATCCTCACTTAC 1031
Query 983 TCAAGGATGAGGTACCATGTAATGCAGGCTGCAAAGACGCTGGTGAACAAAGGGTATGAT 1042
|| | |||||||||||||| |||||||| ||||| || ||||||||||||||||||||
Sbjct 1032 TCGCGAATGAGGTACCATGTGATGCAGGCAGCAAAAACTCTGGTGAACAAAGGGTATGAC 1091
Query 1043 CCAGAGGTTATCGACATTAGGTCGTTGAAGCCGTTCGATCT-CTACACCATTGGAAACTC 1101
|| |||||||||||||| ||||| |||| |||||||| || | |||| |||||||||||
Sbjct 1092 CCCGAGGTTATCGACATCAGGTCACTGAAACCGTTCGACCTTC-ACACAATTGGAAACTC 1150
Query 1102 CGTGAAGAAGACACACCGGGTTTTAATTGTGGAGGAATGTATGAGAACGGGAGGAATCGG 1161
|||||||| ||||| |||||||| || |||||||| ||||||||||| || || || ||
Sbjct 1151 GGTGAAGAAAACACATCGGGTTTTGATCGTGGAGGAGTGTATGAGAACCGGTGGGATTGG 1210
Query 1162 AGCCAG-CTTGACGGCTGCAATAAACGAGAACTTTCATGATTACTTGGATGCTCCAGTGA 1220
|| || ||| || ||||| || ||||||||||||||||| ||||| |||||||| ||||
Sbjct 1211 GGCAAGTCTT-ACAGCTGCCATCAACGAGAACTTTCATGACTACTTAGATGCTCCGGTGA 1269
Query 1221 TGTGTTTGTCTTCTCAAGATGTTCCAACTCCTTACGCTGGCACATTGGAGGAATGGACGG 1280
||||||| ||||||||||| ||||| || ||||||||||| ||| ||||||| ||||| |
Sbjct 1270 TGTGTTTATCTTCTCAAGACGTTCCTACACCTTACGCTGGTACACTGGAGGAGTGGACCG 1329
Query 1281 TTGTTCAGCCAGCTCAGATCGTCACTGCCGTCGAACAACTCTGCCAGTAA 1330
| ||||| || ||||||||||| || || ||||| || || |||||||||
Sbjct 1330 TGGTTCAACCGGCTCAGATCGTGACCGCTGTCGAGCAGCTTTGCCAGTAA 1379
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65561911770
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5