BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482462
Length=902
Score E
Sequences producing significant alignments: (Bits) Value
AT2G34980.1 | Symbols: SETH1 | phosphatidylinositolglycan synth... 1483 0.0
> AT2G34980.1 | Symbols: SETH1 | phosphatidylinositolglycan synthase
family protein | chr2:14748967-14749878 FORWARD LENGTH=912
Length=912
Score = 1483 bits (803), Expect = 0.0
Identities = 870/903 (96%), Gaps = 2/903 (0%)
Strand=Plus/Plus
Query 1 AATCTCGCCGGAGACTCAATTCCGAGACCCAAATGGAGGAAAGTGGCCTACGGAGGAATG 60
|||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 10 AATCTCGCCGGAGACTCAATTCCGGGACCCAAATGGAGGAAAGTAGCCTACGGAGGAATG 69
Query 61 CAAATCGGATACGACGACAACTACACCGACGAATCGTTCCTCGAAGAAATGGTGATGAAC 120
|||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||
Sbjct 70 CAAATCGGATACGACGACAATTACACAGACGAATCGTTCCTCGAGGAAATGGTGATGAAC 129
Query 121 GCAAACGTCGTGAGGCGTGATTTGCTCAAGGTGATGAAAGACTCTGTCTCTATCTCTCAA 180
|||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 130 GCAAACGTAGTGAGACGTGATTTGCTCAAGGTGATGAAAGACTCTGTCTCAATCTCCCAA 189
Query 181 TACCTCTGCATCGTTGCGCTTGTTGTCTTGGTTTGGGTTCACACTCTTGAATCATCTTTA 240
|||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 190 TACCTCTGCATCGTCGCGCTTGTAGTCTTGGTTTGGGTTCACACTCTTGAATCATCTTTG 249
Query 241 GACGAGAACTCGCTTTTGCTACTTGATCTCTCTCTCTTAGCATCAGGATTCTTAATTCTC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 250 GACGAGAACTCGCTTTTGCTACTTGATCTCTCTCTCTTAGCATCAGGATTCTTAATTCTC 309
Query 301 CTCTTAACCGAAGAAAAAATGTTATCTTTGAGTCTCCTCTTGCGTTATCTCCTCAACATC 360
||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 310 CTCTTAACCGAAGAAAAAATGTTATCTTTGAGTCTCCTCTTGCGTTACCTCGTCAACATC 369
Query 361 TCCTTCTTCACCACGGGGCTTTATATCTTAGCTCCGATTTACCAGACGCTAACGCGATCT 420
||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||||
Sbjct 370 TCCTTCTTCACCACGGGACTTTATATCTTAGCTCCGATTTACCAGACTCTCACGCGATCT 429
Query 421 ATCAGCTCAGATTCGATATGGGCAGTCACAGTTTCACTCCTCTTGCTTCATCTCTTCTTG 480
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 430 ATCAGCTCAGATTCGATATGGGCAGTCACTGTTTCACTCCTCTTGCTTCATCTCTTCTTG 489
Query 481 CATGATTACTCTGGCTCCACCATTAGAGCTCCAGGAGCACTCAAAACTCCGAATTTGACA 540
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 490 CATGATTACTCTGGTTCCACCATTAGAGCTCCAGGAGCACTCAAAACTCCGAATTTGACA 549
Query 541 AGCTGCATATCTGTCAATGCTTCAATTGTTGCATCAGTCTTTGTTGCTTCACGTCTTCCT 600
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 550 AGCTGCATATCTGTCAATGCTTCAATTGTAGCATCAGTCTTTGTTGCTTCACGTCTTCCT 609
Query 601 TCTAGGCTCCATGTTTTTGCTGTGATGCTTTTCTCACTCCAAGTCTTTCTCTTTGCGCCT 660
|||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 610 TCTAGGCTCCATGTCTTTGCTGTGATGCTATTCTCACTTCAAGTCTTTCTCTTTGCGCCT 669
Query 661 CTTGTTACTTACTGCATCAAGAAATTCAACTTTGGGTTGCATCTTCTCTTCTCTTTTGGT 720
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 670 CTTGTTACTTACTGCATCAAGAAATTCAACTTTGGGTTGCATCTTCTCTTCTCCTTTGCT 729
Query 721 CTAATGGGTTTGACGCTTTACTCTATTTATGCGTTGCATAGACtcttcttccttgtcttt 780
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 730 CTAATGGGTTTGACGCTTTACTCTATTTATGCATTGCATAGACTCTTCTTCCTTGTCTTT 789
Query 781 ctt-cttcttgtgcttcttGTCAATGTTGTGTGCCCTTATTGGCTCATAAGGATGCAAGA 839
||| || |||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 790 CTTTCT-CTTGTGCTTCTTGTCAATGTTGTGTGTCCTTATTGGCTCATTAGGATGCAAGA 848
Query 840 GTACAAGTTTGAGATCAATGGTCCTTGGGATGAGGCCAAGCTTTGTTTCGACATTACAGA 899
||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 849 GTATAAGTTTGAGATTAATGGTCCTTGGGATGAAGCCAAGCTTTGTTTCGACATTACAGA 908
Query 900 TTG 902
|||
Sbjct 909 TTG 911
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44055346919
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5