BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482428
Length=1807
Score E
Sequences producing significant alignments: (Bits) Value
AT2G34640.1 | Symbols: PTAC12, HMR | plastid transcriptionally ... 2713 0.0
> AT2G34640.1 | Symbols: PTAC12, HMR | plastid transcriptionally
active 12 | chr2:14581886-14584699 REVERSE LENGTH=1935
Length=1935
Score = 2713 bits (1469), Expect = 0.0
Identities = 1672/1769 (95%), Gaps = 18/1769 (1%)
Strand=Plus/Plus
Query 1 AGGAGATAAATGGATAAACCCAAAAACTGACAAGTGAAAACCTTTCGAAGCCaaaaaaaC 60
||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |
Sbjct 32 AGGAGATAAATGGATAAACCCAAAAACTGACAAGTGAAAACCTTTTGAAGCC--AAAACC 89
Query 61 TCCTTCAAAATCAACG-TCCATGATAGAAAAACCTCTTCCAACATAATCTCCTGGTAAAA 119
||||||||||||| | |||||||||||||| |||||||| |||||||||||||||||||
Sbjct 90 CCCTTCAAAATCAA-GCTCCATGATAGAAAACCCTCTTCCTACATAATCTCCTGGTAAAA 148
Query 120 CAAAAAGAAATGATACAGT-G--GGAGTGT-AATGGCGTCAATATCAACCACCACTTGGC 175
||||||| ||| | ||| | |||||| |||||||||||||||||||||||| ||||
Sbjct 149 CAAAAAG---TGAGA-AGTAGAAAGAGTGTAAATGGCGTCAATATCAACCACCACCTGGC 204
Query 176 TCTACCGAGGTAAAGTAGGCACAGAGATTGGAAAGTCCAGTAATTGTCTTGTGCAGAGAC 235
||||||||||| ||||| ||||||| | ||||||||||||||||||| ||||||||||||
Sbjct 205 TCTACCGAGGTCAAGTATGCACAGACAGTGGAAAGTCCAGTAATTGTATTGTGCAGAGAC 264
Query 236 GGGTTAAATGTGGATTTCCAATCAAGACATTACATGTC-GGGATTACTTCTGGGGATCTG 294
||||||||||||| |||||| |||||||||| |||| | |||||||||||| |||||| |
Sbjct 265 GGGTTAAATGTGGGTTTCCACTCAAGACATTGCATG-CTGGGATTACTTCTAGGGATCGG 323
Query 295 TCATTGCGACATTGTATCAAATGTAAGAAAGGGGATGGAGATGGTGATGCAAGTGAAGGC 354
|| |||||||||||||||||||| ||||||| ||||||||||||||||| |||||||||
Sbjct 324 TCTTTGCGACATTGTATCAAATGCAAGAAAGAGGATGGAGATGGTGATGTAAGTGAAGGG 383
Query 355 ACTAAAAAGAGTGAAGAAGGATTTGATTATGTGACTGTTGAGAGGCCTCCTTACTATAGT 414
|||| |||||||||||||||||||| ||||||||||||||||||| ||||||| |||||
Sbjct 384 TCTAAGAAGAGTGAAGAAGGATTTGAGTATGTGACTGTTGAGAGGCATCCTTACCATAGT 443
Query 415 TATATGGATTCAACTTCTGGGAAACTCGAGCCAGCGTCGGGGGCTCGGGCTAGTATTCCA 474
||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||
Sbjct 444 TATATGGATTCAACTTCTGGGAAGCTTGAGCCAGCGTCCGGGGCTCGGGCTAGTATTCCA 503
Query 475 GGTGAAGATTATTGGCCTGAAGGAACTTCGAGCCGGGTTAGAGCTGCTAGGGCTCCTCAA 534
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 504 GGTGAGGATTATTGGCCTGAAGGAACTTCGAGCCGGGTTAGAGCTGCTAGAGCTCCTCAA 563
Query 535 CCAGCTGGTGAGTCTTCGAGTTTCCCTTCGTATGGAAAAAATCCTGGAAGTAGGAGAAAG 594
||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||
Sbjct 564 CCAGCTGGTGAGTCTTCGAGTTTTCCTTCCTATGGAAAGAATCCTGGAAGTAGGAGAAAG 623
Query 595 AAGAATCGGAAAGCAACTGAGGAGAATGTGACTGTTGAAACGAATGATGAAGTATCAGAT 654
|||||| ||||||| |||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 624 AAGAATAGGAAAGCTACTGAGGAGAATGTGACTGTTGAAACGAATGACGAAGTATCCGAT 683
Query 655 TCTGAGGATAGCTCTGAAGAAGAGGAAAATGATTCCTCGGACGGGTTTGTTACCTATAAC 714
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 684 TCTGAGGATAGCTCTGAAGAAGAGGAAAATGATTCCTCGGATGGGTTTGTTACCTATAAG 743
Query 715 AATGAATTTGAGAGAGAAGAAGAGGAGAGTGGTTTCGAATTAGACAAAAAGCTTGGGCGG 774
|||||||||||||||||||||||||||| |||||| |||||||||||||||||||| ||
Sbjct 744 AATGAATTTGAGAGAGAAGAAGAGGAGACTGGTTTTGAATTAGACAAAAAGCTTGGAAGG 803
Query 775 CCACATCCTTTCATCGATCCTACGAAAAAGAAACAAATCGAAAAGACACTCACGGGCGAT 834
|||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 804 CCACATCCTTTCATTGATCCTACGAAAAAGAAACAAATTGAAAAGACACTCACGAGCGAT 863
Query 835 GAATCGTGGTGGAACTGGAGGAAACCGGAGAAAGAACAATGGTCAAGATGGCAAAGAAGA 894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 864 GAATCGTGGTGGAACTGGAGGAAACCGGAGAAAGAACAATGGTCAAGATGGCAAAGAAGA 923
Query 895 CGTCCTGATGTTGAAACGGTTTTTCTCAAGGCAATGGCAGAAACAGGACAAGTGAAGCTC 954
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 924 CGTCCTGATGTTGAAACGGTTTTCCTCAAGGCAATGGCAGAAACAGGACAAGTGAAGCTC 983
Query 955 TATGGGAAAGAACCAACACTCACAGAAACTTCTCTTTATAGAGCAAGAAGGCATCTTTTC 1014
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 984 TATGGGGAAGAACCAACACTCACAGAAACTTCTCTTTATAGAGCAAGAAGGCATCTTTTC 1043
Query 1015 AAGGAAGAGAGGCTGCAAGCTGAGCGAGAGAGATTAGCTAAAGAAGGTCCAATGGCTTTT 1074
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1044 AAGGAAGAGAGGCTGCAAGCTGAGCGAGAGAGATTAGCGAAAGAAGGTCCAATGGCTTTT 1103
Query 1075 TATTCTGAATGGGTTAAAGCATGGAAGAGAGATACGTCGCGAGAAGCTGTACAGAAACAT 1134
|||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||
Sbjct 1104 TATTCTGAATGGGTTAAAGCATGGAAGAGAGACACGTCAAGAGAAGCTGTACAAAAACAT 1163
Query 1135 TTTGAAGAGACAGGTGAAGATGAAAACACACAACTGATTGAGATGTTCTCTCATCAAACA 1194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1164 TTTGAAGAGACAGGTGAAGATGAAAACACACAACTGATTGAGATGTTCTCTCATCAAACA 1223
Query 1195 GATCGAGAATACCGGATAATGATGGGAACTGATATTAGGATCAAGAGAGATCCTTTGGCA 1254
||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1224 GATAGAGAATACCGGATAATGATGGGAACTGATATTAGGATCAAGAGAGATCCATTGGCA 1283
Query 1255 ATGCGGATGAGGGAGGATCAAATTAAGCAAATTTGGGGCGGGGATCCAGTTTACCCGACA 1314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1284 ATGCGGATGAGGGAGGATCAAATTAAGCAAATTTGGGGCGGGGATCCAGTTTACCCGACA 1343
Query 1315 ATTAACTACATTCAAGATCCTAATGCGGTTATGGATTTCAGAGGACCCGATTTTCATGAG 1374
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1344 ATTAACTACATTCAAGATCCTAATGCGGTTATGGATTTCAGAGGACCTGATTTTCATGAG 1403
Query 1375 CCGACACCAAATATGCTTTCTTATTTAAAAGAGAATGGCAAAGTCATCTCAAGAGAGATG 1434
|| |||||||||||||| |||||| |||| ||||||||||||||||||||||||||||||
Sbjct 1404 CCTACACCAAATATGCTCTCTTATCTAAAGGAGAATGGCAAAGTCATCTCAAGAGAGATG 1463
Query 1435 CATGAAGCACTACTAACTAAAGAAAAAACTGAGCAGCTCGAGGTGCCTGACATTGATGAT 1494
|||||||||||||| || ||||| ||||| |||||||||||||| |||||||| ||||||
Sbjct 1464 CATGAAGCACTACTGACAAAAGAGAAAACCGAGCAGCTCGAGGTACCTGACATGGATGAT 1523
Query 1495 GCAATGGCACAAGCTGTTGATATTGGTGAAAACGATGACGAGGAAGATGATGCAGATGTA 1554
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 1524 GCAATGGCACAAGCTGTTGATATTGGTGAAAACGATGACGACGAAGACGATGCAGATGTA 1583
Query 1555 GAAAAAGACGACGAGAAAGTGCTGAGGAATTGGAGTGTCTTGAAGAGTA-CCCCTGAGCT 1613
|||||||||||||||||||||| |||||| ||||||||||||||| | | ||||||||||
Sbjct 1584 GAAAAAGACGACGAGAAAGTGCCGAGGAACTGGAGTGTCTTGAAG-GAAACCCCTGAGCT 1642
Query 1614 TCGCACCGCCAAGCCTACACCAAAGAAGGAAGGTCGGATGTCTCTAGACGAGGCCGTGGA 1673
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1643 TCGCACCGCCAAGCCTAAACCAAAGAAGGAAGGTCGGATGTCTCTAGACGAGGCCGTGGA 1702
Query 1674 TGATTCTGAGAACTTAACTGATTTTCTCATGGACTTTGAAGAGGAAACTGATCCTTAAAC 1733
|||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1703 TGATGCTGAGAACTTAACTGATTTTCTCATGGACTTTGAAGAGGAGACTGATCCTTAAAC 1762
Query 1734 CCCGGTTTTTGTATTTCT-ATGTAAAGAC 1761
| |||||| |||||||| ||||||||||
Sbjct 1763 CT-GGTTTTCGTATTTCTTATGTAAAGAC 1790
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89407170645
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5