BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482448
Length=816
Score E
Sequences producing significant alignments: (Bits) Value
AT2G34860.1 | Symbols: EDA3 | DnaJ/Hsp40 cysteine-rich domain s... 1086 0.0
> AT2G34860.1 | Symbols: EDA3 | DnaJ/Hsp40 cysteine-rich domain
superfamily protein | chr2:14708360-14710197 FORWARD LENGTH=852
Length=852
Score = 1086 bits (588), Expect = 0.0
Identities = 759/837 (91%), Gaps = 29/837 (3%)
Strand=Plus/Plus
Query 1 AAAAATGGCGGCATCATCATCTCATCTCTTCGCACTCCCTACGCCGGC--AT-CGTTTCT 57
|||||||||||||||||||||||||||||||||||||||| |||| || | || || |
Sbjct 17 AAAAATGGCGGCATCATCATCTCATCTCTTCGCACTCCCTTCGCCTGCTTCTCCG-TT-T 74
Query 58 CTTAGCTGCACCAAACAGGAATCGAGTTCGTGTTCTTGCGAAATCATGCCCGGACAATCA 117
| || ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 75 C-TATCTGCACCAAACCGGAATCGAGTTCGTGTTCTTGCGAAATCATGCCCGGAGAATCA 133
Query 118 GAGCTTCGATTCGAACGATTTGGATTCTTCTTCGGAGACTACCCACAAACCCCAGGGGGA 177
||||||||| || ||||||| ||||||||| || ||||||||||||||| ||||||| ||
Sbjct 134 GAGCTTCGACTCCAACGATTCGGATTCTTCCTCAGAGACTACCCACAAAGCCCAGGGAGA 193
Query 178 TCAGAAATCGGTGTCACGGAGACACTGGATGACGGCATGTGTGTGCGCATCCGCAGCTTT 237
||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 194 TCAGAAATCAGTGTCACGGAGACAGTGGATGACGGCATGTGTGTGCGCATCTGCAGCTTT 253
Query 238 AATTAACAATTCTTACACCTTTGTCTCTGTACAAAGCGCAGCCGCTTTAGACAAGAAACC 297
||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 254 AATTAGCAATTCTTATACCTTTGTCTCTGTACAAAGCGCAGCCGCTTTAGACAAGAAACC 313
Query 298 AGGAGGTTCATGTC-TCATGTTTAAGCGG-TTTTGTTATGATATAGGTGATATGTGTGGT 355
|||||||||||||| | | | || || | || || | | ||||||||||||||
Sbjct 314 AGGAGGTTCATGTCGT-AACTGCCAG-GGCAGTGGTGCTGTTCTTTGTGATATGTGTGGT 371
Query 356 GGTACAGGAAAATGGAAAGCTCTCAACCGAAAACGTGCCAAAGATGTATACGAGTTTACG 415
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 372 GGTACAGGAAAATGGAAAGCTCTCAACCGAAAACGTGCGAAAGATGTATATGAGTTTACG 431
Query 416 GAATGTCCAAACTGTTACGGTCGGGGTAAGCTTGTTTGTCCGGTCTGTTTGGGTACAGGT 475
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 432 GAATGTCCAAACTGTTACGGTCGAGGTAAGCTTGTTTGTCCGGTCTGTTTAGGTACAGGT 491
Query 476 TTACCAAACAACAAAGGCCTTCTTAGAAGGCCTGGTGCTCGTGAGCTACTCGAAAAGATG 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 492 TTACCAAACAACAAAGGCCTTCTTAGAAGGCCTGGTGCTCGTGAGCTACTCGAAAAGATG 551
Query 536 TACAATGGTCGGCTTCTTCCTGATTCATGAGAAGATTGTTACTGCAAATATGCTTTTAAG 595
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 552 TACAATGGTCGGCTTCTTCCTGATTCATGAGAAGATTGTTACTGCAAATATGATTTTAAG 611
Query 596 CACAGAGCCT-TAGACATGATGA-A-AA-C---T------T-ACACATTGAGGATGCCTG 641
||||||||| |||||||||||| | || | | | ||||||||||||||| ||
Sbjct 612 CACAGAGCCAGTAGACATGATGATAGAAGCGGATGAAAACTTACACATTGAGGATGCATG 671
Query 642 GATAGCTATATAGAAGAATGTAACGAATTCAACATGTTTTTGTAATGCTGCTAGGTTTGT 701
|| ||||||| |||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 672 GAAAGCTATA--GAAGAATGTATCGAATTCAACATGTTTTTATAATGCTGCTAGGTTTGT 729
Query 702 GTTGTAAATTCTATAAACCTAAAACTTTCCTTCTTCCCCATACAGAGTAGACGA-TCCA- 759
|||||||||||||||||| ||||||||||||||||||||||||||| ||||||| || |
Sbjct 730 GTTGTAAATTCTATAAACATAAAACTTTCCTTCTTCCCCATACAGACTAGACGAATC-AG 788
Query 760 TTTCGACGACGATACACACTCAGTCACTTATGCATTTAGGCATATAGAATCACACAC 816
||||||| | ||||| |||||| |||| |||||||||||||||||||||||||||||
Sbjct 789 TTTCGACTAAGATACTCACTCACTCACCTATGCATTTAGGCATATAGAATCACACAC 845
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39735210277
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5