BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg482457

Length=267
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G34925.1 | Symbols: CLE42 | CLAVATA3/ESR-RELATED 42 | chr2:1...   399    5e-111


> AT2G34925.1 | Symbols: CLE42 | CLAVATA3/ESR-RELATED 42 | chr2:14734270-14734536 
FORWARD LENGTH=267
Length=267

 Score =  399 bits (216),  Expect = 5e-111
 Identities = 250/267 (94%), Gaps = 0/267 (0%)
 Strand=Plus/Plus

Query  1    ATGAGATCTCCTCACATCATCATTTCACTTGTTCTCTTCTTCTTCCTTTCTCTAATCCTC  60
            ||||||||||||||||||| ||||||||||||| |||| ||||| |||| ||||||| ||
Sbjct  1    ATGAGATCTCCTCACATCACCATTTCACTTGTTTTCTTGTTCTTTCTTTTTCTAATCATC  60

Query  61   CAAACCCACCAAAGAACCACTGATCAAACTCACCAGATTGGCTCCAATGTTCAACATTTT  120
            |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| | 
Sbjct  61   CAAACCCATCAAAGAACCATTGATCAAACTCACCAGATTGGCTCCAATGTTCAACATGTC  120

Query  121  AGTGACATGGCGGTGACTTCGCCGGAAGGGAAAAGAAGAGAGAGGTTTAGAGTTCGGCGG  180
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  121  AGTGACATGGCGGTGACTTCGCCTGAAGGGAAAAGAAGAGAGAGGTTTAGAGTTCGGCGG  180

Query  181  CCGATGACAACATGGCGGAAGGGGAAGATGCTCGGTGCCAATGAACATGGAGTCCCAAGT  240
            |||||||| ||||||| |||||| |||||| |||||||||||||||||||||||||||||
Sbjct  181  CCGATGACGACATGGCTGAAGGGAAAGATGATCGGTGCCAATGAACATGGAGTCCCAAGT  240

Query  241  GGTCCAAATCCCATTTCGAATAGGTAG  267
            |||||||||||||| || |||||||||
Sbjct  241  GGTCCAAATCCCATCTCCAATAGGTAG  267



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12215063007


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5