BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482466
Length=864
Score E
Sequences producing significant alignments: (Bits) Value
AT2G35010.1 | Symbols: ATO1, TO1 | thioredoxin O1 | chr2:147542... 974 0.0
> AT2G35010.1 | Symbols: ATO1, TO1 | thioredoxin O1 | chr2:14754271-14756129
FORWARD LENGTH=953
Length=953
Score = 974 bits (527), Expect = 0.0
Identities = 593/626 (95%), Gaps = 0/626 (0%)
Strand=Plus/Plus
Query 38 ATGAAGGGAAATTGGTCGATCGTCCGTCAGGTTCTTCACCGCCGGTTCTCCACTCTCCGG 97
||||||||||||||||||||||| || |||||||||| |||| |||||||||||||||
Sbjct 128 ATGAAGGGAAATTGGTCGATCGTACGAAAGGTTCTTCATCGCCAGTTCTCCACTCTCCGT 187
Query 98 TCCTCGACACCATCGTCGCGATTATCCACTTTCGTCCGACCCCTTGTTCTGGCCCCAAAC 157
|||||||||||||||||||||||||| |||| | ||||||| ||||||||||||||||||
Sbjct 188 TCCTCGACACCATCGTCGCGATTATCTACTTCCATCCGACCGCTTGTTCTGGCCCCAAAC 247
Query 158 TCGATGTCATCGCTGATCGCTAGAAACTCGTTGTTTACTGCCTCCACCATTGGTCCATCC 217
||||| || ||||| ||||||||||| |||||||| |||||||||| |||||||||||||
Sbjct 248 TCGATATCGTCGCTAATCGCTAGAAATTCGTTGTTCACTGCCTCCAACATTGGTCCATCC 307
Query 218 ATCGATTTTAACTTCTCCAACACTTCGCTTCCTCGCCGGAGAAGCTTCGGTTCGGAAGCT 277
|||||||||||||||||||||||||||||||||| ||||||||| || |||||||||||
Sbjct 308 ATCGATTTTAACTTCTCCAACACTTCGCTTCCTCATCGGAGAAGCCTCTGTTCGGAAGCT 367
Query 278 GGAGGTGAAAACGGTGTTGTTATAGTGAAATCAGAGGAAGAGTTCATCAATGCAATGAGC 337
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 368 GGAGGTGAAAATGGTGTTGTTCTAGTGAAATCAGAGGAAGAGTTCATCAATGCAATGAGC 427
Query 338 AAAGCTCAAGATGAATCTTTACCGTCGATCTTCTATTTCACTGCCGTCTGGTGTGGACCA 397
||||||||||||| ||||||||| ||| |||||||||||||||||| |||||||||||||
Sbjct 428 AAAGCTCAAGATGGATCTTTACCATCGGTCTTCTATTTCACTGCCGCCTGGTGTGGACCA 487
Query 398 TGCAGGTTTATCTCTCCTGTAATCGTGGAGCTTAGTAAACAATATCCCGATGTAACTACG 457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 488 TGCAGGTTTATCTCTCCTGTAATCGTGGAGCTTAGTAAACAATATCCCGATGTAACTACG 547
Query 458 TATAAAGTCGACATTGATGAGGGCGGGATTTCGAACACTATCAGCAAGTTGAATATCACG 517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 548 TATAAAGTCGACATTGATGAGGGCGGGATTTCGAACACTATCAGCAAGTTGAATATCACG 607
Query 518 GCTGTGCCAACACTGCATTTCTTCAAAGGAGGCTCGAAGAAAGGCGAGGTTGTGGGTGCA 577
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 608 GCTGTGCCAACACTGCATTTCTTCAAAGGAGGCTCGAAGAAAGGGGAGGTTGTGGGTGCA 667
Query 578 GATGTCACGAAACTGAAGAATCTCATGGAACAGCTCTACAAGTGAAGACCCAATCTTTTC 637
||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 668 GATGTCACGAAGCTGAAGAATCTCATGGAACAGCTCTACAAGTGAAGACCTAATCCGTTC 727
Query 638 TAGTAATGAACGTGTTGAATAGTTGC 663
|||||| ||||||||||||||| |||
Sbjct 728 TAGTAAAGAACGTGTTGAATAGCTGC 753
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42146449333
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5