BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482424
Length=1079
Score E
Sequences producing significant alignments: (Bits) Value
AT2G34610.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1424 0.0
> AT2G34610.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G30190.1);
Has 342 Blast hits to 279 proteins in 74 species: Archae -
0; Bacteria - 7; Metazoa - 76; Fungi - 18; Plants - 51; Viruses
- 0; Other Eukaryotes - 190 (source: NCBI BLink). | chr2:14575392-14576517
FORWARD LENGTH=1126
Length=1126
Score = 1424 bits (771), Expect = 0.0
Identities = 996/1098 (91%), Gaps = 41/1098 (4%)
Strand=Plus/Plus
Query 11 CCTCAAGGCTCAA-TTCTCAAATCCAATGCCCAACTCATCACGAGCTATCCCTGAAAATG 69
|||||||| |||| || ||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 19 CCTCAAGGTTCAATTTTTCAAATCCAATGCCCAACTTATCAGGAGCTATCCCTGAAAATG 78
Query 70 ACAGAAATGCCCTCGTACGTTGTTGGAAA-CCCTATTTTCGAGCCTTACAAGCCCAAGAA 128
|||||||||||||||||||||| | |||| ||| | |||||||||||||||||||||
Sbjct 79 ACAGAAATGCCCTCGTACGTTG-TCGAAACCCCCCTCTTCGAGCCTTACAAGCCCAAG-- 135
Query 129 ACAACAATACAAATTGTACTCTTCGTTGCTCCCGATCATCTTATCTATCTTCACCTACAT 188
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 136 A-AACAATACAAATTGTACTCTTCGTTGCTCCCGATCATCTTATCTATCTTCACCTACAT 194
Query 189 TTTGATCTTCCACGTTCTCGACGTGTCTCCTTTGTCGATCTTCAACGACACGAAGATCTT 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 195 TTTGATCTTCCACGTTCTCGACGTGTCTCCTTTGTCGATCTTCAACGACACGAAGATCTT 254
Query 249 GTTTGTCATCTCCAACGCACTTATCATCATCATAGCCGCCGATTACGGAGCATTCACTGA 308
||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 255 GTTCGTCATCTCCAACGCACTTATCATCATCATTGCCGCCGATTACGGTGCATTCACTGA 314
Query 309 TAAAGAGAACCACGATTTTTACGGAGAATACACAGCCTCGATGACAAGAGG-TGCACGAG 367
|||||||||| ||||||||||||||||||||||||| |||||| ||| || ||||| ||
Sbjct 315 CAAAGAGAACCTCGATTTTTACGGAGAATACACAGCCGCGATGAGAAG-GGATGCACAAG 373
Query 368 AAAACCCTAGACCGGAAAACTTGGGATATCGGGTG-GATATGGCGGAAGAAATCAAGAAC 426
||||||||||||||||||| | || ||| ||||| | |||||||||||||| |||||||
Sbjct 374 AAAACCCTAGACCGGAAAAGTCGGTCTATGGGGTGAG-TATGGCGGAAGAAACCAAGAAC 432
Query 427 CGTGAGAAACAAGAAGAACTAACGGGAGAAAGAGACTTACAACTTCAGTATTTGCCTAAC 486
|||||||||||||||| || | ||||| |||||||||||| ||||||||||||||||
Sbjct 433 CGTGAGAAACAAGAAGGACCAGTGGGAGCGAGAGACTTACAAGATCAGTATTTGCCTAAC 492
Query 487 AAGAAAGCGAAAGTTCCTGAGAGAATCATTCAAGCCGTGAGCAAGAACCAACCGAGAAAC 546
||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 493 AAGAAAGCGAAAGTTACTGAGAGAATCATACAAGCCGTGAGCAAGAACCAACCGAGAAAC 552
Query 547 ACAA-CTATCCAAAAGT-TCGAGCCAATGACTGAGAAAAACATTCCTATAAAAGCTGCCA 604
| || | || |||||| | |||||| |||||||| |||| ||| ||||| |||||| |
Sbjct 553 A-AAGCCATTGAAAAGTGT-GAGCCAGTGACTGAGCAAAATGTTCATATAATAGCTGCAA 610
Query 605 AAGAAGAAACTTGCAT-G-AA-C--TCT-A--AAC-C----G--TACGGGAGAAGCAAAT 649
||||||||||||||| | || | ||| | ||| | | |||||| |||||||||
Sbjct 611 AAGAAGAAACTTGCAACGCAAGCAATCTGATGAACTCTAAAGCCTACGGGCGAAGCAAAT 670
Query 650 CGGATAAGGCTCGTGGGTCAATGGTAACCAAGGAAAGCCGTCGTCAAGACATCAAACATA 709
|||||||||||||||||||| || || |||||||| | ||||||||||| ||||||||||
Sbjct 671 CGGATAAGGCTCGTGGGTCAGTGATATCCAAGGAACGTCGTCGTCAAGAGATCAAACATA 730
Query 710 GACCTAAAAGTTACGATCGAAGCCAGTCGGATAGCTCGAAATGGATGGTTGTTCACAAGG 769
||| ||||||||||||||| || || ||||||||||||||||||||||||||||||||||
Sbjct 731 GACATAAAAGTTACGATCGGAGTCAATCGGATAGCTCGAAATGGATGGTTGTTCACAAGG 790
Query 770 TGACA-AAGGCTGA-G-G-AGATGGAG-ATGGCGACGAAGAAGTGGGAGAATGTAAGAGA 824
|| | |||||||| | | |||||||| | |||||||||||||||||||||||||| |||
Sbjct 791 GGA-AGAAGGCTGACGAGGAGATGGAGGA-GGCGACGAAGAAGTGGGAGAATGTAAAAGA 848
Query 825 AGAGTCGGAGGAGTTCTCGAAGATGTCAAACGAGGAGTTGAACAGACGAGTCGAAGATTT 884
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 849 AGAGTCGGAGGAGTTCTCGAAGATGTCGAACGAGGAGTTGAACAGACGAGTCGAAGATTT 908
Query 885 CATCCAACGGTTCAATCGAGATATCAAACGACAAATTTAGTTTAATGTAATTTGTTGTTG 944
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 909 CATCCAACGGTTCAATCGAGATATCAAACGACAAATTTAGTTTAATGTAATTTGTTGTTG 968
Query 945 TACCGATACGGCAAATTTAGTCAACCTTTTTGTGTCATTTCCTTC--TTCTTCTT-TTTT 1001
|||| ||||||||||||||||||||||||||||||| |||||||| || || || ||||
Sbjct 969 TACCAATACGGCAAATTTAGTCAACCTTTTTGTGTCGTTTCCTTCCCTTTTT-TTCTTTT 1027
Query 1002 GTCATTCTTGCATCTTGTTTATTAGAGTTGGTAATGAGATCATGGAGATAATTAATCGTT 1061
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1028 GTCATTCTTGCATCTTGTTTATTAGAGTTGGTAATGAGATCATGGAGATA-TTAATCGTT 1086
Query 1062 AGTTTAATTTCAATGGTT 1079
||||||||||||| ||||
Sbjct 1087 AGTTTAATTTCAAGGGTT 1104
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52861173885
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5