BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482456
Length=2571
Score E
Sequences producing significant alignments: (Bits) Value
AT2G34920.1 | Symbols: EDA18 | RING/U-box superfamily protein |... 3644 0.0
AT2G34910.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 102 2e-20
> AT2G34920.1 | Symbols: EDA18 | RING/U-box superfamily protein
| chr2:14728027-14731156 REVERSE LENGTH=2647
Length=2647
Score = 3644 bits (1973), Expect = 0.0
Identities = 2407/2611 (92%), Gaps = 51/2611 (2%)
Strand=Plus/Plus
Query 1 TTTCTTTTACTActctctctctctGTAAGAAACCCTTCTAAAAATAGATAAAACAAAACA 60
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 18 TTTCTTTTACTGGTCTCTCTCTCTATAAGAAACCCTTCTAAAAATAGATAAAACAAAACA 77
Query 61 CTGTTGCACTTGAAATTCTGTTTCTTCATGGTTACCTTGTCCTTCGAGTCTAACACCACT 120
||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 78 CTGTTGCACTTGAAATTCTGTTTCTTCATGGTTACCTGGTCTTTCGAGTCTAACACCACT 137
Query 121 CGTCGTTACTCTGTTTTTAGCTGAAACAAACGAGAAAATTTAGTGTCTTCAGTAATCAAA 180
||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 138 CGTCGTTACTCTGTTTTTAGCTGAAAC-AACGAGAAATTTTAGTGTCTTCAGTAATCAAA 196
Query 181 AACCAAC-T-T-TTTCTTTTTC-TTTCCCTTTGAAGAGAGAAAGGTTTTGA--TC-ATTT 233
||||||| | | ||| |||||| ||| | |||||||||||||||||||||| || ||||
Sbjct 197 AACCAACTTCTCTTTTTTTTTCTTTTTCATTTGAAGAGAGAAAGGTTTTGATTTCTATTT 256
Query 234 C----C--------TAAGATCCAAATCAAAGATGGGGCTTTGTGTTTGTGATCGTTGACA 281
| | |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 257 CATTTCATAAGAATTAAGATCCAAATCAAAGATGGGTCTTTGTGTTTGTGATCGTTGACA 316
Query 282 AATAGGTCAATTGGCTTAAAGAAAATGGCCTCGTTACGACCTAGCTTCGGATCCATCCTT 341
|||||||||||| |||||| |||||||||||||||||||||||| || ||||| | |||
Sbjct 317 AATAGGTCAATTAGCTTAAGGAAAATGGCCTCGTTACGACCTAGTTTTGGATCTGTTCTT 376
Query 342 AGAGATCGCAACCAACGGCACAATGACGACGTTGTTTTC------AA---GAAAGCTCAA 392
||||||||||||||||||||||||||||| ||||||||| || ||||||||||
Sbjct 377 AGAGATCGCAACCAACGGCACAATGACGATGTTGTTTTCAAGAAGAATCTGAAAGCTCAA 436
Query 393 GTGAAAACTGCTCCTCCTGCGATCTCCGACGAGAGTTCTCAAAACAGAGTTGATTCTTTG 452
||||||||||||||||| || |||||||||||||| || | ||||||||||||||||||
Sbjct 437 GTGAAAACTGCTCCTCCGGCCATCTCCGACGAGAGCTCGGAGAACAGAGTTGATTCTTTG 496
Query 453 ATCGGAAACAAGCGGAAAAAGAACAACAAAAGCCGTCTTGGATCGCCGGAGAAACCACGT 512
|||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 497 ATCGGAAACAAGCGGAAAAAGAACAATAAAAGCCGTCCTGGATCGCCGGAGAAACCACGG 556
Query 513 ACCAGAAAAGTG-AACAACTTTTCCGACAATGTTGGAGGAGCTTCTTCTCTTGTGCAGAT 571
|| ||||||| | |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 557 ACTAGAAAAG-GAAACAACTTTTCCGACAATCTTGGAGGAGCTTCTTCTCTTGTGCAGAT 615
Query 572 ATGGGAGGCGAGGCTTAATCGATCCAACGGCGGAAACTCGCCGATCCATGGCCAATCTAT 631
||||||||||||||| |||||||||||||||||||||||| | |||||| ||||||| ||
Sbjct 616 ATGGGAGGCGAGGCTAAATCGATCCAACGGCGGAAACTCGGCTATCCATAGCCAATCAAT 675
Query 632 AGAGATCAGCTCAGAAGCGAGCGTTCAAGAAATCCACATTTTGGCTCCATCCATCGAGGG 691
||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||| ||
Sbjct 676 AGAGATCAGCTCAGAAGCGAGCGTTCAAGAAATACACCTTTTAGCTCCATCCATCGACGG 735
Query 692 AGAATCTGAATCAGAGAACGAATCAAAGAGTCCTGATCTGACGGTGGAGATTGAATCTGA 751
|||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 736 AGAATCTGAATCAGAGAACGAATCCAAGAGTCCTGATCAGACGGTGGAGATTGAATCTGG 795
Query 752 GACACTCAATTCGGTTTCTGATATTATCCAGAGATTGAGTAACGAACAGAAGCTAACCGC 811
||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 796 GACTCTCAATTCGGTTTCTGATATTATCCGGAGATTGAGTAACGAACAGAAGCTAACCGC 855
Query 812 CAGCAATAATGGCGGTGCCGCCGACATACCGATCGTTAAAACGCCCACGCAGGAGAAAAG 871
|||||||||||||||||| | ||| || ||||||||||||||||| |||| |||||||||
Sbjct 856 CAGCAATAATGGCGGTGCAGTCGATATGCCGATCGTTAAAACGCCGACGCTGGAGAAAAG 915
Query 872 CAGTTTTCCGGTAGTTACTTGTTCGCCGCG-ATTCCGAGGACGGCAAGCTTACTCCGATC 930
|||||||| ||| |||||||| || ||||| ||| |||||| ||||||||||||||||||
Sbjct 916 CAGTTTTCAGGTGGTTACTTGCTCTCCGCGAATT-CGAGGAAGGCAAGCTTACTCCGATC 974
Query 931 TGCTTGTGCATTTGGAACGAGAACGTCACCGCGAATTGGAATTGCTTCTTGGACGCAACG 990
||||||||||| ||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 975 TGCTTGTGCATCTGGAACGCGAACGTCACCGCGAATTGGAATCACTTCTTGGACGCAACG 1034
Query 991 CAGTTTCTAGGTTTCCTCAACGTGGTCGCCTCCAGTCAATGTTGCGGCTAAGGAGTCTCA 1050
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1035 CAGTTTCTAGGTTTCCTCAACGTGGTCGCCTCCAGTCAATGTTGCGGCTAAGGAGTCTCA 1094
Query 1051 AACGCGGCCTAGCGATTCAAGATCGTCATCGTGGTACCACGAAAGGCGATTCAAATCGCT 1110
|||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||
Sbjct 1095 AACGCGGCCTAGCGATTCAAGATCGTCATCGTGGTACCACAAAAAGCGATTTGAATCGCT 1154
Query 1111 TCCAACCTAGTTCTACAATTCTTCATCTAAGCGAAAAATTCCGGGAAAACGCAGCAAACA 1170
|||||||||||||||||||||| |||||||| |||||| |||||||||| |||||||||
Sbjct 1155 TCCAACCTAGTTCTACAATTCTCCATCTAAGAGAAAAACTCCGGGAAAAAGCAGCAAACG 1214
Query 1171 CTGACGCTGAAGCCAAACAAAAGAAGGGCCAACAATACACCGTAGAAACAGAGAGCATGG 1230
||| |||||||||| || ||||||||| ||||||| ||||||||||||||||||||||
Sbjct 1215 CTGCCGCTGAAGCCGGACTAAAGAAGGGTCAACAATCCACCGTAGAAACAGAGAGCATGC 1274
Query 1231 GGTCAAAAGAAATGACTTTTACTATTGATACGCCTTCCACAGAGCGATTAAGCCCTCAAA 1290
||||||||||| | | || | || || | ||||| |||||||| ||||| |||||||
Sbjct 1275 AGTCAAAAGAAACCAGTGGTATTCTTCATTCTCCTTCTACAGAGCGGTTAAGTCCTCAAA 1334
Query 1291 ACCGTAACATAGAGGAAGCAATCTTACGCAAGAACGAAAC--AAA--AA--TGAATTACC 1344
| || ||||||||||||||||||||||||||||||||||| ||| || ||| |||||
Sbjct 1335 AACGCAACATAGAGGAAGCAATCTTACGCAAGAACGAAACTGAAACCAAAATGAGTTACC 1394
Query 1345 TTCAGCTGAACAAAGCCATAGTAGCAGAAGTTTTGAAAAGAAAATCTGATAACACTAGCC 1404
|||||||||| |||||||||||||||||||| ||| ||||| |||||||||||||||| |
Sbjct 1395 TTCAGCTGAAAAAAGCCATAGTAGCAGAAGTATTGGAAAGAGAATCTGATAACACTAGTC 1454
Query 1405 CTATCACCAGCGTAACTCATCAAGAACCGCGGATACTAGGGAAGGAGCAAGCGAACAAAG 1464
|| ||||||||||||||| ||||||||||||||||||| |||| ||| ||||| |||
Sbjct 1455 CTCTCACCAGCGTAACTCCTCAAGAACCGCGGATACTAAGGAACGAGGAAGCGGGGAAAC 1514
Query 1465 TAGAAAGCAGTAC-GCAGAGAACTCAAGAGACACCGTTCCTTGAGACACAAGAAACGTCA 1523
|||||||| |||| | || |||||||||||||||||||||||||||||||||||| ||||
Sbjct 1515 TAGAAAGCGGTACAG-AGGGAACTCAAGAGACACCGTTCCTTGAGACACAAGAAATGTCA 1573
Query 1524 TTCCAAAGCGGATGGGAAGAGCAAGAAGAGTATGAGGATGAGCAGTCTTATTACGGAGAC 1583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1574 TTCCAAAGCGGATGGGAAGAGCAAGAAGAGTATGAGGATGAGCAGTCTTATTACGGAGAC 1633
Query 1584 ATGAGCTACGATTGGTTTACAGAAATATCTCGGCCTCGGACTTACTGGGAAGATCTGAGG 1643
|||||||| || |||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 1634 ATGAGCTATGACTGGTTTACAGAAATATCTAGGCCTCGGACTTATTGGGAAGATCTGAGG 1693
Query 1644 AAATCTCGGTATCTGGAAGTGATGAACACTAAATCTGACAAGGGCGATATATGCAGACTT 1703
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1694 AAATCTCGGTATCTGGAAGTGATGAACACTAAATCTGACAAGGACGATATATGCAGACTT 1753
Query 1704 CTTGAGAGAAGAACCGTTTCGGATTTCCTCCAAAGCGGATTACGAGAGAAGATCGATAAG 1763
|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1754 CTTGAGAGAAGAACGGTTTCGGGTTTCCTCCAAAGCGGATTACGAGAGAAGATCGATAAG 1813
Query 1764 CTCATAATGGCCCGTGTTCAGATACATCCGGCTCACCGTATTCCACAAGCATGTAAAGAA 1823
||||||||| |||||||||||||||||||||||||||| ||| | ||||| ||||||
Sbjct 1814 CTCATAATGTCCCGTGTTCAGATACATCCGGCTCACCGGATTGAAGAAGCAACTAAAGAG 1873
Query 1824 GAAGAGAAATGTGACATAGGCGAAGAAAAAGATGAAGACAGAGATGACTTGAGCCAATCA 1883
|||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1874 GAAGAGAAATATGACATAGGAGAAGAAAAAGATGAAGACAGAGATGACTTGAGCCAATCA 1933
Query 1884 TCATCACAAATATTTGCACCGTCTCCGGCAGGATCATGGAGTTCTCAGGACACAGGAGTT 1943
|||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1934 TCATCACAGATATTTGCACCGTCTCCGGCAGGATCATGGAGTTCTCTGGACACAGGAGTT 1993
Query 1944 ACTTCCACACCAACGCACAATCTTCATTCCAATCTCCAACTAGAAATGTCTGAGCTACGA 2003
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1994 ACTTCCACACCAACGCACAATCTTCATTCCACTCTCCAACTAGAAATGTCTGAGCTACGA 2053
Query 2004 GACTCTGTCAAAACGTGTTTGGACGTAAACGCTAGCCTTCAAAAGTCGGTTCAGCGGGAA 2063
|||||||||||||||||||||||||| || ||||||||||||||||||||||| | ||||
Sbjct 2054 GACTCTGTCAAAACGTGTTTGGACGTCAATGCTAGCCTTCAAAAGTCGGTTCACCTGGAA 2113
Query 2064 AACCCCTTGAAACGCAAATGCTGCGTTTGTAACGAAACGCAAGTTGAAACACTTTTATAC 2123
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2114 AATCCCTTTAAACGCAAATGCTGCGTTTGTAACGAAACGCAAGTTGAAACACTTTTATAC 2173
Query 2124 AGGTGCGGGCACATGTGTACATGCCTGAGATGCGCAAACGAACTACAATATAATGGCGGG 2183
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2174 AGGTGTGGGCACATGTGCACATGCCTGAGATGCGCAAACGAACTACAATATAATGGCGGG 2233
Query 2184 AAATGCCCGATTTGTCATGCCAAGATTCTAGACGTTGTTCGCGTTTTCGTCGATTCAAGA 2243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2234 AAATGCCCGATTTGTCATGCCAAGATTCTAGACGTTGTTCGCGTTTTCGTCGATTCAAGA 2293
Query 2244 ACCTGAAATTAATAATACAAAGGGTTCAAAACGCTAACAATACTTCACTTTATCTATAAC 2303
|||||||||| |||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 2294 ACCTGAAATTCATAAAACCAAGGGTTCAAAACGCTAACAATACTTCACTTTATCTATAAC 2353
Query 2304 ACGTTTTCTTTTTTCAGTTCCTCTGTTTGCTTTCAAGTCTGACTGG--CGCGTTTGCGTT 2361
| ||||| |||| | ||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 2354 ATGTTTT-TTTT---A-TTCCTCTGTTTGCTTTCAAGTTTGACTGGAGCGCGTTTGCGTT 2408
Query 2362 TTGGATCTGCGTCCGAGATTCATATCTATGCTTTTTATAGGTGAATCACTAACCAAATCT 2421
|||||||||||||| ||||||||| ||||| ||||||||||||||||||||||| |||||
Sbjct 2409 TTGGATCTGCGTCCAAGATTCATACCTATGGTTTTTATAGGTGAATCACTAACCCAATCT 2468
Query 2422 ATTTTCTTGACGTTGAAGTTTGCGTCTTGTAAAGATACTCTACATATGCCTCCTTTCACT 2481
||||||||||||||||||||| ||||||||||| |||||||||| |||||||||||||||
Sbjct 2469 ATTTTCTTGACGTTGAAGTTTTCGTCTTGTAAAAATACTCTACACATGCCTCCTTTCACT 2528
Query 2482 TTCCTT-CCATCAAATTGGAATAGGATTTGTAGAATGTACGAGGTTTAGTATTTACCGTT 2540
|||||| ||||||| |||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 2529 TTCCTTTCCATCAATTTGGAACAGGATTTGTAGAATGTACGAGGTTTAGTATTTACCGAT 2588
Query 2541 TATTCTATATGTTT-TTGTGTGTACCAATCT 2570
|||||||||| | | |||| |||||||||||
Sbjct 2589 TATTCTATAT-TCTGTTGTATGTACCAATCT 2618
> AT2G34910.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: root hair specific 4 (TAIR:AT1G30850.1); Has 43 Blast
hits to 43 proteins in 9 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr2:14726800-14728128
FORWARD LENGTH=1329
Length=1329
Score = 102 bits (55), Expect = 2e-20
Identities = 68/74 (92%), Gaps = 2/74 (3%)
Strand=Plus/Minus
Query 2498 GGAATAGGATTTGTAGAATGTACGAGGTTTAGTATTTACCGTTTATTCTATATGTTT-TT 2556
|||| |||||||||||||||||||||||||||||||||||| ||||||||||| | | ||
Sbjct 1329 GGAACAGGATTTGTAGAATGTACGAGGTTTAGTATTTACCGATTATTCTATAT-TCTGTT 1271
Query 2557 GTGTGTACCAATCT 2570
|| |||||||||||
Sbjct 1270 GTATGTACCAATCT 1257
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 127624702992
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5