BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482423
Length=519
Score E
Sequences producing significant alignments: (Bits) Value
AT2G34600.1 | Symbols: JAZ7, TIFY5B | jasmonate-zim-domain prot... 435 3e-121
> AT2G34600.1 | Symbols: JAZ7, TIFY5B | jasmonate-zim-domain protein
7 | chr2:14573080-14573856 FORWARD LENGTH=677
Length=677
Score = 435 bits (235), Expect = 3e-121
Identities = 282/305 (92%), Gaps = 2/305 (1%)
Strand=Plus/Plus
Query 173 TGGACAAATCAAGCAGCTCTGAAATTTCACAACCAAAGCATGAATCTCAGATATTAACCA 232
||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 220 TGGACGAATCAAGCAGCTCTGAAATTTCACAACCAAAGCAAGAATCTCAGATATTAACCA 279
Query 233 TCTTCTACAACGGGCACATGTGTGTTTCTTCAGATCTTACCCACCTTGAGGCTAAAGCTA 292
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 280 TTTTCTACAACGGGCACATGTGTGTTTCTTCAGATCTTACCCATCTTGAGGCTAACGCTA 339
Query 293 TACTATCGCTAGCGAGTAGAGATGTGGAAGAGAGATCGTTATCGTTGAAAAGCTCAGACG 352
||||||||||||||||||||||||||||||||| ||| ||||| |||| ||| |||||||
Sbjct 340 TACTATCGCTAGCGAGTAGAGATGTGGAAGAGAAATCTTTATCCTTGAGAAGTTCAGACG 399
Query 353 ATTCGGAACCTCCAACACTCCCAAA-ATATTCGCCCCGATTTCATAATCAAAAGGTCTCT 411
|||||| ||||||||| ||||||| | ||||| | ||||||||| ||||||||| ||||
Sbjct 400 GTTCGGATCCTCCAACAATCCCAAACA-ATTCGACTCGATTTCATTATCAAAAGGCCTCT 458
Query 412 ATGAAGAGATCTCTTCGGAGTTTTCTTCAGAAACGAAATGTTCGGATTCAAGCAACTTCC 471
|||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||
Sbjct 459 ATGAAGAGATCTCTTCACAGTTTTCTTCAGAAACGAAGTCTTCGGATTCAAGCAACTTCC 518
Query 472 CCTTA 476
|||||
Sbjct 519 CCTTA 523
Score = 143 bits (77), Expect = 2e-33
Identities = 129/151 (85%), Gaps = 15/151 (10%)
Strand=Plus/Plus
Query 1 ACTGACAC--ACAATC---ATCATCATCATCAAAAACTAC-ACAAGCATATTTACTCACA 54
|||||||| |||||| ||||||||||||||||||| | |||||| |||||||| |
Sbjct 77 ACTGACACATACAATCATGATCATCATCATCAAAAACTGCGACAAGC--CTTTACTCA-A 133
Query 55 ACT-AAGAGATCATGGAGATGCAAACAAAATGCGACTTGGAACTTCGCCTTCTTACTTCT 113
| || ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 134 TTTCAA-AGA-GATGGAGATGCAAACAAAATGCGACTTGGAACTTCGCCTTCTTACTTCT 191
Query 114 TCATATGCTTCTTCTGATTTCCATAGCTCGT 144
|| |||| |||| ||||||||||||||||
Sbjct 192 TCTTATGATTCT---GATTTCCATAGCTCGT 219
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24815668618
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5