BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg482456 Length=2571 Score E Sequences producing significant alignments: (Bits) Value AT2G34920.1 | Symbols: EDA18 | RING/U-box superfamily protein |... 3644 0.0 AT2G34910.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 102 2e-20 > AT2G34920.1 | Symbols: EDA18 | RING/U-box superfamily protein | chr2:14728027-14731156 REVERSE LENGTH=2647 Length=2647 Score = 3644 bits (1973), Expect = 0.0 Identities = 2407/2611 (92%), Gaps = 51/2611 (2%) Strand=Plus/Plus Query 1 TTTCTTTTACTActctctctctctGTAAGAAACCCTTCTAAAAATAGATAAAACAAAACA 60 ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 18 TTTCTTTTACTGGTCTCTCTCTCTATAAGAAACCCTTCTAAAAATAGATAAAACAAAACA 77 Query 61 CTGTTGCACTTGAAATTCTGTTTCTTCATGGTTACCTTGTCCTTCGAGTCTAACACCACT 120 ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| Sbjct 78 CTGTTGCACTTGAAATTCTGTTTCTTCATGGTTACCTGGTCTTTCGAGTCTAACACCACT 137 Query 121 CGTCGTTACTCTGTTTTTAGCTGAAACAAACGAGAAAATTTAGTGTCTTCAGTAATCAAA 180 ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| Sbjct 138 CGTCGTTACTCTGTTTTTAGCTGAAAC-AACGAGAAATTTTAGTGTCTTCAGTAATCAAA 196 Query 181 AACCAAC-T-T-TTTCTTTTTC-TTTCCCTTTGAAGAGAGAAAGGTTTTGA--TC-ATTT 233 ||||||| | | ||| |||||| ||| | |||||||||||||||||||||| || |||| Sbjct 197 AACCAACTTCTCTTTTTTTTTCTTTTTCATTTGAAGAGAGAAAGGTTTTGATTTCTATTT 256 Query 234 C----C--------TAAGATCCAAATCAAAGATGGGGCTTTGTGTTTGTGATCGTTGACA 281 | | |||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 257 CATTTCATAAGAATTAAGATCCAAATCAAAGATGGGTCTTTGTGTTTGTGATCGTTGACA 316 Query 282 AATAGGTCAATTGGCTTAAAGAAAATGGCCTCGTTACGACCTAGCTTCGGATCCATCCTT 341 |||||||||||| |||||| |||||||||||||||||||||||| || ||||| | ||| Sbjct 317 AATAGGTCAATTAGCTTAAGGAAAATGGCCTCGTTACGACCTAGTTTTGGATCTGTTCTT 376 Query 342 AGAGATCGCAACCAACGGCACAATGACGACGTTGTTTTC------AA---GAAAGCTCAA 392 ||||||||||||||||||||||||||||| ||||||||| || |||||||||| Sbjct 377 AGAGATCGCAACCAACGGCACAATGACGATGTTGTTTTCAAGAAGAATCTGAAAGCTCAA 436 Query 393 GTGAAAACTGCTCCTCCTGCGATCTCCGACGAGAGTTCTCAAAACAGAGTTGATTCTTTG 452 ||||||||||||||||| || |||||||||||||| || | |||||||||||||||||| Sbjct 437 GTGAAAACTGCTCCTCCGGCCATCTCCGACGAGAGCTCGGAGAACAGAGTTGATTCTTTG 496 Query 453 ATCGGAAACAAGCGGAAAAAGAACAACAAAAGCCGTCTTGGATCGCCGGAGAAACCACGT 512 |||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| Sbjct 497 ATCGGAAACAAGCGGAAAAAGAACAATAAAAGCCGTCCTGGATCGCCGGAGAAACCACGG 556 Query 513 ACCAGAAAAGTG-AACAACTTTTCCGACAATGTTGGAGGAGCTTCTTCTCTTGTGCAGAT 571 || ||||||| | |||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 557 ACTAGAAAAG-GAAACAACTTTTCCGACAATCTTGGAGGAGCTTCTTCTCTTGTGCAGAT 615 Query 572 ATGGGAGGCGAGGCTTAATCGATCCAACGGCGGAAACTCGCCGATCCATGGCCAATCTAT 631 ||||||||||||||| |||||||||||||||||||||||| | |||||| ||||||| || Sbjct 616 ATGGGAGGCGAGGCTAAATCGATCCAACGGCGGAAACTCGGCTATCCATAGCCAATCAAT 675 Query 632 AGAGATCAGCTCAGAAGCGAGCGTTCAAGAAATCCACATTTTGGCTCCATCCATCGAGGG 691 ||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||| || Sbjct 676 AGAGATCAGCTCAGAAGCGAGCGTTCAAGAAATACACCTTTTAGCTCCATCCATCGACGG 735 Query 692 AGAATCTGAATCAGAGAACGAATCAAAGAGTCCTGATCTGACGGTGGAGATTGAATCTGA 751 |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| Sbjct 736 AGAATCTGAATCAGAGAACGAATCCAAGAGTCCTGATCAGACGGTGGAGATTGAATCTGG 795 Query 752 GACACTCAATTCGGTTTCTGATATTATCCAGAGATTGAGTAACGAACAGAAGCTAACCGC 811 ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 796 GACTCTCAATTCGGTTTCTGATATTATCCGGAGATTGAGTAACGAACAGAAGCTAACCGC 855 Query 812 CAGCAATAATGGCGGTGCCGCCGACATACCGATCGTTAAAACGCCCACGCAGGAGAAAAG 871 |||||||||||||||||| | ||| || ||||||||||||||||| |||| ||||||||| Sbjct 856 CAGCAATAATGGCGGTGCAGTCGATATGCCGATCGTTAAAACGCCGACGCTGGAGAAAAG 915 Query 872 CAGTTTTCCGGTAGTTACTTGTTCGCCGCG-ATTCCGAGGACGGCAAGCTTACTCCGATC 930 |||||||| ||| |||||||| || ||||| ||| |||||| |||||||||||||||||| Sbjct 916 CAGTTTTCAGGTGGTTACTTGCTCTCCGCGAATT-CGAGGAAGGCAAGCTTACTCCGATC 974 Query 931 TGCTTGTGCATTTGGAACGAGAACGTCACCGCGAATTGGAATTGCTTCTTGGACGCAACG 990 ||||||||||| ||||||| |||||||||||||||||||||| |||||||||||||||| Sbjct 975 TGCTTGTGCATCTGGAACGCGAACGTCACCGCGAATTGGAATCACTTCTTGGACGCAACG 1034 Query 991 CAGTTTCTAGGTTTCCTCAACGTGGTCGCCTCCAGTCAATGTTGCGGCTAAGGAGTCTCA 1050 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1035 CAGTTTCTAGGTTTCCTCAACGTGGTCGCCTCCAGTCAATGTTGCGGCTAAGGAGTCTCA 1094 Query 1051 AACGCGGCCTAGCGATTCAAGATCGTCATCGTGGTACCACGAAAGGCGATTCAAATCGCT 1110 |||||||||||||||||||||||||||||||||||||||| ||| |||||| ||||||| Sbjct 1095 AACGCGGCCTAGCGATTCAAGATCGTCATCGTGGTACCACAAAAAGCGATTTGAATCGCT 1154 Query 1111 TCCAACCTAGTTCTACAATTCTTCATCTAAGCGAAAAATTCCGGGAAAACGCAGCAAACA 1170 |||||||||||||||||||||| |||||||| |||||| |||||||||| ||||||||| Sbjct 1155 TCCAACCTAGTTCTACAATTCTCCATCTAAGAGAAAAACTCCGGGAAAAAGCAGCAAACG 1214 Query 1171 CTGACGCTGAAGCCAAACAAAAGAAGGGCCAACAATACACCGTAGAAACAGAGAGCATGG 1230 ||| |||||||||| || ||||||||| ||||||| |||||||||||||||||||||| Sbjct 1215 CTGCCGCTGAAGCCGGACTAAAGAAGGGTCAACAATCCACCGTAGAAACAGAGAGCATGC 1274 Query 1231 GGTCAAAAGAAATGACTTTTACTATTGATACGCCTTCCACAGAGCGATTAAGCCCTCAAA 1290 ||||||||||| | | || | || || | ||||| |||||||| ||||| ||||||| Sbjct 1275 AGTCAAAAGAAACCAGTGGTATTCTTCATTCTCCTTCTACAGAGCGGTTAAGTCCTCAAA 1334 Query 1291 ACCGTAACATAGAGGAAGCAATCTTACGCAAGAACGAAAC--AAA--AA--TGAATTACC 1344 | || ||||||||||||||||||||||||||||||||||| ||| || ||| ||||| Sbjct 1335 AACGCAACATAGAGGAAGCAATCTTACGCAAGAACGAAACTGAAACCAAAATGAGTTACC 1394 Query 1345 TTCAGCTGAACAAAGCCATAGTAGCAGAAGTTTTGAAAAGAAAATCTGATAACACTAGCC 1404 |||||||||| |||||||||||||||||||| ||| ||||| |||||||||||||||| | Sbjct 1395 TTCAGCTGAAAAAAGCCATAGTAGCAGAAGTATTGGAAAGAGAATCTGATAACACTAGTC 1454 Query 1405 CTATCACCAGCGTAACTCATCAAGAACCGCGGATACTAGGGAAGGAGCAAGCGAACAAAG 1464 || ||||||||||||||| ||||||||||||||||||| |||| ||| ||||| ||| Sbjct 1455 CTCTCACCAGCGTAACTCCTCAAGAACCGCGGATACTAAGGAACGAGGAAGCGGGGAAAC 1514 Query 1465 TAGAAAGCAGTAC-GCAGAGAACTCAAGAGACACCGTTCCTTGAGACACAAGAAACGTCA 1523 |||||||| |||| | || |||||||||||||||||||||||||||||||||||| |||| Sbjct 1515 TAGAAAGCGGTACAG-AGGGAACTCAAGAGACACCGTTCCTTGAGACACAAGAAATGTCA 1573 Query 1524 TTCCAAAGCGGATGGGAAGAGCAAGAAGAGTATGAGGATGAGCAGTCTTATTACGGAGAC 1583 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1574 TTCCAAAGCGGATGGGAAGAGCAAGAAGAGTATGAGGATGAGCAGTCTTATTACGGAGAC 1633 Query 1584 ATGAGCTACGATTGGTTTACAGAAATATCTCGGCCTCGGACTTACTGGGAAGATCTGAGG 1643 |||||||| || |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 1634 ATGAGCTATGACTGGTTTACAGAAATATCTAGGCCTCGGACTTATTGGGAAGATCTGAGG 1693 Query 1644 AAATCTCGGTATCTGGAAGTGATGAACACTAAATCTGACAAGGGCGATATATGCAGACTT 1703 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1694 AAATCTCGGTATCTGGAAGTGATGAACACTAAATCTGACAAGGACGATATATGCAGACTT 1753 Query 1704 CTTGAGAGAAGAACCGTTTCGGATTTCCTCCAAAGCGGATTACGAGAGAAGATCGATAAG 1763 |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1754 CTTGAGAGAAGAACGGTTTCGGGTTTCCTCCAAAGCGGATTACGAGAGAAGATCGATAAG 1813 Query 1764 CTCATAATGGCCCGTGTTCAGATACATCCGGCTCACCGTATTCCACAAGCATGTAAAGAA 1823 ||||||||| |||||||||||||||||||||||||||| ||| | ||||| |||||| Sbjct 1814 CTCATAATGTCCCGTGTTCAGATACATCCGGCTCACCGGATTGAAGAAGCAACTAAAGAG 1873 Query 1824 GAAGAGAAATGTGACATAGGCGAAGAAAAAGATGAAGACAGAGATGACTTGAGCCAATCA 1883 |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1874 GAAGAGAAATATGACATAGGAGAAGAAAAAGATGAAGACAGAGATGACTTGAGCCAATCA 1933 Query 1884 TCATCACAAATATTTGCACCGTCTCCGGCAGGATCATGGAGTTCTCAGGACACAGGAGTT 1943 |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1934 TCATCACAGATATTTGCACCGTCTCCGGCAGGATCATGGAGTTCTCTGGACACAGGAGTT 1993 Query 1944 ACTTCCACACCAACGCACAATCTTCATTCCAATCTCCAACTAGAAATGTCTGAGCTACGA 2003 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1994 ACTTCCACACCAACGCACAATCTTCATTCCACTCTCCAACTAGAAATGTCTGAGCTACGA 2053 Query 2004 GACTCTGTCAAAACGTGTTTGGACGTAAACGCTAGCCTTCAAAAGTCGGTTCAGCGGGAA 2063 |||||||||||||||||||||||||| || ||||||||||||||||||||||| | |||| Sbjct 2054 GACTCTGTCAAAACGTGTTTGGACGTCAATGCTAGCCTTCAAAAGTCGGTTCACCTGGAA 2113 Query 2064 AACCCCTTGAAACGCAAATGCTGCGTTTGTAACGAAACGCAAGTTGAAACACTTTTATAC 2123 || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2114 AATCCCTTTAAACGCAAATGCTGCGTTTGTAACGAAACGCAAGTTGAAACACTTTTATAC 2173 Query 2124 AGGTGCGGGCACATGTGTACATGCCTGAGATGCGCAAACGAACTACAATATAATGGCGGG 2183 ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 2174 AGGTGTGGGCACATGTGCACATGCCTGAGATGCGCAAACGAACTACAATATAATGGCGGG 2233 Query 2184 AAATGCCCGATTTGTCATGCCAAGATTCTAGACGTTGTTCGCGTTTTCGTCGATTCAAGA 2243 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2234 AAATGCCCGATTTGTCATGCCAAGATTCTAGACGTTGTTCGCGTTTTCGTCGATTCAAGA 2293 Query 2244 ACCTGAAATTAATAATACAAAGGGTTCAAAACGCTAACAATACTTCACTTTATCTATAAC 2303 |||||||||| |||| || ||||||||||||||||||||||||||||||||||||||||| Sbjct 2294 ACCTGAAATTCATAAAACCAAGGGTTCAAAACGCTAACAATACTTCACTTTATCTATAAC 2353 Query 2304 ACGTTTTCTTTTTTCAGTTCCTCTGTTTGCTTTCAAGTCTGACTGG--CGCGTTTGCGTT 2361 | ||||| |||| | ||||||||||||||||||||| ||||||| |||||||||||| Sbjct 2354 ATGTTTT-TTTT---A-TTCCTCTGTTTGCTTTCAAGTTTGACTGGAGCGCGTTTGCGTT 2408 Query 2362 TTGGATCTGCGTCCGAGATTCATATCTATGCTTTTTATAGGTGAATCACTAACCAAATCT 2421 |||||||||||||| ||||||||| ||||| ||||||||||||||||||||||| ||||| Sbjct 2409 TTGGATCTGCGTCCAAGATTCATACCTATGGTTTTTATAGGTGAATCACTAACCCAATCT 2468 Query 2422 ATTTTCTTGACGTTGAAGTTTGCGTCTTGTAAAGATACTCTACATATGCCTCCTTTCACT 2481 ||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||||||| Sbjct 2469 ATTTTCTTGACGTTGAAGTTTTCGTCTTGTAAAAATACTCTACACATGCCTCCTTTCACT 2528 Query 2482 TTCCTT-CCATCAAATTGGAATAGGATTTGTAGAATGTACGAGGTTTAGTATTTACCGTT 2540 |||||| ||||||| |||||| |||||||||||||||||||||||||||||||||||| | Sbjct 2529 TTCCTTTCCATCAATTTGGAACAGGATTTGTAGAATGTACGAGGTTTAGTATTTACCGAT 2588 Query 2541 TATTCTATATGTTT-TTGTGTGTACCAATCT 2570 |||||||||| | | |||| ||||||||||| Sbjct 2589 TATTCTATAT-TCTGTTGTATGTACCAATCT 2618 > AT2G34910.1 | Symbols: | BEST Arabidopsis thaliana protein match is: root hair specific 4 (TAIR:AT1G30850.1); Has 43 Blast hits to 43 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:14726800-14728128 FORWARD LENGTH=1329 Length=1329 Score = 102 bits (55), Expect = 2e-20 Identities = 68/74 (92%), Gaps = 2/74 (3%) Strand=Plus/Minus Query 2498 GGAATAGGATTTGTAGAATGTACGAGGTTTAGTATTTACCGTTTATTCTATATGTTT-TT 2556 |||| |||||||||||||||||||||||||||||||||||| ||||||||||| | | || Sbjct 1329 GGAACAGGATTTGTAGAATGTACGAGGTTTAGTATTTACCGATTATTCTATAT-TCTGTT 1271 Query 2557 GTGTGTACCAATCT 2570 || ||||||||||| Sbjct 1270 GTATGTACCAATCT 1257 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 127624702992 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5