BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482434
Length=722
Score E
Sequences producing significant alignments: (Bits) Value
AT2G34700.1 | Symbols: | Pollen Ole e 1 allergen and extensin ... 979 0.0
> AT2G34700.1 | Symbols: | Pollen Ole e 1 allergen and extensin
family protein | chr2:14634134-14635627 REVERSE LENGTH=722
Length=722
Score = 979 bits (530), Expect = 0.0
Identities = 664/725 (92%), Gaps = 24/725 (3%)
Strand=Plus/Plus
Query 1 TCTCTCTTTCTCACTAACAAAGAACAAAAATGGTTTTGGTAATAAAAGCTCTCAAATATC 60
||| ||||| ||||||||||||||||||||||| | |||||| |||||||||||||||||
Sbjct 2 TCTATCTTTTTCACTAACAAAGAACAAAAATGGGTCTGGTAACAAAAGCTCTCAAATATC 61
Query 61 TCTTACTCCTTTCTATCTCCTTGACTTTCATCTACACCAATGAAGTGTCATCCACTTCTC 120
|||||||||||||||| ||||||||||||||||||||||||| ||| |||||| ||||||
Sbjct 62 TCTTACTCCTTTCTATTTCCTTGACTTTCATCTACACCAATGCAGTTTCATCCGCTTCTC 121
Query 121 CGGTGACGACTCCACCGTCTTCGCCGG-TGAAGATGAGCCGGAGACTTGTGGCAGTTGAA 179
| | |||||||||||| ||||||| | ||||||||| ||||||||||||||||||||
Sbjct 122 C---AATGACTCCACCGTCATCGCCGGCT-AAGATGAGCAGGAGACTTGTGGCAGTTGAA 177
Query 180 GGCATGGTTTATTGCAAGTCTTGCAAGTATTCCGGCGTCGATACTCTCTTGGAAGCATCT 239
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 178 GGCATGGTTTATTGCAAGTCATGCAAGTATTCCGGCGTCGATACTCTCTTGGAAGCATCT 237
Query 240 CCTCTTCAAGCACTATGCTTAAGGAGCGACGGTAAAGCTTGCATGCAACAACACAAAGAG 299
| | | || | | |||||||||| |||||||||||||||||||||||||||||
Sbjct 238 -C-C-T------CT-T-C--AAGGAGCGACCGTAAAGCTTGCATGCAACAACACAAAGAG 284
Query 300 AGGTGTGACAATGGAGAC-AAAACAGACAAAAACGGATACTTCTTCATGTTAGCCCCCAA 358
|||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| ||
Sbjct 285 AGGTGTGACAATGGAGACAAAAACAGACAAAAACGGATACTTCTTCATGCTAGCCCCAAA 344
Query 359 AAAACTCACGACCTACGCTTTCCACACGTGCCGGGCTTGGCCCACGAATCCCGGACCCAC 418
||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 345 AAAACTCACCACCTACGCTTTCCACACGTGCCGGGCTTGGCCTACGAATCCTGGACCCAC 404
Query 419 GACTGCAACGATGACATGCACCGTCCCGTCAAAGCTCAACAATGGAATCACTGGTGCTAT 478
|||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||
Sbjct 405 GACTGCAACGATGACATGCACCGTGCCGTCAAAGCTCAACAATGGAATAACCGGTGCTAT 464
Query 479 GCTTAAGCCTTCTAAAACAATCAACATCGGTGAACACGACTACGTTCTCTTCTCTGTTGG 538
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 465 GCTTAAGCCTTCTAAGACAATCAACATCGGTGAACACGACTACGTTCTCTTCTCTGTTGG 524
Query 539 TCCCTTCGCGTTTGAGCCTGCCTGTACTCGTTGAAGACTAGAATTTCGTTTTATGTATTT 598
||||||||||||||||||||||||| ||| |||||||||| | |||||||||||||||||
Sbjct 525 TCCCTTCGCGTTTGAGCCTGCCTGTGCTCTTTGAAGACTATACTTTCGTTTTATGTATTT 584
Query 599 G-TGTGTGGTTGATTGTTATAATGATGATCACTATCTAGTGTTTTTAATGATGTGTCTTG 657
| |||||| ||||||||||||||||||||||||| ||| |||||||| | |||||||
Sbjct 585 GGTGTGTGCTTGATTGTTATAATGATGATCACTA----GTGATTTTAATGTTCTGTCTTG 640
Query 658 TTTGTTTTCTTGGTACGTTTCTATTTAAAATTTGTGTGTGTTGACATTTTAAGATCGTTA 717
||||||||||||||||||||| |||| |||||||||||| |||||||| |||||||||||
Sbjct 641 TTTGTTTTCTTGGTACGTTTCCATTTGAAATTTGTGTGTTTTGACATTATAAGATCGTTA 700
Query 718 CTGTG 722
||||
Sbjct 701 GTGTG 705
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35013200459
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5