BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482458
Length=2824
Score E
Sequences producing significant alignments: (Bits) Value
AT2G34930.1 | Symbols: | disease resistance family protein / L... 4276 0.0
> AT2G34930.1 | Symbols: | disease resistance family protein /
LRR family protein | chr2:14737066-14739904 REVERSE LENGTH=2839
Length=2839
Score = 4276 bits (2315), Expect = 0.0
Identities = 2656/2821 (94%), Gaps = 22/2821 (1%)
Strand=Plus/Plus
Query 14 TCAAGCTCAGGCC-ACGCTTTTTCATCTCCTCTT-TGTTTCTC-TTCTTACTTCTCAAAA 70
||||||| ||||| | |||| ||||||| || || || ||||| || |||||||||||||
Sbjct 26 TCAAGCTAAGGCCTA-GCTTCTTCATCT-CTTTTCTGATTCTCATT-TTACTTCTCAAAA 82
Query 71 ATCCTAATCT-TGGATCTGCAGCTAATCCTAAATGCATATCCACCGAGCGACAAGCTCTT 129
||| |||| | ||||||||||||| ||| |||||||||||||||||||| |||||||||
Sbjct 83 ATCTTAAT-TACGGATCTGCAGCTAGTCCGAAATGCATATCCACCGAGCGGCAAGCTCTT 141
Query 130 CTCACCTTCAGAGCATCACTAACTGATCTTTCGAGTAGACTCTTTTCTTGGTCTGGACCT 189
||||||||||||||| |||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 142 CTCACCTTCAGAGCAGCACTAACTGATCTTTCGAGTAGGCTCTTTTCTTGGTCCGGACCT 201
Query 190 GACTGCTGCAACTGGCCCGGTGTTCTTTGCGACGCTCGAACCAGCCGCGTCATCAAGATT 249
|||||||||||||||||||||||||||||||| ||||| ||||||| ||| ||||||||
Sbjct 202 GACTGCTGCAACTGGCCCGGTGTTCTTTGCGATGCTCGGACCAGCCACGTTGTCAAGATT 261
Query 250 GATCTCAGAAACCCGAATCAAGATGTTCGCTCCGATGAGTATAAAAGAGGTTCCTTGCGA 309
|||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 262 GATCTCAGAAACCCGAGTCAAGATGTTCGCTCTGATGAGTATAAAAGAGGTTCCTTGCGA 321
Query 310 GGTAAGTTACATCCGTCTTTGACTCAACTCAAGTTCTTGAGCTATCTGGACTTGAGTTCA 369
|| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 322 GGGAAGATACATCCGTCTTTGACTCAACTCAAGTTCTTGAGCTATCTGGACTTGAGTTCA 381
Query 370 AATGATTTCAATGGACTGGAGATCCCCGAGTTTATTGGCCAAATCGCTAGTCTAAGGTAC 429
||||||||||||| ||| ||||| || ||||||||||||||||| | |||||||||||||
Sbjct 382 AATGATTTCAATGAACTAGAGATTCCTGAGTTTATTGGCCAAATTGTTAGTCTAAGGTAC 441
Query 430 CTGAATCTTTCTTCCTCATCGTTTTCTGGCGAGATTCCTGCGAGTCTTGGGAATTTGTCT 489
|||||||||||||||||||||||||| ||||| || || |||||||||| ||||||||
Sbjct 442 CTGAATCTTTCTTCCTCATCGTTTTCCGGCGAAATCCCAACGAGTCTTGGAAATTTGTCG 501
Query 490 AAGCTGGAGTCACTTGATCTGTACGCTGAGTCGTTTGGTGACTCTGGTACGTT-TGCTTT 548
||||||||||| ||||||||||| || ||||||||||||||||||||||| || | | ||
Sbjct 502 AAGCTGGAGTCTCTTGATCTGTATGCAGAGTCGTTTGGTGACTCTGGTACATTAT-CATT 560
Query 549 GCGCGCAAGCAACCTCGGGTGGCTTTCAGGTCTGTCTTCTTCTCTCAAGTACCTCAACAT 608
|||||||||||| ||| ||||||||||| ||||||||||||| || ||||| ||||||||
Sbjct 561 GCGCGCAAGCAATCTCCGGTGGCTTTCAAGTCTGTCTTCTTCCCTGAAGTATCTCAACAT 620
Query 609 GGGGTATGTGAATTTGAGTGGTGCGGGTGAAACCTGGTTACAGGATTTCAGCAGAGTCTC 668
||||||||| ||| | ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 621 GGGGTATGTAAATCTAAGTGGTGCGGGTGAAACCTGGTTACAGGATTTCAGCAGAATCTC 680
Query 669 GGCGCTAAAGGAGTTGCGTTTGTTCAACT-GTGAGCTCAAGAACTTACCTCCCTCATTAT 727
||||||||||||||||| ||||||||| | ||||||||||||||||||||||| | || |
Sbjct 681 GGCGCTAAAGGAGTTGCATTTGTTCAA-TAGTGAGCTCAAGAACTTACCTCCCACCTTGT 739
Query 728 CTTCGTCTGCGGATCTGAAGCTCCTTGAAGTTCTTGATTTGTCTGAAAACTCTCTCAATT 787
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 740 CTTCGTCTGCGGATCTGAAGCTCCTTGAAGTTCTTGATTTGTCTGAAAACTCTCTCAATT 799
Query 788 CGCCGATACCCAAGTGGCTATTTGGTCTCACCAACCTCAGAAAGCTATTCCTCAGATGGG 847
|||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 800 CGCCGATACCTAACTGGCTATTTGGTCTTACCAACCTCAGAAAGCTATTCCTCAGATGGG 859
Query 848 ATTTTCTCCAGGGTTCGATTCCTTCAGGGTTCAAGAACTTGAAGCTTCTAGAGACACTTG 907
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 860 ATTTTCTCCAGGGTTCGATTCCTACGGGGTTCAAGAACTTGAAGCTTCTAGAGACACTTG 919
Query 908 ATCTGTCAAATAATCTGGCACTACAGGGCGAGATTCCATCGGTTCTTGGAGATCTTCCTC 967
||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 920 ATCTGTCGAATAATCTGGCACTACAAGGCGAGATTCCATCGGTTCTTGGAGACCTTCCTC 979
Query 968 CACTGAAGTTTCTTGACCTTTCTGCTAACGAACTCAATGGTCAAATCAATGGGTTTCTAG 1027
|||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||
Sbjct 980 AACTGAAGTTTCTTGACCTTTCTGCAAACGAACTCAACGGTCAAATCCATGGGTTTCTAG 1039
Query 1028 ACGCCTTCTCCAGAAACAAAGGCAACAGCTTGGTCTTTCTCGATCTCAGTTCCAACAAGT 1087
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1040 ACGCCTTCTCCAGAAACAAAGGAAACAGCTTGGTCTTTCTCGATCTCAGTTCCAACAAGT 1099
Query 1088 TAGCTGGGACATTGCCCGAGTCGCTTGGAGCGTTGAGGAATCTGCAGATTCTGGATCTAT 1147
|||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||| |
Sbjct 1100 TAGCTGGGACATTGCCCGAGTCACTTGGATCGTTGAGGAATCTGCAGACTCTGGATCTTT 1159
Query 1148 CATCGAATTCCTTCACGGGTTCGCTCCCTTCCTCGATAGGAAACATGGCGTCACTGAAGA 1207
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1160 CATCGAATTCCTTCACGGGTTCGGTCCCTTCCTCGATAGGAAACATGGCGTCACTGAAGA 1219
Query 1208 AACTTGATCTTTCTTACAATGCTATGAACGGGACAATCGCGGAAAGCTTGGGGCAGCTTG 1267
|||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 1220 AACTTGATCTTTCTAACAATGCCATGAACGGGACAATTGCGGAAAGCTTGGGGCAGCTTG 1279
Query 1268 CGGAGCTTGTGGATCTGAACTTGATGGCAAATACATGGGGAGGTGTTCTGCAAAAGTCCC 1327
| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |
Sbjct 1280 CAGAGCTTGTGGATCTGAACTTGATGGCGAATACATGGGGAGGCGTTCTGCAAAAGTCAC 1339
Query 1328 ATTTCGTGAATCTCACAAGCTTGAAAAGCATCCGTCTCACAACTGAACCATACAGATCTC 1387
||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1340 ATTTCGTGAATCTCAGAAGCTTGAAAAGCATCCGTCTAACAACTGAACCATACAGATCTC 1399
Query 1388 TTGTCTTCAAGTTACCATCTGCTTGGATTCCTCCTTTCAGACTGGAGTTGATCCAAATCG 1447
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1400 TTGTCTTCAAGTTACCATCTACTTGGATTCCTCCTTTCAGACTGGAGTTGATCCAAATCG 1459
Query 1448 AGAACTGCCGGATCGGTCCTTCCTTTCCAATGTGGCTTCAAGTACAAACCAAGCTCAACT 1507
||||||| ||||||||| | | |||||||||||||| ||||||||||||||||||||||
Sbjct 1460 AGAACTGTCGGATCGGT-C-T-GTTTCCAATGTGGCTCCAAGTACAAACCAAGCTCAACT 1516
Query 1508 TTGTTACACTCAGAAACACTGGAATTGAAGATACAATACCCGATAGCTGGTTCGCAGGAA 1567
|||| ||||||||||||||||| ||||||||||||||||| |||||||||||| | ||||
Sbjct 1517 TTGTCACACTCAGAAACACTGGTATTGAAGATACAATACCGGATAGCTGGTTCTCTGGAA 1576
Query 1568 TCTCTTCTGAAGTAACTTACCTGATTCTAGCAAACAACAGAATCAAAGGTAGATTACCTC 1627
|||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1577 TCTCTTCTAAAGTTACTTACCTAATTCTAGCAAACAACAGAATCAAAGGTAGATTACCTC 1636
Query 1628 AAAAGCTTGCGTTCCCAAAGTTAAACACCATTGATTTGAGCTCCAACAACTTTGAAGGCC 1687
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1637 AAAAGCTTGCGTTCCCAAAGTTAAACACCATTGATTTGAGCTCCAACAACTTTGAAGGCA 1696
Query 1688 CTTTTCCTCTCTGGTCAACAAACGCAACAGAGCTGCGTCTTTATGAGAACAACTTCTCGG 1747
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1697 CTTTTCCTCTCTGGTCTACAAACGCAACAGAGCTGCGTCTTTACGAGAACAACTTCTCGG 1756
Query 1748 GTTCTCTTCCACTTAATATTGATGTCTTGATGCCGGGAATGCAGAAAATCTACCTCTTTC 1807
|||||||||||| || ||||| ||||||||||| ||||| |||| ||||||||||||
Sbjct 1757 GTTCTCTTCCACAAAACATTGACGTCTTGATGCCAAGAATGGAGAAGATCTACCTCTTTA 1816
Query 1808 GCAACAGCTTCACAGGCAACATCCCATCGTCTCTATGTGAAGTCTCCGGACTGCAAATTC 1867
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1817 GCAACAGCTTCACAGGCAACATCCCATCGTCTCTATGTGAAGTCTCCGGACTGCAAATTC 1876
Query 1868 TGTCTCTAAGGAAGAACCATTTCTCTGGTAGTTTTCCAAAATGCTGGCACCGTCAGTTCA 1927
|||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1877 TGTCACTGAGGAAGAACCATTTCTCTGGTAGTTTTCCAAAATGTTGGCACCGTCAGTTCA 1936
Query 1928 TGCTTTGGGGAATTGACGTGTCAGAGAATAACTTATCAGGCGAAATACCAGAGTCTCTCG 1987
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 1937 TGCTTTGGGGAATTGACGTGTCTGAGAATAACTTATCAGGCGAAATACCAGAGTCTCTTG 1996
Query 1988 GTATGTTACCTTCTCTCAGCGTCTTGCTTCTGAACCAAAATGCGTTGGAAGGTAAAATCC 2047
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1997 GTATGTTACCTTCTCTCAGCGTCTTGCTTCTGAACCAAAATTCGTTGGAAGGTAAAATCC 2056
Query 2048 CAGAGAGTCTTCAGAATTGCTCTGGCCTTACGAACATTGATCTCGGAGGAAACAAGCTGA 2107
|||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 2057 CAGAGAGTCTTCGGAATTGTTCTGGCCTTACGAACATAGATCTCGGAGGAAACAAGCTGA 2116
Query 2108 CTGGGAAGCTTCCTTCATGGGTAGGAAAGCTGTCTTCTCTGTTCATGCTTCGTCTGCAAA 2167
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2117 CCGGGAAGCTTCCTTCATGGGTAGGAAAGCTGTCTTCTCTATTCATGCTTCGTCTGCAAA 2176
Query 2168 GTAACTCCTTCACTGGTGCAA-TCCCAGATGATCTCTGCAGCGTTCCGAATCTACGCATT 2226
||||||||||||||||| ||| |||||||||||||||||| |||||| ||||||||||||
Sbjct 2177 GTAACTCCTTCACTGGT-CAAATCCCAGATGATCTCTGCAACGTTCCAAATCTACGCATT 2235
Query 2227 CTGGACCTCTCCGGAAACAAAATCTCGGGCCCGATTCCAAAATGCATCAGCAATCTCACA 2286
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2236 CTGGACCTCTCCGGAAACAAAATCTCGGGCCCTATTCCAAAATGCATCAGCAATCTCACA 2295
Query 2287 GCCATTGCTCGAGGTACAAGCAATGAGGTGTTCCAGAATCTAGTCTTCATTGTGACAAGA 2346
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 2296 GCCATTGCTCGAGGTACAAACAATGAGGTGTTCCAGAATCTAGTCTTCATTGTGACCAGA 2355
Query 2347 GCTCGTGAATACGAAAACATAGCCAATAGCATAAA-CTTTTCGGGGAACAACATAAGCGG 2405
||||||||||||||| |||||||||||||||||| |||| | |||||||||||||||||
Sbjct 2356 GCTCGTGAATACGAAGCCATAGCCAATAGCATAAATCTTT-CAGGGAACAACATAAGCGG 2414
Query 2406 AGAGATCCCAAGAGAAATCTTGGGCCTCTTGTATCTTCGAATCCTGAATTTATCCAGAAA 2465
||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||
Sbjct 2415 AGAGATCCCAAGAGAAATCTTAGGCCTCTTGTATCTCCGAATCCTGAATTTATCAAGAAA 2474
Query 2466 CTCCATAGCAGGAAGCATTCCCGAGAGAATATCAGAACTG-GCTCGCTTGGAGACGCTTG 2524
|||||| ||||||||||||||||||| ||||||||||||| | |||||||||||||||||
Sbjct 2475 CTCCATGGCAGGAAGCATTCCCGAGAAAATATCAGAACTGAG-TCGCTTGGAGACGCTTG 2533
Query 2525 ATTTATCAAGAAACAAGTTTTCTGGACCCATTCCTCAGAGCTTGGCAGCAATATCTTCTC 2584
|| |||||| |||||||||||||||| |||| ||||||||||| ||||||||||||||||
Sbjct 2534 ATCTATCAAAAAACAAGTTTTCTGGAGCCATACCTCAGAGCTTCGCAGCAATATCTTCTC 2593
Query 2585 TGCAAAGGCTTAATCTTTCATACAATAAACTGGAGGGGAGCATACCTAAGCTTCTCAAAT 2644
|||||||||| |||||||| | |||||||||||||||||||||||||||||||||||| |
Sbjct 2594 TGCAAAGGCTGAATCTTTCGTTCAATAAACTGGAGGGGAGCATACCTAAGCTTCTCAAGT 2653
Query 2645 TTCAAGATCCATCCATATACGTTGGAAATGAGTTACTCTGTGGGAACCCACTTCCTAAAA 2704
|||||||||||||||| ||| |||||||||| |||||||||||||| |||||||||||||
Sbjct 2654 TTCAAGATCCATCCATTTACATTGGAAATGAATTACTCTGTGGGAAACCACTTCCTAAAA 2713
Query 2705 AATGTCCAAAAGACATTAA-TAGCAAAATGTTGTAGTGAATTGAGCATAAGGAAGGTGCT 2763
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2714 AATGTCCAAAAGACATTAAATAGCAAAATGTTGTAGTGAATTGAGCATAAGGAAGGTGCT 2773
Query 2764 AAGAAGTACCTTACAAGATAATGTACCTGCTCATATACCAAAAATAATAGAATTATCAGC 2823
||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 2774 AAGAAGTACCTTACAAGATAATGTACCTGCTCATATACCAATAATAATAAAATTATCAGC 2833
Query 2824 T 2824
|
Sbjct 2834 T 2834
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 140316939571
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5