BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482453
Length=1514
Score E
Sequences producing significant alignments: (Bits) Value
AT2G34900.1 | Symbols: GTE01, IMB1, GTE1 | Transcription factor... 2370 0.0
> AT2G34900.1 | Symbols: GTE01, IMB1, GTE1 | Transcription factor
GTE6 | chr2:14723013-14725650 REVERSE LENGTH=1569
Length=1569
Score = 2370 bits (1283), Expect = 0.0
Identities = 1452/1531 (95%), Gaps = 22/1531 (1%)
Strand=Plus/Plus
Query 1 AGCTGGTATCTCTTCCGTCTTCTTCCTCCGACCTGTGTCTTTCTTCTGAAT-CTTCG-AA 58
||||| | |||||||||||||| ||||||||||| ||||||||||||| || ||||| ||
Sbjct 1 AGCTGCTGTCTCTTCCGTCTTCGTCCTCCGACCTCTGTCTTTCTTCTG-ATCCTTCGAAA 59
Query 59 AAGCTCTCGTGAGTCACTACTCTTCTCTAATGTCTGTACATGTCAAGGAAGAACCTGTGC 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 AAGCTCTCGTGAGTCACTACTCTTCTCTAATGTCTGTACATGTCAAGGAAGAACCTGTGC 119
Query 119 TTGTGCCAAACTGCGATGTCGAAAATACAGAGCTTGCAGTTTTTTATGGAAATGGAGAAA 178
|||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 120 TTGTTCCAAACTGCGATGTCGAGAATACAGAGCTTGCAGTTTTCAATGGAAATGGAGAAA 179
Query 179 GTGAGCTTGAGGATTTCGGAACCTGCGTAGATGAGATAACTGATAGAGTGAATCAGCTTG 238
||||||||||| |||| || || ||||||||||||||||| |||||||||||||||||||
Sbjct 180 GTGAGCTTGAGAATTTTGGGACTTGCGTAGATGAGATAACAGATAGAGTGAATCAGCTTG 239
Query 239 AGCAAAAAGTTGTGGAGGTTGAGCACTTTTACTCTTCAAAAGATGGAGCAGCTCAAACTA 298
||||||||||||||||||| || |||||||||||| ||||||||||||| ||||||||||
Sbjct 240 AGCAAAAAGTTGTGGAGGTCGAACACTTTTACTCTACAAAAGATGGAGCTGCTCAAACTA 299
Query 299 ATACTTCTAAGAGTAACTCGGGTGGAAAAAAGGTCGCTATTTCTCAACCAAACAACTCGA 358
| |||||||||||||||||||| || || ||| |||||||||||||||||||||||||||
Sbjct 300 ACACTTCTAAGAGTAACTCGGGCGGGAAGAAGATCGCTATTTCTCAACCAAACAACTCGA 359
Query 359 AGTGTAACTCGGCCGGGAAAGAAAAATCAAAGGGAAAACATGTTTCCAGCCCTGACCTTA 418
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 AGGGTAACTCGGCCGGGAAAGAAAAATCAAAGGGAAAACATGTTTCCAGCCCTGACCTTA 419
Query 419 TGCGTCAATTTGCAACAATGTTTCGTCAGATTGCTCAACATAAATGGGCATGGCCGTTCT 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TGCGTCAATTTGCAACAATGTTTCGTCAGATTGCTCAACATAAATGGGCATGGCCGTTCT 479
Query 479 TGGAGCCTGTTGATGTTAAAGGACTTGGACTTCATGATTATTACAAGGTTATAGAGAAGC 538
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 480 TGGAGCCTGTTGATGTTAAAGGACTTGGACTACATGATTATTACAAGGTTATAGAGAAGC 539
Query 539 CAATGGACTTGGGAACAATTaaaaaaaaaaTGGAGAGTTCGGAGTATAGCAATGTCCGGG 598
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 540 CAATGGACTTGGGAACAATTAAAAAAAAAATGGAGAGTTCGGAGTATAGCAATGTCAGGG 599
Query 599 AGATATATGCTGATGTAAGACTAGTTTTCAAGAACGCGATGAGATACAATGAAGAAAAAG 658
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 AGATATATGCCGATGTTAGACTAGTTTTCAAGAACGCGATGAGATACAATGAAGAAAAAG 659
Query 659 AAGATGTTTATGTGATGGCTGAATCTCTTCTGGAGAAATTTGAGGAGAAATGGCTCCTGA 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 AAGATGTTTATGTGATGGCTGAATCTCTTCTGGAGAAATTTGAGGAGAAATGGCTCCTGA 719
Query 719 TAATGCCTAAACTTGTTGAAGAGGAAAAGAAACAGGCAGACGAAGAAGCCGAGAAGCATG 778
|||||||||||||||| || |||||||||||||| | |||||||||||| ||||||||||
Sbjct 720 TAATGCCTAAACTTGTGGAGGAGGAAAAGAAACAAGTAGACGAAGAAGCGGAGAAGCATG 779
Query 779 CAAATAAGCAGCTTACTCTGGAGGCTGCACAAGCGGAAATGGCTAGGGATTTAAGCAACG 838
| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 CCAATAAGCAGCTTACAATGGAGGCTGCACAAGCGGAAATGGCTAGGGATTTAAGCAACG 839
Query 839 AACTATATGAGATCGATCTGCAGCTGGAGAGACTCCGGGAATCAGTAGTTCAGAGATGCA 898
||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 840 AACTATATGAGATTGATCTGCAGCTGGAGAAACTCCGGGAATCAGTAGTTCAGAGATGCA 899
Query 899 GAAAACTGTCTACTCAAGAAAAGAAAGGACTTTCTGCAGCTCTAGGCCGTCTCTCACCTG 958
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 900 GAAAACTGTCCACTCAAGAAAAGAAAGGACTTTCTGCAGCTCTAGGTCGTCTCTCACCTG 959
Query 959 AGGATCTGTCTAAGGCGTTAAAAATGGTTTCAGAGAGCAACCCGAGTTTCCCGGCTGGAG 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 AGGATCTGTCTAAGGCGTTAAAAATGGTTTCAGAGAGCAACCCGAGTTTCCCGGCTGGAG 1019
Query 1019 CACCAGAAGTCGAGCTTGACATCGATGTTCAGACTGATGTTACATTGTGGAGACTGAAGG 1078
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 1020 CACCAGAAGTCGAGCTTGACATTGATGTTCAGACTGACGTTACATTGTGGAGACTGAAGG 1079
Query 1079 TGTTTGTGCAAGAAGCATTGAAAGCAGCTAACAAAAGCTCTGGAGGAACAAACGCTCAGA 1138
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1080 TGTTTGTGCAAGAAGCATTGAAAGCAGCTAACAAAAGCTCTGGAGGAACAAACGCTCAAA 1139
Query 1139 ACAATAACAATACCGGAACTGGAGAGATCAACAAGAACAATGCGAAAAGACGGAGAGAGA 1198
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1140 ACAATAACAATACTGGAACTGGAGAGATCAACAAGAACAATGCAAAAAGACGGAGAGAGA 1199
Query 1199 TCTCTGATGCAATCAATAAAGCTTCAATTAAAAGAGCTAAGAAGGCTTGAATCTTtctct 1258
||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 1200 TCTCTGATGCAATCAATAAAGCTTCAATTAAAAGAGCTAAGAAAGCTTGAATCTCTCTCT 1259
Query 1259 ctctctctc-tGTGTTTATTGAT-CAACAAGGAACAAGAGTTTGGTGAACACCAATCTAA 1316
||||| | ||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1260 ATCTCT-TGATGTGTTTATTGATACAG-AAGGAACAAGAGTTTGGTGAACACCAATCTAA 1317
Query 1317 ATTAGAAACTTTCCAGTTCCATTGCGCATGTTGCTTCAAATGTTG-GCACTATGTAAAAA 1375
||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 1318 ATTAGAAACTTTCCAGTTCCATTGCGCATGTTGCTTCAAATGTTGAGCACAATGTAAAAA 1377
Query 1376 AGAATGAATGTGaaaaaaaTCTGAGCTAGAGAGGAGATATATAAAAAGACTGCTTG-G-- 1432
|||||||||| ||||||||||||||||| |||||||||||| || ||||||||||| |
Sbjct 1378 AGAATGAATGGGAAAAAAATCTGAGCTATAGAGGAGATATA-AAGAAGACTGCTTGAGGG 1436
Query 1433 AGCA-----GA-AA-TCT---AATAAGATCTTCAGTTTGAGAGATCTTTGGTTTGTTGAA 1482
|| | || || ||| ||||| ||||||||||||||||||||||||| |||||||
Sbjct 1437 AGAAATTCTGACAAATCTTCTAATAAAATCTTCAGTTTGAGAGATCTTTGGTGTGTTGAA 1496
Query 1483 CGTTTCTTCGCTTTCATTACCTTAAACCTCG 1513
|||||||||| ||||||||||||||||||||
Sbjct 1497 CGTTTCTTCGATTTCATTACCTTAAACCTCG 1527
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74698410960
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5