BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482470
Length=2006
Score E
Sequences producing significant alignments: (Bits) Value
AT2G35040.1 | Symbols: | AICARFT/IMPCHase bienzyme family prot... 3225 0.0
> AT2G35040.1 | Symbols: | AICARFT/IMPCHase bienzyme family protein
| chr2:14765160-14768288 REVERSE LENGTH=1997
Length=1997
Score = 3225 bits (1746), Expect = 0.0
Identities = 1927/2012 (96%), Gaps = 21/2012 (1%)
Strand=Plus/Plus
Query 1 GTTTCAAAATCAAACTACTATGCTCAGTTCCGCCGCCACCGCCACCGCCACCTCCGTGAG 60
|||||||||||| |||||||||||||| | | | ||||||||||||||||||||||
Sbjct 1 GTTTCAAAATCAGACTACTATGCTCAG---CTCAG---CCGCCACCGCCACCTCCGTGAG 54
Query 61 TGCTCGCTCCGGCGATATTCTATACGGCTACTTTCGCAAGAAATCCGTCGCGCCTTTTCG 120
||||||||||||||||||||| | ||||| |||||||| ||||||||||||||||||||
Sbjct 55 TGCTCGCTCCGGCGATATTCTCTGCGGCTTGTTTCGCAAAAAATCCGTCGCGCCTTTTCG 114
Query 121 TTTGGCTCAGCCTATCTCTCGTACGTCGCTGCGTCCGAGTTTCGTTGCGGTTCGAGCCAT 180
||| |||||||| ||| ||||||||||||| |||| ||||||||||| |||||||||||
Sbjct 115 TTTTACTCAGCCTGTCTATCGTACGTCGCTGTGTCCAAGTTTCGTTGCTGTTCGAGCCAT 174
Query 181 GGCGGAGTCTCAGACTGCTCAGAGGAATCAGCCGCAATCCTCAGGCTCCTCTGGGGAAAA 240
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 175 GGCAGAGTCTCAGACTGCTCAGAGGAATCAGCCGCAATCCTCAGGCTCCTCTGGGGAGAA 234
Query 241 GCAAGCTTTGATATCTTTATCTGACAAAAGAGATTTGGCTTCTCTTGGCAACGGTCTGCA 300
|||||||||||||||| |||||||||| || || ||||||||||||||||||||||||||
Sbjct 235 GCAAGCTTTGATATCTCTATCTGACAAGAGGGACTTGGCTTCTCTTGGCAACGGTCTGCA 294
Query 301 AGAATTGGGATACACTATTGTTTCTACTGGAGGAACTGCCTCTACTTTGGAGAATGCTGG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 295 AGAATTGGGATACACTATTGTTTCTACTGGAGGAACTGCCTCTACTTTGGAGAATGCTGG 354
Query 361 AGTCTCTGTGACCAAAGTGGAGAAGCTTACTCATTTTCCAGAAATGCTTGATGGTCGTGT 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 355 AGTCTCTGTGACCAAAGTGGAGAAGCTTACTCATTTTCCAGAAATGCTTGATGGCCGTGT 414
Query 421 GAAAACTTTGCACCCAAACATACACGGTGGTATTCTTGCTAGAAGAGATGTGGAGCATCA 480
|||||||||||| ||||||||||| |||||||| || |||||||| ||||||||||||||
Sbjct 415 GAAAACTTTGCATCCAAACATACATGGTGGTATCCTCGCTAGAAGGGATGTGGAGCATCA 474
Query 481 TATGGAAGCTCTTAATGAGCATGGGATTGGTACATTTGATGTGGTGGTTGTCAATTTGTA 540
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 475 TATGGAAGCTCTTAATGAGCATGGGATTGGTACATTTGATGTTGTGGTTGTCAATTTGTA 534
Query 541 TCCGTTCTATGATAAAGTTACTGCTCCAGGTGGGATCAGTTTTGAGGATGGGATTGAGAA 600
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 535 CCCGTTCTATGAAAAAGTTACTGCTCCAGGTGGGATCAGTTTTGAGGATGGGATTGAGAA 594
Query 601 CATCGACATTGGTGGTCCTGCTATGATTAGAGCAGCTGCTAAGAACCACAAAGACGTACT 660
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 595 CATTGACATTGGTGGCCCTGCTATGATTAGAGCAGCTGCTAAGAACCACAAAGACGTTCT 654
Query 661 CATTGTTGTCGATTCAG-AGGATTATCAAGCTGTTTTGGAGTATCTCAAAGGAGGACAGA 719
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 655 CATTGTTGTCGATTCAGGAG-ATTATCAAGCTGTTTTGGAGTATCTCAAAGGAGGACAGA 713
Query 720 GCGACCAACAATTCCGCAGAAAACTTGCGTGGAAGGCGTTTCAGCATGTTGCTGCATATG 779
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 714 GCGACCAACAATTCCGCAGAAAACTTGCGTGGAAGGCCTTTCAGCATGTTGCTGCATATG 773
Query 780 ATTCTGCGGTTTCAGAATGGCTATGGAAGCAGACTGAAGGAAAAGAGAAGTTCCCTCCCA 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 774 ATTCTGCGGTTTCAGAATGGCTATGGAAGCAGACTGAAGGAAAAGAGAAGTTCCCTCCCA 833
Query 840 GCTTTACAGTTCCGGTTGAACTTAAGAGCTCTCTTCGTTACGGTGAAAATCCTCATCAAA 899
|||||||||||||| ||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 834 GCTTTACAGTTCCGCTTGTACTTAAGAGTTCTCTTCGTTACGGTGAAAATCCTCATCAAA 893
Query 900 AAGCTGCATTTTATGTTGATAAGAGCCTTGCTGAAGTGAATGCCGGTGGTATCGCAACAG 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 894 AAGCTGCATTTTATGTTGATAAGAGCCTTGCTGAAGTGAATGCCGGTGGTATCGCAACAG 953
Query 960 CGATTCAACACCATGGAAAGGAAATGTCATACAACAACTATCTTGATGCTGATGCTGCGT 1019
||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 954 CGATTCAGCATCATGGAAAGGAAATGTCATACAACAACTATCTTGATGCTGACGCTGCAT 1013
Query 1020 GGAACTGTGTGTCGGAATTTGAAAACCCAACATGTGTAGTCGTGAAGCATACAAATCCTT 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1014 GGAACTGTGTGTCGGAATTTGAAAACCCAACATGTGTAGTCGTGAAGCATACAAATCCTT 1073
Query 1080 GTGGTGTGGCCTCTCGTGATGATATTCTTGAGGCTTACCGGCTAGCTGTAAAAGCTGACC 1139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1074 GTGGTGTGGCCTCTCGTGATGATATTCTTGAGGCTTACCGGCTAGCTGTAAAAGCTGACC 1133
Query 1140 CAGTTAGCGCCTTTGGTGGCATTGTAGCTTTCAATGTTGAAGTTGACGAGGTTCTTGCGA 1199
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1134 CAGTTAGTGCCTTTGGTGGCATTGTAGCTTTCAATGTTGAAGTTGACGAGGTTCTTGCGA 1193
Query 1200 GGGAGATCCGAGAGTTCAGGAGCCCAACAGACGGGGAAACTAGAATGTTTTATGAAATCG 1259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1194 GGGAGATCCGAGAGTTCAGGAGCCCAACAGACGGGGAAACTAGAATGTTTTATGAAATCG 1253
Query 1260 TGGTAGCTCCAAAGTATACTGCTAAAGGTCTTGAAGTCCTCAAAGGGAAATCAAAAACTT 1319
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1254 TGGTTGCTCCAAAGTATACTGCTAAAGGTCTTGAAGTCCTCAAAGGGAAATCAAAAACTT 1313
Query 1320 TGAGGATCCTTGAAGCTAAAAAGAATGACCAAGGGAAACTATCGCTCAGACAGGTTGGTG 1379
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1314 TGAGGATCCTCGAAGCTAAAAAGAATGACCAAGGGAAACTATCGCTCAGACAGGTTGGTG 1373
Query 1380 GCGGCTGGTTGGCTCAGGAGTCGGACGATTTAACTCCAAAAGACATCAGTTTCAATTGTG 1439
||||||||||||||||||| |||||||||||||||||| |||||||||| ||||||| ||
Sbjct 1374 GCGGCTGGTTGGCTCAGGACTCGGACGATTTAACTCCAGAAGACATCAGCTTCAATTCTG 1433
Query 1440 TGTCAGACAAAACTCCGACTGAAAGTGAACTTGCGGATGCCAAATTTGCCTGGCTCTGCG 1499
| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 1434 TCTCAGACAAAACTCCGACTGAAAGCGAACTTGCGGATGCAAAATTTGCCTGGCTCTGCG 1493
Query 1500 TTAAGCATGTCAAGAGCAATGCCATTGTGATAGCAAAGAACAATTGTATGCTGGGGATGG 1559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1494 TTAAGCATGTCAAGAGCAATGCCATTGTGATAGCAAAGAACAATTGTATGCTGGGGATGG 1553
Query 1560 GAAGCGGACAGCCAAACCGAGTAGAGAGTCTGAGAATAGCTTTCAAGAAAGCTGGCGAGG 1619
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1554 GAAGCGGACAGCCAAACCGAGTAGAGAGTCTGAGAATAGCTTTCAAGAAAGCTGGGGAGG 1613
Query 1620 AAGCCAAAGGAGCTGCCTTGGCCAGTGACGCATTCTTCCCATTCGCTTGGAAAGATGCGG 1679
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1614 AAGCTAAAGGAGCTGCCTTGGCCAGTGACGCATTCTTCCCATTCGCTTGGAAAGATGCGG 1673
Query 1680 TGGAAGAGGCGTGCGAGAAGGGAATAGGAGTGATAGCAGAACCTGGAGGCAGTATTAGAG 1739
|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1674 TGGAAGAGGCGTGCCAGATGGGAATAGGAGTGATAGCAGAACCTGGAGGCAGTATTAGAG 1733
Query 1740 ACCAAGACGCCATTGATTGCTGCAAAAAGTATGGAGTCTCTCTGCTCTTCACCAACGTTA 1799
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1734 ACCAAGACGCTATTGATTGCTGCAAAAAGTATGGAGTCTCTCTGCTCTTCACCAACGTTA 1793
Query 1800 GACACTTCCGCCATTAAGGACGGGTCCCTCCAGTTTTGCTCTTATAA-CA--TCCAAGAG 1856
|||| |||||||||||||||| ||||||||||||||||||||||| || ||||||||
Sbjct 1794 GACATTTCCGCCATTAAGGACACATCCCTCCAGTTTTGCTCTTATAAACACATCCAAGAG 1853
Query 1857 --TTTCTGAAGAAGAAAACCCACCAAAGTCCAAACAAAACACAAAGAGTGGGAAATAAAA 1914
||||||||||||||||||||||||| | ||| | |||||||||||||||||||||
Sbjct 1854 AGTTTCTGAAGAAGAAAACCCACCAAA--C-AAA-A---CACAAAGAGTGGGAAATAAAA 1906
Query 1915 ATGTTGTAACATTAATTTGAATTGCGTTCGACTTTTATGTATGATTAGAACCTGAGAGCT 1974
|||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||
Sbjct 1907 CTGTTGTAACATTAATTTGGATTGCGTTCGAGTTT-ATGTATGATTAGAACCTGAGAGCT 1965
Query 1975 GTTCCTACTTATAAATTTGACACTTTTCACCC 2006
|||||||||||||||||||||| |||||||||
Sbjct 1966 GTTCCTACTTATAAATTTGACATTTTTCACCC 1997
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 99397079100
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5