BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482433
Length=810
Score E
Sequences producing significant alignments: (Bits) Value
AT2G34690.1 | Symbols: ACD11 | Glycolipid transfer protein (GLT... 1116 0.0
> AT2G34690.1 | Symbols: ACD11 | Glycolipid transfer protein (GLTP)
family protein | chr2:14630307-14632061 FORWARD LENGTH=1021
Length=1021
Score = 1116 bits (604), Expect = 0.0
Identities = 715/765 (93%), Gaps = 22/765 (3%)
Strand=Plus/Plus
Query 46 agagagagaggaa-g-gagagaTCTTCCATGGCGGATTCGGACGCAGATAAGCCACTGAG 103
||||||||| ||| | |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 92 AGAGAGAGA-GAAGGAGAGAGATCTTCCATGGCGGATTCGGAAGCAGATAAGCCACTGAG 150
Query 104 AAAAATCTCAACCGCTTTCAAAGAACTAGCGGTCATCGTGAATTCGCCGAGTCCGGAAGT 163
|||||||||| ||||||||||| ||||||| ||||||||||||| |||| |||||||||
Sbjct 151 AAAAATCTCAGCCGCTTTCAAAAAACTAGCAATCATCGTGAATTCACCGAATCCGGAAGT 210
Query 164 TCCTGTAGCGCAATTCTCTCACGCTTGCTCTCTGGTCTCTCCTCTCTTTGGTTGCCTTGG 223
||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 211 TCCTGTAACGCAATTCTCTCACGCTTGCTCTCTGGTCTCGCCTCTCTTTGGTTGCCTTGG 270
Query 224 AATAGCTTTTAAGTTTGCGGAAATGGACTATGTTGCCAAGGTTGATGATCTTGTGAGGGC 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 271 AATAGCTTTTAAGTTTGCGGAAATGGACTATGTTGCCAAGGTTGATGATCTTGTGAGGGC 330
Query 284 GTCGAGTTCGATATCGACATTAGTGGTAATGATGGACAAAGATATTGAGGCTGATTGTGT 343
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 331 GTCGAGTTCGATATCGACATTAGTGGTAATGATGGACAAAGATATTGAGGCAGATTGTGT 390
Query 344 AAGGAAAGCTGGTAGTCATACTAGAAACCTTTTGAGGGTTAAGCGTGGTCTTGACATGGT 403
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 391 AAGGAAAGCTGGTAGTCATACGAGAAACCTTTTGAGGGTTAAGCGTGGTCTTGACATGGT 450
Query 404 CAAGGTTCTCTTTGAACAGATCATAGCTTCCGAGGGAGATAACTCTTTGAAAGATCCAGC 463
||| ||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||
Sbjct 451 CAAAGTTCTCTTTGAACAGATCATAGCTTCCGAAGGAGATAACTCCTTGAAGGATCCAGC 510
Query 464 AACTAAGTCTTATGCTCAAGTGTTTGCTCCCCACCATGGATGGGCTATACGGAAAGCTGT 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 511 AACTAAGTCTTATGCTCAAGTGTTTGCTCCCCACCATGGATGGGCTATACGGAAAGCTGT 570
Query 524 TTCTCTTGGGATGTACGCTCTTCCCACAAGGGCTCACCTACTTAATTTGCTCAAAGAGGA 583
||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct 571 TTCTCTTGGGATGTATGCTCTTCCCACAAGGGCTCACCTACTTAATATGCTCAAAGAGGA 630
Query 584 TGAGGCGGCGGCTAAGATACATATGCAAAGCTATGTCAATTCATCGGCACCATTAATCAC 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 631 TGAGGCGGCGGCTAAGATACATATGCAAAGCTATGTCAATTCATCGGCACCATTAATCAC 690
Query 644 GTATCTTAATAATCTATTCCTCTCCAAGCAACTCGGTATTGATTGGTGAAGAGCCTGAAA 703
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 691 GTATCTTGATAATCTATTCCTCTCCAAGCAACTCGGTATTGATTGGTGAAGAGCCTGAAA 750
Query 704 AGACTT-ATAATTATTATCACTCTTTAGACAACATCA---A-GT-C--A--T---G-TA- 748
| | |||| |||| | ||||||||||||| || | | || | | | | ||
Sbjct 751 AAAAGGCATAACTATTGTTACTCTTTAGACAAAATAACCTATGTTCTCACATCAAGCTAT 810
Query 749 --A-TGTCATAACAACAGCGACGAAATACATTATGAATAAATTGA 790
| |||||||||||||||||||||||||||| |||||||||||
Sbjct 811 GTAATGTCATAACAACAGCGACGAAATACATTG-GAATAAATTGA 854
Score = 78.7 bits (42), Expect = 8e-14
Identities = 45/46 (98%), Gaps = 1/46 (2%)
Strand=Plus/Plus
Query 1 TCTTGCAGCAAAGTAGATTCCGCGGCAAATCACA-AACACCAATCg 45
|||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1 TCTTGCAGCAAAGTAGATTCCGCGGCAAATCACAGAACACCAATCG 46
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39433805395
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5