BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482439
Length=2134
Score E
Sequences producing significant alignments: (Bits) Value
AT2G34750.1 | Symbols: | RNA polymerase I specific transcripti... 3086 0.0
AT1G30590.1 | Symbols: | RNA polymerase I specific transcripti... 1068 0.0
> AT2G34750.1 | Symbols: | RNA polymerase I specific transcription
initiation factor RRN3 protein | chr2:14660299-14664268
REVERSE LENGTH=2186
Length=2186
Score = 3086 bits (1671), Expect = 0.0
Identities = 1995/2149 (93%), Gaps = 32/2149 (1%)
Strand=Plus/Plus
Query 1 AAAAAACCATAGCGAAGGAGTGGAAAACGAAGACCGGAGTTATCAGAACGGGACAGTGAC 60
||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||
Sbjct 30 AAAAAACCATAGCGAAGGAGTAAAAAACGAAGGCCGGAATTATCAGAACGGGACAGTGAC 89
Query 61 AAGGG-TTGCGTGGAGCTGACGGAGCCTTTCAATTATTCATCCTTGAAAGTTCCGA-ACT 118
||||| || | | ||||||||||| ||||||||||||||||||| ||||||||| | |||
Sbjct 90 AAGGGTTTCCCT-GAGCTGACGGACCCTTTCAATTATTCATCCTCGAAAGTTCC-ACACT 147
Query 119 TT-GACCAACTTGAAGTAGCAGCACCATTTACA-TAAGTCCAGAGAGGATGGGAGCAGTA 176
|| | ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 148 TTCG-GCAACTTGAAGTAGCAGCACGATTTACATTAAGTCCAGAGAGGATGGGAGCAGTA 206
Query 177 GAGCTTCTAAGTGATCCATCGAGCTTATACACAGT-G-G-ACTATGTGGACAACGTTGAT 233
|||||| | ||||||||||||||||||| |||||| | | ||||||||||||||||||||
Sbjct 207 GAGCTTATGAGTGATCCATCGAGCTTATGCACAGTCGAGAACTATGTGGACAACGTTGAT 266
Query 234 TTATCTGACACAG-ATTTGGTGCAGACCGTGAGAAAGGCCCTTACATCTGTCAAAACTGG 292
|||||||| || | | ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 267 TTATCTGATAC-GCAATTGGTGCAGACCGTGAGAAAGGCTCTTACATCTGTCAAAACTGG 325
Query 293 GGACTCAGACCTTTACAGTGAGCTTGTTGGAGTTATTAACA-AGGACATCAAAGAATTTA 351
||||||||||||||| |||||| | |||||||||| | || |||||||||||||||||
Sbjct 326 GGACTCAGACCTTTATAGTGAGATGGTTGGAGTTA-TGGCACGGGACATCAAAGAATTTA 384
Query 352 GGGATCCCGATGCAGTGGCGCAGCTTGAGACAGTCTTGAAGGCTCTGTCAGGCTCTGTGG 411
|||||| |||| ||||||||||||||||||||||||||| ||||| |||||| ||||||
Sbjct 385 AGGATCCTGATGTAGTGGCGCAGCTTGAGACAGTCTTGAAAGCTCTATCAGGCGCTGTGG 444
Query 412 CTTGCATAGATATCGTTCACCATCAAAAGCTTCTTTCTTCACTTTTTGGAATGAAATTGT 471
||||||||||| || ||||||||||||||||||||||| | |||||| ||||||||||||
Sbjct 445 CTTGCATAGATGTCCTTCACCATCAAAAGCTTCTTTCTGCGCTTTTTCGAATGAAATTGT 504
Query 472 GGGACCACAGACCTGTTGTCATGGATGCATTGGTGAACCTAGTCATATCACTGGCTGTCA 531
||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 505 GGGACCACAGACCTGATGTCATGGATGCATTGGTGAACCTTGTCATATCACTGGCTGTCA 564
Query 532 CTCGTGGAAAGTATCTGGACCCTTGTCTGAATATGCTTGTAAGCAACTTCGTTGCGCCTC 591
|| ||||||||||| | ||| |||||||||||||||| ||||||||||||||| | ||||
Sbjct 565 CTAGTGGAAAGTATTTAGACTCTTGTCTGAATATGCTCGTAAGCAACTTCGTTCCACCTC 624
Query 592 CTTCGGTAGTAAATAATCTTTCGCACCCCCGTGTACTAAACAAGAAGATAGAAGTTCTTT 651
||| |||||| ||||| ||||||||| ||||| ||||||||||||||||||| |||||||
Sbjct 625 CTTGGGTAGTGAATAACCTTTCGCACTCCCGTATACTAAACAAGAAGATAGACGTTCTTT 684
Query 652 CTCGGGTGCATGCAGCGCTTCTGAAAATATCTATTTTGGTTCCTCTTACTCCCTCAAGAT 711
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 685 CTCGGGTGCATGCAGCGCTTCTGAAAATCTCTATTTTGGTTCCTCTTACTCCCTCAAGAT 744
Query 712 TAGTGCCAATGCTCTTTCAGGAAATGCCCAAAAAAG-ACAAAAAGGACCATTCGATAGTG 770
|||||||||||||||| ||| |||||||| || | | |||||||||||||||||||||||
Sbjct 745 TAGTGCCAATGCTCTTCCAGCAAATGCCC-AAGATGCACAAAAAGGACCATTCGATAGTG 803
Query 771 ATATATGTGGAGAGCTTATTAAAGTTGGAGAATAGCCCAATCGGGCAAGTTGGTGGCAGC 830
||||||||||||||||||||||| |||||||||||| |||| ||||||||||||||||||
Sbjct 804 ATATATGTGGAGAGCTTATTAAAATTGGAGAATAGCTCAATAGGGCAAGTTGGTGGCAGC 863
Query 831 ATGATTCTTGGTGTGGTGATGGAGAGGCTGCGAGATTTGGATTTAGAGATTGGATGGGAT 890
|||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 864 ATGATTCTTGGTATGGTGATGGAGAGGCTGCGAGATTTGGATTTAGAGATTGAATGGGAT 923
Query 891 GATATTCCACAAGATGACTCTAGTAGAGGCATGTTTGATATGGAACTTGAAGACGCAGTT 950
||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |
Sbjct 924 GATATTCCACAAGATGACTCTAGTAGAGGAATGTTTGATATGGAACTTGAAGATGCAGCT 983
Query 951 GAAGGCTTTATAAATGAAGGAGACGAGCTTCCTGTGGGACCTCTAAAGCAGGATTCATCA 1010
|||||| ||| ||||| |||||||||||||| ||||||||||||||||||||| |||||
Sbjct 984 GAAGGCACTATGAATGATGGAGACGAGCTTCCAGTGGGACCTCTAAAGCAGGATACATCA 1043
Query 1011 GATGGAAGTGTATTCTCTAAGTTGTTGGACAAATTGATGGTCGTAGCTTTTGAGCATCTT 1070
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1044 GATGGAAGTATAGTCTCTAAGTTGTTGGACAAATTGATGGTCGTAGCTTTTGAGCATCTT 1103
Query 1071 GAATCCTGTCAAAATGATGGTCGTTTGGATCAGGTGTTTGAAATCCTCTTGGAGTCATTT 1130
||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 1104 GAATCCTGTCAAAATGATGGTCGTTTGGATCAGGTGTTTGAAAGCCTCTTCAAGTCATTT 1163
Query 1131 GAGAACTTCATTCTGAATACATACAAATCAAAATTCACCCAGTTTCTGATGTTCTATGCC 1190
|| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 1164 GAAAACTTCATTCTGAACACATACAAATCAAAATTCACCCAGTTTCTGATATTCTATGCC 1223
Query 1191 TGCTCACTGGATCCTGAAAATTGTGGTGTGAAATTTGCAAGTAAGCTGGTGGAGATTTTT 1250
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 1224 TGCTCACTGGATCCTGAAAATTGTGGTGTGAAATTTGCTAGTAAGCTAGTGGAGATTTTT 1283
Query 1251 CTCTCCAGCAACAAGCATCTAGCTACTAGAATGAGTGCGGTGGCTTATCTTGCTAGCTTC 1310
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1284 CTCTCCAGCAACAAGCATGTAGCTACTAGAATGAGTGCGGTGGCTTATCTTGCTAGCTTC 1343
Query 1311 TTGGCTCGTGGAAAGTTTTTGCCGGTTTCCTTTGTGGCTAGCATGTTGAAAAGGTTGATA 1370
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1344 TTGGCTCGTGGAAAGTTTTTGCCTGTTTCCTTTGTGGCTAGCATGTTGAAAAGGTTGATA 1403
Query 1371 GATGAGTGTGTGGGTTACTGCAGAACTTGCAATGATGATATTAGGCCTGAAGCACATCAG 1430
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1404 GATGAGTGTGTGGGTTACTGCAGAACTTGCAATGATGATACTAGGCCTGAAGCACATCAG 1463
Query 1431 ATTTTCTTCTCCGGATGTCAGGCAATCATGTATGTGCTCTGCTTCCGGATGAGGTCCATC 1490
||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 1464 ATTTTCTTCTCCGGATGTCAGGCAATCATGTATGTGCTCTGCTTCAGGATGAGATCCATC 1523
Query 1491 CTGGATGTTCCTCGCCTTCGGTCCCAGCTTACACCATTGGAGTCAATTTTAATGCACAAG 1550
|||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1524 TTGGATGTTCCTCGCTTTCGGTCCCAGCTTACACCATTGGAGTCAATATTAATGCACAAA 1583
Query 1551 CTAAACCCATTGAGGGTATGCCTTCCATCAGTAGTTGCGGAGTTCCTTAGACAAGCTAAA 1610
||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1584 CTAAACCCATTGATGGTATGCCTTCCATCGGTAGTTGCGGAGTTCCTTAGACAAGCTAAA 1643
Query 1611 GCAGGTGGTCTGTTCATCGTCTCAGACTCGTTCATTTTCGATGACCTACTTGAGTCTGAG 1670
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1644 GAAGGTGGTCTGTTCATCGTCTCAGACTCGTTCATTTTCGATGACCTACTTGAGTCTGAG 1703
Query 1671 CTCTCCCGTGCTTTTGGCGGGTGTGAGAGGCTTGATACGTTCTTCCCATTTGACCCTTGC 1730
|| ||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||
Sbjct 1704 CTTTCCCGTGCTTTTGGCGGGTTTGAGAGGCTGGATACATTCTTCCCATTTGACCCTTGC 1763
Query 1731 TTGCTCAAAA-CCTCAAACAGCTTTATCTCCCGGAATTTCATCTACTGGTCAATGGTGAG 1789
||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 1764 TTGCT-AAAATCCTCAAACAGCTTTATCTCCCCAAATTTCATCTACTGGTCAATGGTCAA 1822
Query 1790 TGCGACCTATGATGAATATGAAGAAGATGATGATTATGATGCTGAGGTGATCGTGAACGG 1849
||||||||||| ||| |||| || |||| | |||||||||||||||||||||| ||
Sbjct 1823 AGCGACCTATGACGAAGATGATGA---TGAT-A--ATGATGCTGAGGTGATCGTGAATGG 1876
Query 1850 AGATGAGGACAGTGACGAAGGGGACGAGGCTGATCTTGACTATGCCCTGAACAAAATGTC 1909
|||||||||||||||||||| ||||||||||||||||| || ||||||||||| |||||
Sbjct 1877 AGATGAGGACAGTGACGAAGATGACGAGGCTGATCTTGATTACGCCCTGAACAAGATGTC 1936
Query 1910 CATAACGCCTAAGCACTCTTTCAAGAACAAGATGGAAAGAGACAGACTCTTAAGAATGCC 1969
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1937 CATAACGCCTAAGCACTCTTTCAAGAACAAGATGGAAAGAGACAGACTTTTAAGAATGCC 1996
Query 1970 TTCCAGAATCAGACCCTCCACTAGTCCTGAATCCTTGTGATTCTACTATACGCATTTTTG 2029
|||||| |||||||| || || ||||||||||||||||||||||||||||| ||||||||
Sbjct 1997 TTCCAGGATCAGACCGTCAACGAGTCCTGAATCCTTGTGATTCTACTATACACATTTTTG 2056
Query 2030 TAACAATATGTAACAGTGATTCAACACG-GAGCTTATTATTGTATGAAACACTGTTTGTT 2088
|| ||||||||||||||||||| || | || | ||||||||||||||||| ||||||||
Sbjct 2057 TAGCAATATGTAACAGTGATTCGACT-GAGAACATATTATTGTATGAAACAATGTTTGTT 2115
Query 2089 TTCCTTTACAAAAA-CTACTTAA-ACTGTGATTCAC-TAAAAGAAACAT 2134
||||||| |||||| || ||||| | |||| ||||| ||| |||||||
Sbjct 2116 TTCCTTT-CAAAAAACTGCTTAATA-TGTGGTTCACCTAAT-GAAACAT 2161
> AT1G30590.1 | Symbols: | RNA polymerase I specific transcription
initiation factor RRN3 protein | chr1:10835794-10840005
REVERSE LENGTH=2303
Length=2303
Score = 1068 bits (578), Expect = 0.0
Identities = 1440/1838 (78%), Gaps = 131/1838 (7%)
Strand=Plus/Plus
Query 220 TGGACAACGTTG-ATTTATCTGACACAGATTTGGTG-CAGACCGTGAGAAAGGCCCTTAC 277
||||||||| || || || | ||||||||||||||| | |||| |||||||||||| |
Sbjct 353 TGGACAACGCTGAATATA-CCGACACAGATTTGGTGTTTG-CCGTTAGAAAGGCCCTTGC 410
Query 278 ATCTGT-CAAAACTGGGGACT-CAGACCTTTACAGTGAGCTTGTTGGAGTTAT-TAACAA 334
|||||| ||||| ||| || | | ||| ||| ||| ||||| ||| || | |
Sbjct 411 ATCTGTCCAAAA-TGGAGA-TACCGACGATTATAGTCAGCTTAAAACAGTGATGT-GC-C 466
Query 335 GGACATCAAAGAATTTAGGGATCCCGATGCAGTGGCGCAGCTTGAGACAGTCTTG-AAGG 393
||| |||| | ||| |||||||||||| |||||||||||||||||| || |
Sbjct 467 TTACA--GAAGACGCT---GATTTCGATGCAGTGGCACAGCTTGAGACAGTCTTGAAAAG 521
Query 394 CTCTGTCAGGCTCTGTGGCTTGCATAGATATCGTTCACCATCAAA-AGCTTCTT---TCT 449
||| |||| || || ||||| |||||| | ||||| ||| ||| | |||||| ||
Sbjct 522 -TCTATCAGTTTCCGTTGCTTGGATAGATTTAGTTCATCAT-AAAGATCTTCTTGAAGCT 579
Query 450 -TCA-CTTTTTGGAATGAAATTGTGGGACCACAGACCT-GTTGTCATGGATGCATTGGTG 506
| | | || ||| || || || ||||||||| | ||| |||||||||||||||
Sbjct 580 ATGAGC-TTGTGGTAT--CATAGT-----CACAGACCTAG-TGTAATGGATGCATTGGTG 630
Query 507 AACCTAGTCATATCACTGGCTGTC-ACTCGTGGAAAGTATCTGGACCCTTGTCTGAATAT 565
||||| ||||||||||||| | | ||| ||||||| |||||||| |||||| |||||||
Sbjct 631 GACCTAATCATATCACTGGCCG-CTACTAGTGGAAAATATCTGGATCCTTGTTTGAATAT 689
Query 566 GCTTGTAAGCAACTTC-GTTGC-GCCTCCTTCGGTAGTAA--ATAATCTTTCGC-ACCCC 620
||| ||||| || ||| | | | ||| ||| | ||| |||| |||| | | |||
Sbjct 690 GCTCGTAAGAAATTTCAG-T-CAACCTACTT---T--TAAGCATAAAGTTTCACAAACCC 742
Query 621 CGTGTACT-AAACAAGAAGATA-GAAGTTCTTTCTCGGGTGCATGCAGCGCTTCTGAAAA 678
| || | ||| |||| | | ||||||| | | |||||||||||||| |||| || |
Sbjct 743 AAT-TAGTCAAA-AAGATG-CAGGAAGTTCATCCACGGGTGCATGCAGCCCTTCACAAGA 799
Query 679 TATC-TATTTTGGTTCCTCTTACTCCCT-CAAGATTAGTGCCAATGCTCT-TTCAGGAA- 734
| || || ||| |||||||| |||||| || |||||| | || || | || |||
Sbjct 800 TTTCTTA-TTTAATTCCTCTTGCTCCCTGGAA-TTTAGTGTCTATACT-TGCGCA-GAAC 855
Query 735 ATGCCCAAAAAAGACAAAAAGGACCATTCGATAGTGATATATGTGGAGAGCTTATTAAAG 794
|||| |||| ||||||||||||| ||| ||||||| ||||||||| | | | || | |
Sbjct 856 ATGCGTAAAATTGACAAAAAGGACCCTTCTATAGTGACATATGTGGATAACCTGTTGAGG 915
Query 795 TTGGAGAATAGCCCAATCGG-GCAAGTTGGTGGCAGCATGATTCTTGGTG-TGGTGATGG 852
|||||||||||| ||||||| | |||||| ||||||| |||||||| || |||| ||||
Sbjct 916 TTGGAGAATAGCTCAATCGGAG-AAGTTGTTGGCAGCGTGATTCTT-ATGATGGTAATGG 973
Query 853 AGAGGCTGCGAGATTTGGATTTAGAGATTGGATGGGATGATATTCCACAAGATGACTCTA 912
||||| ||| |||||| ||||| | | | | | ||||| | ||||||||||
Sbjct 974 AGAGGATGCTAGATTTAGATTT-G-G-TAAG-T-GGATG----T------GATGACTCTA 1018
Query 913 GTAGAGGCATGTTTGATATGGAACTTGAAGACGCAGTTGAAGGCTTTATAAATGAAGGAG 972
| |||||||||||||||||||||||||||| ||||||||| || ||| ||||||||||
Sbjct 1019 ATGGAGGCATGTTTGATATGGAACTTGAAGATGCAGTTGAAAGCACTATGAATGAAGGAG 1078
Query 973 ACGAGCTTCCTGTGGGACCTCTAAAGCAGGATTCATCAGATGGAAGTGTATTCTCT-AAG 1031
||||| |||| ||||| ||||||| || || | |||| ||||| |||| ||||| ||
Sbjct 1079 ACGAGTTTCCAGTGGGGGCTCTAAAACAAAATACTTCAGGTGGAAATGTAGTCTCTGAAC 1138
Query 1032 TTGTTGGACAAATTGATGGTCGTAGCTTTTGAGCATCTTGAATCCTGTCAAAA-TGATGG 1090
| ||||||||||||||||||| || |||| | ||||| |||||||||||||| | ||
Sbjct 1139 T-GTTGGACAAATTGATGGTCCTATTTTTTCATCATCTAGAATCCTGTCAAAACTC-TGA 1196
Query 1091 TCGTTTGGATCAGGTGTTTGAAATCCTCTTGGAGTCATTTGAGAACT-TCATTCTGAATA 1149
|||||||||| |||| |||||||||||||| |||| || ||||||| | |||||||| |
Sbjct 1197 TCGTTTGGATGAGGTATTTGAAATCCTCTTTAAGTCGTTCGAGAACTAT-ATTCTGAACA 1255
Query 1150 CATACAAATCAAAATTCACCCAGTTTCTGATGTTCTATGCCTGCTCACTGGATCCTGAAA 1209
|||||||| ||||||| | |||||||||||||||||||| |||||||| ||||||||||
Sbjct 1256 CATACAAAACAAAATTTTCACAGTTTCTGATGTTCTATGCATGCTCACTAGATCCTGAAA 1315
Query 1210 ATTGTGGTGTGAAATTTGCAAGTAAGCTGGTGGAGATTTTTCTCTCCAGCAACAAGCATC 1269
|||||||||||| |||||| ||||||||| |||| || | |||||||||||||| |||
Sbjct 1316 ATTGTGGTGTGAGATTTGCCAGTAAGCTGTTGGACATATATCTCTCCAGCAACA--CATG 1373
Query 1270 TAG-CT-ACTAGAATGAGTGCGGTGGCTTATCTTGCTAGCT-TCTTGGCTCGTGGAAAGT 1326
| | || ||||| |||||||| ||||||||||| ||||||| | ||| ||||||||||||
Sbjct 1374 TCGACTTACTAGGATGAGTGCAGTGGCTTATCTAGCTAGCTAT-TTGTCTCGTGGAAAGT 1432
Query 1327 TTTTGCCGGTTTCCTTTGTGGCTAGCATGTTGAAAAGGTTGATAGATGAGTGTGTGGGTT 1386
||||||| | ||| ||||||||||||||||||||||| ||| | || ||||||| || |
Sbjct 1433 TTTTGCCTGCTTCTTTTGTGGCTAGCATGTTGAAAAGATTGGTGGACGAGTGTGCGGAAT 1492
Query 1387 ACTGCAGAACTTGCAATGATGATATTAGGCCTGAAGCACATCAGATT-TTCT-TCTCCGG 1444
| ||| |||| |||||||||||| | | ||| ||||||||||| | | |||| | || ||
Sbjct 1493 ATTGCGGAACATGCAATGATGATGTGAAGCCAGAAGCACATCA-AGTGTTCTAT-TCTGG 1550
Query 1445 ATGTCAGGCAATCATGTATGTGCTCTGCTTCCGGATGAGGTCCATCCTGGATG-TTCCTC 1503
||||||||||||| |||||||||| |||||||| ||||| ||||| |||| | ||||||
Sbjct 1551 ATGTCAGGCAATCTTGTATGTGCTATGCTTCCGAATGAGATCCATAGTGGA-GATTCCTC 1609
Query 1504 GCCTTCGGTCCCAGCTTACACCATTGGAGTCAATTTTAA-TGCACAAGCTAAACCCATTG 1562
|| ||| || ||| ||| | ||||||||||||||||| | ||||| ||||||||| |
Sbjct 1610 GCTTTCAATCGCAGTTTAGATCATTGGAGTCAATTTTATCT-CACAAACTAAACCCACT- 1667
Query 1563 AG-GGTATGCCTTCCATCAGTAGTTGCGGAGTTCCTTAGACAAGCTAAAGCAGGTGGTCT 1621
| ||| || |||||||| |||||| | |||||||||| |||||| ||||| ||||||||
Sbjct 1668 ACTGGTGTGTCTTCCATCTGTAGTTTCCGAGTTCCTTAAACAAGCCAAAGCTGGTGGTCT 1727
Query 1622 GTTCATCGTCTCAGACTCGTTCATTTTCGATGACCTACTTGAGTCTGAGCTCTCCCGTGC 1681
|||||| |||||||| || ||||||||||||||||||| |||||||||||||| |||||
Sbjct 1728 GTTCATTGTCTCAGAATCCTTCATTTTCGATGACCTACACGAGTCTGAGCTCTCTCGTGC 1787
Query 1682 TTTTGGCGGGTGTGAGAGGCTTGATACGTTCTTCCCATTTGACCCTTGCTTGCTCAAAAC 1741
|||||| || | ||| |||||||| || |||||||| |||||||| |||||| | ||||
Sbjct 1788 TTTTGGTGGCTTTGAAAGGCTTGACACATTCTTCCCGTTTGACCCGTGCTTGTTGAAAAT 1847
Query 1742 CTCAAACAGCTTTATCTCCCGGAATTTCATCTACTGGTCAATGGTGAGTGCGACCTATG- 1800
|| | ||||| ||||||| ||| |||| || |||||||||||||| |||| ||||
Sbjct 1848 GTCTAGCAGCTACATCTCCCCGAACTTCAACTTCTGGTCAATGGTGAAAACGACTTATGG 1907
Query 1801 ATGAATATGAAGAAGATGATGATTATGATGCTGAGGTGATCGTGAACGGAGATG-AGGAC 1859
| ||| ||| || || || | || || || |||||| || ||||| ||||||| || ||
Sbjct 1908 A-GAAGATGGTGACGAAGA-GCTT-TG-TGATGAGGTCATAGTGAATGGAGATGCAG-AC 1962
Query 1860 AGTGACGAAGGG----GACGAGG-C-T-GATCTTGACTA-TGCCCTGAACAAAATGTCCA 1911
|||| || ||| ||||| | | | || ||||| || || |||||| ||||| |
Sbjct 1963 AGTG-CGGAGGAACCTGACGATGACGTTGAACTTGA-TAGTGAGATGAACACGATGTCTA 2020
Query 1912 TAACGCCTAAGCACTCTTTCAAGAACAAGATGGAAAGAGACAGACTCTT-AAGAATGCCT 1970
||| || || |||||||||| | | || | ||| ||| || ||||| |||| |||||
Sbjct 2021 CAACTCCGAAACACTCTTTCATG--C--GA-G-AAACAGAGAGGCTCTTGAAGA-TGCCT 2073
Query 1971 TCCAGAATCAGACCCTCCACTAGTCCT---GAATCCTT 2005
|| ||||||||||| |||||||||||| ||||||||
Sbjct 2074 TCAAGAATCAGACCATCCACTAGTCCTCCTGAATCCTT 2111
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 105822748860
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5