BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482437
Length=2691
Score E
Sequences producing significant alignments: (Bits) Value
AT2G34730.1 | Symbols: | myosin heavy chain-related | chr2:146... 3895 0.0
> AT2G34730.1 | Symbols: | myosin heavy chain-related | chr2:14654357-14657621
FORWARD LENGTH=2759
Length=2759
Score = 3895 bits (2109), Expect = 0.0
Identities = 2510/2698 (93%), Gaps = 49/2698 (2%)
Strand=Plus/Plus
Query 1 ATGGAGGAAGAGGTTGTCATGTCTGAGAATGGTAGTTTAGAGTTTCATGATGACACTTTA 60
|||||||||||||| || | ||||||||||||||||||||||||||||||||||||||||
Sbjct 104 ATGGAGGAAGAGGTCGTGAAGTCTGAGAATGGTAGTTTAGAGTTTCATGATGACACTTTA 163
Query 61 GCATCATCAGTTCAGATTAATGGTGTTCTTAAAGAGAATGAGAATCCGGATGTTGATTTT 120
|||||||| | ||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 164 TCATCATCACTCCAGGTTAATGGTGTTCTTAAAGAGAACGAGAATCCGGATGTTGATTTT 223
Query 121 CTTGAGGATTTAGATTCTTACTGGGAAGATATAAATGATCGGTTGACTATCTCACGAGTC 180
|||||||||||||||||||||||||| || ||||||||| |||| ||||||||||||||
Sbjct 224 CTTGAGGATTTAGATTCTTACTGGGAGGACATAAATGATAGGTTAACTATCTCACGAGTG 283
Query 181 GTGAGTGATTCGATTATAAGGGGAATGATTACTGCAATTGAGTCTGAGGCTGCTGAGAAG 240
||||||||||||||||||||||||||| | ||||| ||||||||||| ||||||||||||
Sbjct 284 GTGAGTGATTCGATTATAAGGGGAATGGTAACTGCTATTGAGTCTGATGCTGCTGAGAAG 343
Query 241 ATAGCTCAGAAAGACCTTGAGTTGTCGAGGATTAGGGAGACATTGCTTTTGTACCATGTG 300
|||||||||||||| ||||| ||||| | |||||||||||| |||||| ||||||||||
Sbjct 344 ATAGCTCAGAAAGATCTTGAATTGTCAAAGATTAGGGAGACTTTGCTTCTGTACCATGTT 403
Query 301 GGTTCTGAAGAAAATGAATCCTCTGAGTCTTGTTTGATGCATGATAATAAGGCGTCTTTG 360
||||||||||| ||||||||||||||||| ||||||| |||||| | | | | |
Sbjct 404 GGTTCTGAAGAGAATGAATCCTCTGAGTCCCGTTTGATTCATGATGA-A---C-T-T--- 454
Query 361 GACACTCAAGATGAACTTACTCAAGGATCTTTAAGCAGTCTTaaaaa-aaCCGCGAGGAA 419
|| ||||| || ||| | | | ||||||||||||| || ||||||||
Sbjct 455 -AC--TCAAG--GATCTT-C----G-A-------GCAGTCTTAAAAAGAAA-GCGAGGAA 495
Query 420 ACAGTTGTTGATGCTCGTTGAAGAGCTCACCAATTTGAGAGAGTATATTCACATCAATGG 479
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 496 ACAGTTGTTGATGCTCGTTGAAGAACTCACCAATTTGAGAGAGTATATTCACATCAATGG 555
Query 480 ATCAGGCGCCACTGTCGATGATTCATTGGGTTTAGACAGCAGTCTGCATGAGACCAGGTC 539
|||||| |||||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct 556 ATCAGGTGCCACTGTGGATGATTCATTGGGTTTAGACAGCAGTCCGCATGAGACCAGGTC 615
Query 540 CAAAACTGTCGATAAAATGCTTGATTCCTTGAAGAGCATTCTAGAGACTGTGTTGAAGCG 599
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 616 CAAAACTGTCGATAAAATGCTTGATTCTTTGAAGAGCATTCTAGAGACTGTGTTGAAGCG 675
Query 600 GAAGAATGATATGGAACTTCCCTCCTCGTGGCAGCAGGAGCATGATTGTCAAAAAGAAAT 659
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 676 GAAGAATGATATGGAACTTCCCTCCTCGTGGCAGCAGGAGCATGATTTTCAAAAAGAAAT 735
Query 660 TGAGTCTGCGGTGGTGACTAGTTTTGTTCGGAGTCTCAAGGATGAGTATGAACAGAGATT 719
||||||||| ||||| |||||| || ||||||||||||||||||||||||||||||||||
Sbjct 736 TGAGTCTGCAGTGGTTACTAGTGTTCTTCGGAGTCTCAAGGATGAGTATGAACAGAGATT 795
Query 720 GTTGGACCAAAAAGCTGAATTTGGTGGTACTAGAAGTCTCATACTTGGAAATGTCAAAGA 779
||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct 796 GTTGGACCAAAAAGCTGAATTTGGTGGTAATAGAAGTCTCATACTTGGAAATATCAAAGA 855
Query 780 GATTACTGGTCTGCGCCAGGAACTAGAGGCGATTCGTAAATCGTTTTTGGATCATGAAAA 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 856 GATTACTGGTCTGCGCCAGGAACTAGAGGCGATTCGTAAATCGTTTTTGGATCATGAAAA 915
Query 840 TGGGGACGAGGCAGGGGAGGTAGGGGACCGGAAAAGAGTGGAGCAATTGCACCGCAAGAT 899
|||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 916 CGGGGACGAGGCAGGAGAGGTAGGGGATCGGAAAAGAGTGGAGCAATTACACCGCAAGAT 975
Query 900 GTCGGGAAGCCTTAATTCAGTTTCTTCAGTTTGGGAAAATGGTAAGCATGAAGAGAGTTC 959
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 976 GTCAGGAAGCCTTAATTCAGTTTCTTCAGTTTGGGAAAATGGTAAGCATGAAGAGAGTTC 1035
Query 960 CACTGGCTTAATGCCTGAGTATAATGAGGCTTTAAAACACATGTCACGAGATG-GTTTGA 1018
||||||||||| |||||| |||| ||| | |||| ||||||||| | |||| | | ||
Sbjct 1036 TACTGGCTTAATACCTGAGCATAACGAGACCTTAAGACACATGTCTCCTGATGAGAT-GA 1094
Query 1019 TCAGTCACTTTAAGATCGAGATGAATAAAATGAAAAGAGACCATGATTATGAAATACAAG 1078
||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1095 TCAATCACTTTAAGATCGAGATGAATAAAATGAAAAGAGACCATGATTATAAAATACAAG 1154
Query 1079 GGCTGACAGAGCAATGTTTTACCTTTAAGCGCAAGTATTTGAATTTAACGGAAAGGGGTT 1138
| ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1155 AGTTGACAGAGCAATGCTTTACCTTTAAGCGCAAGTATCTGAATTTAACGGAAAGGGGTT 1214
Query 1139 CTTTTTCTTTTATGGGGAAGGATAAGGAGCTAGAGGCGCTGAAAAAGAAGATCCCATTTG 1198
||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1215 CTTTTTCTTTTGTGGGGAAGGATAAGGAGCTAGGGGCGCTGAAAAAGAAGATCCCATTTG 1274
Query 1199 TCATCTCTAAATTGGATAAGATTTTGATGGAAGATGAAAAGTTGGTGTCTGAAGGCAAGA 1258
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 1275 TCATCTCTAAATTGGATAAAATTTTGATGGAAGATGAAAAGTTTGTGTCTGAAGGCAAGA 1334
Query 1259 ATGATGCTGATGTTAA-GCGCCAACTGGATTCTCTTTTTCTGGAAAATCGTCAACTGAAA 1317
||||||||| | |||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1335 ATGATGCTGGT-TTAAAGCGCCAACTGGATTCTCTTCTTCTGGAAAATCGTCAACTGAAA 1393
Query 1318 GATTCACTTTCAGACGCTGCTGAGAAGATGTCACAGCTGTCTCAGGCT-ACGGCAGATCA 1376
|||||||||||||||||||||||||||||||||||||| ||||||||| | |||||||||
Sbjct 1394 GATTCACTTTCAGACGCTGCTGAGAAGATGTCACAGCTCTCTCAGGCTGA-GGCAGATCA 1452
Query 1377 TCAAGAGTTGATTCGAAAGCTC-AAATCAGATGTTGAGGATTCTCGTGTTGAAGCTTCTA 1435
|||||||||||||||||||||| ||| |||||||||||||||||||| |||||||||||
Sbjct 1453 TCAAGAGTTGATTCGAAAGCTCGAAA-CAGATGTTGAGGATTCTCGTAATGAAGCTTCTA 1511
Query 1436 TTTACGAAGATGTTTATGGGTGTTTTATAACGGAGTTTGTGGGCCAGATTAAATGTGCAA 1495
|||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |||
Sbjct 1512 TTTACGAAGATGTTTATGGGTGTTTTGTGACGGAGTTTGTGGGCCAGATTAAATGTACAA 1571
Query 1496 AACAGGAGACAGATTTAGAGCATAGTATGTTGAAAGAAGCATATGAGTTGTTACTGGAAG 1555
||||||||||||||||||||||||||||||||| |||||||||||| |||||| ||||||
Sbjct 1572 AACAGGAGACAGATTTAGAGCATAGTATGTTGAGAGAAGCATATGAATTGTTATTGGAAG 1631
Query 1556 ATCTTGCGAGTAAAGAAGCCCGTGAAAGCAAGGAGGAGTTTGAAGACTCTTGTGTCGAGT 1615
|||||||||| |||||||| ||| ||||||||||||| |||||||||||||||||| |||
Sbjct 1632 ATCTTGCGAGGAAAGAAGCTCGTAAAAGCAAGGAGGATTTTGAAGACTCTTGTGTCAAGT 1691
Query 1616 CCGTCATGATGGAAGAGTGTTGTTCAGTCATATACAAAGAAGCCGTCAAGGAAGCTCATA 1675
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 1692 CCGTCATGATGGAAGAGTGTTGTTCAGTCATATATAAAGAAGCCGTGAAGGAAGCTCATA 1751
Query 1676 AGAAAATTGTAGAGTTGAACATGCATGTAACAGAAAAAGAAGGAACTCTGAGATCAGAGA 1735
|||||||||| ||||||||| |||||||||||||||||||||| ||||| ||||||||||
Sbjct 1752 AGAAAATTGTTGAGTTGAACTTGCATGTAACAGAAAAAGAAGGTACTCTAAGATCAGAGA 1811
Query 1736 TGGTTGACAAGGAAAGACTGAAAGAGGAGATTCATATGCTGGGGTGTCTCGTCAAGGAGA 1795
|||||||||||||||||||||||||||||||||||| |||||| ||||| || |||||||
Sbjct 1812 TGGTTGACAAGGAAAGACTGAAAGAGGAGATTCATAGGCTGGGTTGTCTTGTTAAGGAGA 1871
Query 1796 AGGAGAATTTAGTCCAAACGGCAGAGAATAACTTGGCTACAGAGAGAAAGAAAGTCGAGG 1855
||||||||||||||||||| || |||||||||||||||||||||||||||||| | ||||
Sbjct 1872 AGGAGAATTTAGTCCAAACAGCTGAGAATAACTTGGCTACAGAGAGAAAGAAAATTGAGG 1931
Query 1856 TAGTCTCTCAACAGATTAACGATCTGCAATCTCAGGTAGAACAGCAAGAAACAGAAATTC 1915
||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 1932 TAGTCTCTCAACAGATTAACGATCTGCAATCTCAGGTGGAACGGCAAGAAACAGAAATTC 1991
Query 1916 AGGATAAAAGT-GAAGCACTGAGAGTTGTTTCGGCACGCGAGTTAGAGAAAGTAGAAGGT 1974
||||||| | | ||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 1992 AGGATAAGA-TAGAAGCACTGAGCGTTGTTTCGGCACGCGAGTTAGAGAAAGTAAAAGGT 2050
Query 1975 TATGAGACGAAGATATCCAATTTGAGAGAAGAGCTAGAATTAGCAATAGAGAGTTTGAAG 2034
||||||||||||||||||| |||||||||||| | ||| |||||| |||||||||||||
Sbjct 2051 TATGAGACGAAGATATCCAGCTTGAGAGAAGAGTTGGAACTAGCAAGAGAGAGTTTGAAG 2110
Query 2035 GAAATCAAAGATGAAAAAAGGAAAACCGAGGAGAAGTTATCAGCGACAAAAGCAGAGAAA 2094
||||| |||||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct 2111 GAAATGAAAGATGAAAAAAGGAAAACCGAGGAAAAGTTATCAGAGACAAAAGCAGAGAAA 2170
Query 2095 GAGACACTTAAAAAGCAACTTGTGTCTCTGGACTTAGTCGTTCCTCCTAAATTGATAAAA 2154
||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2171 GAGACACTTAAGAAGCAACTTGTGTCTCTGGACTTAGTCGTTCCTCCTCAATTGATAAAA 2230
Query 2155 GGGTTCGACATTCTAGAGGGTTTGATAGCAGAAAAGATGCAAAAAACGAATTCGAGGTTG 2214
||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 2231 GGGTTCGACATTCTAGAGGGTTTGATAGCAGAAAAGACGCAAAAAACGAATTCTAGGTTG 2290
Query 2215 AAAAACATGCAGAGTCAATTGAGTGATCTGTCACATCAAATCAATGAAGTCAAGGGGAAA 2274
|||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 2291 AAAAACATGCAGAGTCAACTGAGTGATCTGTCACATCAGATCAATGAAGTCAAGGGGAAA 2350
Query 2275 GCATCGACGTACAAGCAACGGCTGGAGAAGAAGTGTTGTGACCTCCAGAAGGCCGAGACT 2334
||||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||
Sbjct 2351 GCATCTACGTACAAGCAACGGCTGGAGAAGAAGTGTTGTGACCTCAAGAAGGCTGAGGCT 2410
Query 2335 GAGGTTGATCTTCTTGGAGATGAGGTTGAAACTCTCTTGGATCTTCTTGAGAAAATATAT 2394
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2411 GAGGTTGATCTTCTTGGAGATGAGGTTGAAACTCTTTTGGATCTTCTTGAGAAAATATAT 2470
Query 2395 ATCGCTCTCGATCATTATTCTCCAATCCTAAAGCACTACCCTGGCATCATTGAGATTTTG 2454
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2471 ATCGCTCTCGATCATTACTCTCCAATCCTAAAGCATTACCCTGGCATCATTGAGATTTTG 2530
Query 2455 AGACTTGTCCGGAGAGAACTTAGCGGAGAATCAAAGAGACCATCAGATTGATAAGTCGGA 2514
|| ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 2531 AGGCTTGTCCGGAGAGAACTTAGCGGAGAATCAAAGAGACCATCGGGTTGATAAGTCGGA 2590
Query 2515 TATCTTTCACACTAGTTTATTTCTGTTTCTTTCTGTACAGATCTCTCAGGCTTATGTAAT 2574
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2591 TCTCTTTCACACTAGTTTATTTCTGTTTCTTTCTGTACAGATCTCTCAGGCTTATTTAAT 2650
Query 2575 GTTGATGATGTTTAGTTTTGTTCAGTAGATAGGTTTTGATAA-TGTACTGTCATGAATTC 2633
| || ||||||||||||||||||||||| ||||||||||||| ||||||||||| || |
Sbjct 2651 GCTGTTGATGTTTAGTTTTGTTCAGTAGGTAGGTTTTGATAAATGTACTGTCATCAACT- 2709
Query 2634 GAAAAATGTGATGTTTGATCACCGGATCTTTCAGTCTTAGAATACAATTGGATTACAT 2691
||| ||| | | ||||||||||||||||| |||||||||||| |||| ||||||
Sbjct 2710 GAA---TGT--T-T--GATCACCGGATCTTTCAATCTTAGAATACAGTTGGGTTACAT 2759
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 133644736152
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5