BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482450
Length=530
Score E
Sequences producing significant alignments: (Bits) Value
AT2G34870.1 | Symbols: MEE26 | hydroxyproline-rich glycoprotein... 761 0.0
> AT2G34870.1 | Symbols: MEE26 | hydroxyproline-rich glycoprotein
family protein | chr2:14710777-14711453 FORWARD LENGTH=677
Length=677
Score = 761 bits (412), Expect = 0.0
Identities = 478/509 (94%), Gaps = 7/509 (1%)
Strand=Plus/Plus
Query 1 CAAAAGCATATAAGCaaaaaa-aC-AAACAAACTATGGCTTCTTCATCAGTCACCACTGT 58
||||||||||||||||||||| || ||||||| |||||||||||||||| ||| || |||
Sbjct 9 CAAAAGCATATAAGCAAAAAATACAAAACAAATTATGGCTTCTTCATCACTCATCAGTGT 68
Query 59 AGCCCTAACCCTAATCTTGATCTTCCACCTCACGCCGGAAACAACCGTAGCTCGTCGTCT 118
|||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 69 AGCCCTAACCCTAATCTTGATCTTCCACCTCATGCCGGAAACAACCGTCGCTCGTCGTCT 128
Query 119 CAAC-GATCAGAAGCCGAGTGATGAAGTAGTCACCACCACTACTGACGAAGCTAACAACC 177
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 129 -TACTGATCAGAAGCCGAGTGATGAAGTAGTCACCACCACTACCGACGAAGCTAACAACC 187
Query 178 TGCCGTTTCCACCGGGCTTGCCATTTGGCGGTGTTCCTCCGTTACCGTCACTATTTCCGC 237
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 188 TACCGTTTCCACCGGGCTTGCCATTTGGCGGTGTTCCTCCGTTACCGTCACTTTTTCCGC 247
Query 238 CGTTTGTACCTTCTCCGTTCCCTGGAAATATCCCACGTTTACCATTTCCGTTTCCGTTTC 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 248 CGTTTGTACCTTCTCCGTTCCCTGGAAATATCCCACGTTTACCATTTCCGTTTCCGTTTC 307
Query 298 CGACATCACCTCCGGCGCCATCTCTTCCTGGGCTCCCTGGCTTTACGTTTCCTCCCCTGC 357
|||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 308 CGACATCACCTCCGGCGCCATCCCTTCCTGGTTTCCCTGGCTTTACGTTTCCTCCCCTGC 367
Query 358 CGTTCCTCACGCCGCCACCTCTGTGAACGTATAGGTTAAG-GCCGTTATAATATTAGTTA 416
| |||||||| |||||||||||||||||||||| |||| | ||||||||||| |||||||
Sbjct 368 CATTCCTCACACCGCCACCTCTGTGAACGTATACGTTA-GCGCCGTTATAATGTTAGTTA 426
Query 417 TCCTTGTTGGAATAATCTCACGGTAATATCGATAATGATCATGTGTACTCGATGATATAA 476
||| ||||||||||||||| |||||| |||||||| |||||||||||||||||||||||
Sbjct 427 TCCC-GTTGGAATAATCTCATGGTAATTTCGATAATCATCATGTGTACTCGATGATATAA 485
Query 477 GACTAGTTTTTTATGAAAATTTTAATAAA 505
||| |||||| |||||||||||||||||
Sbjct 486 TACTGGTTTTTAATGAAAATTTTAATAAA 514
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25368244235
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5