BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482446
Length=1302
Score E
Sequences producing significant alignments: (Bits) Value
AT2G34830.1 | Symbols: WRKY35, MEE24, AtWRKY35 | WRKY DNA-bindi... 1712 0.0
AT5G45050.1 | Symbols: TTR1, ATWRKY16, WRKY16 | Disease resista... 274 2e-72
> AT2G34830.1 | Symbols: WRKY35, MEE24, AtWRKY35 | WRKY DNA-binding
protein 35 | chr2:14693756-14696378 REVERSE LENGTH=1367
Length=1367
Score = 1712 bits (927), Expect = 0.0
Identities = 1106/1190 (93%), Gaps = 21/1190 (2%)
Strand=Plus/Plus
Query 1 ATGGACAACTTCCAAGGAGATCTAACAGACGTTGTACGAGGAATCGGATCAGGACACATG 60
|||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||| ||
Sbjct 1 ATGGACAACTTCCAAGGAGATCTAACAGACGTCGTACGAGGAATAGGATCAGGCCACGTG 60
Query 61 TCATCATCCCCTGGACCACCGGAAGGTCCATCTCCGAGCAGCTTGTCTCCGCCGCCAACA 120
||| |||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 61 TCACCATCTCCTGGACCACCGGAAGGTCCATCTCCGAGCAGCATGTCTCCGCCGCCAACA 120
Query 121 TCAGATCTCCACGTGGATTTCCCCTCCGCCGCTGCTTCTACCTA-CTGTCTAACAAATCC 179
||||||||||||||||| ||||||||||||||| ||||| || | |||||| |||||||
Sbjct 121 TCAGATCTCCACGTGGAATTCCCCTCCGCCGCTACTTCTGCC-AGCTGTCTCGCAAATCC 179
Query 180 CTTCGGAGACCCGTTCGTAAGCATGACA-GACCCTCTCATCCACCTCCCGGCCAACTCCG 238
|||||||||||||||||||||||||| | || ||||||||||||||||||||| |
Sbjct 180 CTTCGGAGACCCGTTCGTAAGCATGA-AGGATCCTCTCATCCACCTCCCGGCC-A----- 232
Query 239 GCTACTTATCCGGCGCCGGAGATAACAAAAGCAACAACAGTTTTGCAATCTTTCCAAAGG 298
||||| | ||||||||||| ||||| ||||||||||| |||||||||||||||||||||
Sbjct 233 GCTACATCTCCGGCGCCGGTGATAATAAAAGCAACAAAAGTTTTGCAATCTTTCCAAAGA 292
Query 299 TTTTTGAGGATGATCATATCAAGAGTCAATGCAGTGGCTTCCCAAGAATCAGGATCACGC 358
||||||||||||||||||| |||||||||||||||| |||||||||||| | |||| |||
Sbjct 293 TTTTTGAGGATGATCATATTAAGAGTCAATGCAGTGTCTTCCCAAGAATTAAGATCTCGC 352
Query 359 AAAGTAAC-ATCATCCACGATGCCTCCACGTGTAATTCTCCGGCCAT-A--GCCTCCGCC 414
|||||||| || ||||||||||||||||||||||||||||||||||| | | |||| |
Sbjct 353 AAAGTAACAAT-ATCCACGATGCCTCCACGTGTAATTCTCCGGCCATAACCGTCTCCTCT 411
Query 415 GCCGCCGCAGCAGCTTCGCCGTGGGGGATGATCAACGTTGATACCACTAACAATCCAAGA 474
||||||| |||||||||||||||||| |||||||||||| |||||||||||| |||||||
Sbjct 412 GCCGCCGTAGCAGCTTCGCCGTGGGGCATGATCAACGTTAATACCACTAACAGTCCAAGA 471
Query 475 AACTGTTTACTGGTCGATAATAATAACAACACGTCATCATCCTCACAGATTCAGATCTCT 534
||||||||||| |||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct 472 AACTGTTTACTTGTCGATAATAATAACAACACGTCATCATGCTCACAGGTTCAGATCTCT 531
Query 535 TCTTTCCCTCGGAATCTCGGGATAAAGAGAAGGAAGAGCCAGGCAAAGAAAGTGGTGTGC 594
|||| ||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 532 TCTTCCCCTCGGAATCTCGGAATTAAGAGAAGGAAGAGCCAGGCAAAGAAAGTGGTGTGC 591
Query 595 ATACCGGCTCCAGCCGCTATGAATAGCCGGTCCAGTGGAGAAGTTGTTCCGTCTGATCTA 654
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 592 ATACCGGCTCCAGCCGCTATGAACAGCCGGTCCAGTGGAGAAGTTGTTCCGTCTGATCTA 651
Query 655 TGGGCTTGGCGAAAGTACGGTCAAAAACCCATCAAAGGTTCTCCTTATCCAAGGGGTTAC 714
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 652 TGGGCTTGGCGAAAGTACGGTCAAAAACCTATCAAAGGTTCTCCTTATCCAAGGGGTTAC 711
Query 715 TACAGATGTAGCAGCTCAAAAGGTTGTTCAGCTAGGAAACAAGTCGAACGTAGCCGCACT 774
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 712 TACAGATGTAGCAGCTCAAAAGGTTGTTCAGCTAGGAAACAAGTCGAACGTAGCCGCACT 771
Query 775 GATCCAAACATGTTAGTCATTACTTACACCTCTGAGCATAACCATCCATGGCCTACTCAA 834
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 772 GATCCAAACATGTTAGTCATTACTTACACCTCTGAGCATAACCACCCATGGCCTACTCAA 831
Query 835 CGCAACGCTCTCGCCGGTTCCACTCGTtcctcctcctcctcctcctcTTTAAACCCTTCT 894
|||||||||||||| ||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 832 CGCAACGCTCTCGCAGGTTCCACTCGTTCCTC-T--TCCTCCTCCTCTTTAAACCCTTCT 888
Query 895 TCCAAATCCTCAACCGCAGCCGCCACTAGTACTTCTCCCTCATCCAGAGTTTCCCACGAC 954
|||||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||
Sbjct 889 TCCAAATCCTCAACCGCAGCCGCCACTA---CTTCTCCCTCATCCAGAGTTTTCCAAAAC 945
Query 955 AACAATACCAAAAACGAACCAAATAATTCCCACTTTCCTTCCTCTTCCACTCTTCCTCCT 1014
|||| | |||| ||||||| ||||| ||| |||| |||||||||||||||| |||||||
Sbjct 946 AACAGCAGCAAAGACGAACCCAATAACTCCAACTTGCCTTCCTCTTCCACTCATCCTCCT 1005
Query 1015 TATGTTGCCGCCGCAGTTAAGGAGGAGAACTTGGAAGAGCGTCAGGAAAATATGGAGTTC 1074
| || ||||||||| |||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 1006 TTTGACGCCGCCGCAATTAAGGAGGAGAACGTGGAAGAGCGTCAGGAAAAGATGGAGTTC 1065
Query 1075 GATTATAATGACGTTGAAGATACATATAGACCGGAGTTGTTGCGAGAGTTTCAACATCAG 1134
|||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||||
Sbjct 1066 GATTATAATGACGTTGAAAATACCTATAGACCGGAGTTGTTGCAAGAGTTTCAACATCAG 1125
Query 1135 CCGGAGGATTTCTTCGCCGATCTCGACGAGCTTGAGGGAGATTCTTTGAC 1184
|||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1126 CCGGAGGATTTCTTTGCCGATCTCGACGAGCTTGAGGGAGATTCTTTGAC 1175
Score = 158 bits (85), Expect = 2e-37
Identities = 107/118 (91%), Gaps = 0/118 (0%)
Strand=Plus/Plus
Query 1185 CAAAACGACGATTCCAGACGTTTTTAGTGATTTCTTTGACTCCTCCTCCTCCTCAAGGTC 1244
|||||||||||||||||||||||||||||||||||||||| | | |||||||||||
Sbjct 1218 CAAAACGACGATTCCAGACGTTTTTAGTGATTTCTTTGACGACGACGAGTCCTCAAGGTC 1277
Query 1245 GTTATAAACATTCTTGTTAATGTATACATAGATATAAAATTATTCATGTAATTCGTTT 1302
|||||||| ||| ||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 1278 GTTATAAATATTGTTGTTAATGTATACATAGAAATGAAATTATTCATGTAATTCGTTT 1335
> AT5G45050.1 | Symbols: TTR1, ATWRKY16, WRKY16 | Disease resistance
protein (TIR-NBS-LRR class) | chr5:18176914-18181805 REVERSE
LENGTH=4221
Length=4221
Score = 274 bits (148), Expect = 2e-72
Identities = 203/229 (89%), Gaps = 6/229 (3%)
Strand=Plus/Plus
Query 648 TGATCTATGGGCTTGGCGAAAGTACGGTCAAAAACCCATCAAAGGTTCTCCTTATCCAAG 707
||| ||||||| |||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 3540 TGACCTATGGGTTTGGCGAAAGTATGGTCAAAAACCCATCAAAAGTTCTCCTTATCCAAG 3599
Query 708 GGGTTACTACAGATGTAG-CAGCTCAAAAGGTTGTTCAGCTAGGAAACAAGTCGAACGTA 766
| ||||||| |||||| | |||||| |||||||||| ||||||||||||||||||||||
Sbjct 3600 GAGTTACTATAGATGT-GCCAGCTCGAAAGGTTGTTTTGCTAGGAAACAAGTCGAACGTA 3658
Query 767 GCCGCACTGATCCAAACATGTT--AGTCATTACTTACACCTCTGAGCATAACCATCCATG 824
|||||||||||||||| |||| ||| |||||||||| ||||||||||||||||||||
Sbjct 3659 GCCGCACTGATCCAAA--TGTTTCAGTAATTACTTACATCTCTGAGCATAACCATCCATT 3716
Query 825 GCCTACTCAACGCAACGCTCTCGCCGGTTCCACTCGTtcctcctcctcc 873
|| |||| |||||| |||| ||||| |||||||||||||| ||||||
Sbjct 3717 CCCCACTCTACGCAATACTCTTGCCGGCTCCACTCGTTCCTCTTCCTCC 3765
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64055895420
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5