BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482467
Length=1673
Score E
Sequences producing significant alignments: (Bits) Value
AT2G35020.1 | Symbols: GlcNAc1pUT2 | N-acetylglucosamine-1-phos... 2593 0.0
> AT2G35020.1 | Symbols: GlcNAc1pUT2 | N-acetylglucosamine-1-phosphate
uridylyltransferase 2 | chr2:14756711-14760706 FORWARD
LENGTH=1830
Length=1830
Score = 2593 bits (1404), Expect = 0.0
Identities = 1600/1692 (95%), Gaps = 24/1692 (1%)
Strand=Plus/Plus
Query 1 ATGAAGGAGCCAACGACGGAGATAGAGATTGAAGCTTCGGCTGT--C-ACGA--C-G--- 51
||||||||||||||||||||||||||||||||| |||| ||||| | |||| | |
Sbjct 93 ATGAAGGAGCCAACGACGGAGATAGAGATTGAAACTTCAGCTGTCGCAACGATCCTGCCT 152
Query 52 -AT--GCTGCCTCCGACGGCGTCACCTCATCAGGCGTTAGTGGAGAGGCTCAAGGATTAT 108
| || ||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 153 CCTCCTCTTCCTCCGACGGCGTCACCTCATCAAGCGTTAGTCGAGAGGCTCAAGGATTAT 212
Query 109 GGACAGGAAGATGTTTTCGCTCTCTGGGATGAACTCTCACCGGAAGAGCGAGATCTCCTC 168
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 213 GGACAGGAAGATGTTTTCTCTCTCTGGGATGAACTCTCACCGGAAGAGCGAGATCTCCTC 272
Query 169 CTCCA-AGATATCGAGAATTTGGATCTTCCAAGGATAGATCGGATCATCAGATGCTCACT 227
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 273 CT-CAGAGATATCGAGAATTTGGATCTTCCAAGGATAGATCGGATCATCAGATGCTCACT 331
Query 228 TCAGTCTCAAGGTTTACCAGTGGCGGCAATAGAACCGGTGCCGGAGAATTGTGTGTCAAC 287
||| || ||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 332 TCATTCACAAGGGTTGCCAGTGGCGGCAATAGAACCGGTGCCGGAGAATTGTGTGTCAAC 391
Query 288 GGTGGAGGAAAGAACAAAGGAAGACAGAGAAAAATGGTGGAAAATGGGATTGAAAGCTAT 347
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 392 GGTGGAGGAAAGAACTAAGGAAGACAGAGAAAAATGGTGGAAAATGGGATTAAAAGCTAT 451
Query 348 CTACGAAGGGAAATTGGGTGTGGTTCTTTTATCTGGTGGACAGGGAACGAGACTTGGAAG 407
||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 452 CTACGAAGGCAAATTGGGTGTGGTGCTTTTATCTGGTGGACAGGGAACAAGACTTGGAAG 511
Query 408 TTCAGATCCAAAAGGGTGTTATAATATCGGACTGCCATCTGGGAAGTCACTTTTTCAGAT 467
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 512 TTCAGATCCAAAAGGGTGTTATAATATCGGACTGCCATCTGGGAAATCACTTTTTCAGAT 571
Query 468 TCAAGCTGAGAGTATCTTGTGTGTCCAAAGGCTTGCTGCTCAGGCAATGAGTGAGGCAAG 527
|||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct 572 TCAAGCTGAGAGGATCTTATGTGTCCAAAGGCTTGCTTCTCAGGCAATGAGTGAGGCAAG 631
Query 528 TCCAACTCGCCCAGTTACAATACACTGGTATATAATGACCAGTCCATTTACTCATGAACC 587
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 632 TCCAACTCGCCCAGTTACAATACAGTGGTATATAATGACCAGTCCATTTACTCATGAACC 691
Query 588 AACTCAAAAATTCTTCGAGAGTCACAAGTATTTTGGCCTTGAGCCAGATCAGGTCACCTT 647
||| |||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 692 AACACAAAAATTCTTCAAGAGTCACAAGTATTTTGGCCTTGAACCAGATCAAGTCACCTT 751
Query 648 TTTTCAACAAGGAACTCTACCTTGCATTTCAAAGGATGGCAAGTTTATCATGGAGACACC 707
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 752 TTTTCAACAAGGAACTCTGCCTTGCATTTCAAAGGATGGCAAGTTTATCATGGAGACACC 811
Query 708 TTTCAGTCTAGCCAAGGCTCCGGATGGAAACGGGGGAGTTTATGCAGCTCTAAAATCTTC 767
|||||| ||| ||||||| |||||||| ||||||||||||||| ||||| ||||||||||
Sbjct 812 TTTCAGCCTATCCAAGGCGCCGGATGGGAACGGGGGAGTTTATACAGCTTTAAAATCTTC 871
Query 768 AAGGTTATTTGATGATATGGCTTCGAGGGGGATTAAGTATGTGGATTGCTATGGTGTTGA 827
||||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 872 AAGGTTATTAGAAGATATGGCTTCGAGGGGGATTAAATATGTGGATTGCTATGGTGTTGA 931
Query 828 CAATGTTCTGGTTCGAGTAGCTGACCCTACTTTTCTGGGATACTTCATCGACAAAGGTGC 887
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 932 CAATGTTCTGGTTCGAGTAGCTGACCCTACTTTTCTGGGATACTTCATCGACAAAAGTGC 991
Query 888 AGCTTCAGCTGCAAAAGTAGTGCGCAAGGCATATCCACAGGAAAAAGTTGGAGTATTTGT 947
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 992 AGCTTCAGCTGCAAAAGTAGTGCGCAAGGCATATCCACAGGAAAAAGTTGGAGTATTTGT 1051
Query 948 AAGGAGGGGAAAGGGTGGGCCTTTGACTGTAGTTGAGTACACAGAGCTTGACCAGTCTAT 1007
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1052 AAGGAGGGGAAAAGGTGGGCCTTTGACTGTAGTTGAGTACACAGAGCTTGACCAGTCTAT 1111
Query 1008 GGCTTCTGCAACCAATCAACAAACAGGACGTCTTCAATTTTGCTGGAGTAATGTGTGCTT 1067
|||||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 1112 GGCTTCTGCAACTAATCAACAAACAGGACGTCTTCAATATTGCTGGAGTAACGTGTGCTT 1171
Query 1068 ACACATGTTCACTCTGGATTTCCTTAACCAAGTTGCGAATGGGCTGGAAAAAGACAGCGT 1127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1172 ACACATGTTCACTCTGGATTTCCTTAACCAAGTTGCGAATGGGCTGGAAAAAGACAGCGT 1231
Query 1128 TTACCATTTGGCGGAGAAGAAGATCCCCTCTATAAATGGGGACACAGTGGGACTGAAACT 1187
|||||||||||||||||||||||| || ||||||||||| |||| ||||||||| |||||
Sbjct 1232 TTACCATTTGGCGGAGAAGAAGATACCGTCTATAAATGGCGACATAGTGGGACTAAAACT 1291
Query 1188 AGAACAGTTCATATTCGATTGCTTTCCTTATGCTCCTTCGACTGCACTCTTTGAGGTGTT 1247
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1292 AGAACAGTTCATATTCGATTGCTTTCCTTATGCTCCTTCGACTGCACTTTTTGAGGTGTT 1351
Query 1248 GAGGGAGGAAGAGTTTGCTCCGGTGAAGAACGCGAACGGGTCGAATTTCGACACACCGGA 1307
|||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||
Sbjct 1352 GAGGGAGGAAGAGTTTGCACCGGTGAAGAACGCAAACGGGTCGAATTACGACACACCGGA 1411
Query 1308 AAGCGCGAGACTGTTGGTTCTACGGCTGCACACACGTTGGGTCATAGCAGCTGGTGGATT 1367
|||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 1412 AAGCGCAAGACTGTTGGTTCTACGACTGCATACACGTTGGGTCATAGCAGCTGGTGGATT 1471
Query 1368 TCTAACACACTCCGTTCCTTTATATGCGACTGGTGTGGAAGTGTCACCGTTGTGCTCGTA 1427
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1472 TCTAACACATTCCGTTCCTTTATATGCGACTGGTGTGGAAGTGTCACCATTGTGCTCGTA 1531
Query 1428 CGCTGGAGAAAATCTAGAAACGATTTGTCGGGGAAGAACCTTTCACGCACCATGTGAGAT 1487
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 1532 CGCTGGAGAAAATCTAGAAGCGATTTGTCGGGGAAGAACCTTTCACGCACCATGTGAAAT 1591
Query 1488 CTCCCTCTAAtctt-t-cttgctt---cttatttattgttgtaatttggccatct-tctt 1541
|||||||||||||| | ||| ||| ||||| |||| ||||||||| | ||| | ||||
Sbjct 1592 CTCCCTCTAATCTTCTTCTTTCTTTTTCTTATCTATTCTTGTAATTTTGTCAT-TGTCTT 1650
Query 1542 tgctttttcttttggcttgtttctccttttttgttggtgtttggtctttATATATGAACT 1601
||||||||||||||||||| |||| ||||| |||||||||||||||| ||||||||||||
Sbjct 1651 TGCTTTTTCTTTTGGCTTGGTTCTTCTTTTGTGTTGGTGTTTGGTCTCTATATATGAACT 1710
Query 1602 GTAACTGGCGGAGGAGGTCAATAGTAGTCTCTTTTCAATGTGTTTCTCTTCATTATTGCA 1661
|||||||||||||| ||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 1711 GTAACTGGCGGAGGTGGTCA---GTAGTCTCTTTTCAATGTGTTACTCTTCATTATTGCA 1767
Query 1662 ACAATAGTGAAG 1673
||||||||||||
Sbjct 1768 ACAATAGTGAAG 1779
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82680297615
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5