BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482474
Length=1741
Score E
Sequences producing significant alignments: (Bits) Value
AT2G35100.1 | Symbols: ARAD1 | Exostosin family protein | chr2:... 2669 0.0
AT5G44930.1 | Symbols: ARAD2 | Exostosin family protein | chr5:... 444 2e-123
> AT2G35100.1 | Symbols: ARAD1 | Exostosin family protein | chr2:14793651-14795629
REVERSE LENGTH=1751
Length=1751
Score = 2669 bits (1445), Expect = 0.0
Identities = 1655/1755 (94%), Gaps = 20/1755 (1%)
Strand=Plus/Plus
Query 1 TCATTAGTGAGCTAAGTTGTTCAATCTCTCACCTGAAAACCCTAA-C--CTTCTTCAACC 57
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
Sbjct 2 TCATTAGTGAGCTAAGTTGTTCAATCTCTCACCTGAAAACCCTAACCTTCTTCTTCAATC 61
Query 58 TCCAATGGCGCGTAGATCTTCCCTCCTTAAACGAGCAGCAATCGCCGTCGTATCCGTCAT 117
|||||||||||||| |||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 62 TCCAATGGCGCGTAAATCTTCCCTCCTCAAACGAGCAGCAATCGCCGTCGTCTCCGTCAT 121
Query 118 CGCCATCTATGTAATTCTCAACGCCTCCGTCAGTCGTTCCCTCCCTTCCTCATCCGATCT 177
|||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||
Sbjct 122 CGCCATCTATGTAATTCTCAACGCCTCCGTTAGTCGCTCTCTCCCTTCCTCATCCGATCT 181
Query 178 CCCTCGCCAGCTAATCCGTG-A-A-GACGATGATGAAGGACGTGCTCCGATTCAGCCTAG 234
|||||||||||||||||||| | | || ||||||||||||||||||||||||||||||||
Sbjct 182 CCCTCGCCAGCTAATCCGTGAAGATGATGATGATGAAGGACGTGCTCCGATTCAGCCTAG 241
Query 235 GGTTAGGGTTTACATGTATAATCTCCCCAAGAGATTCACTTACGGTTTAATCGAGCAGCA 294
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 242 GGTTAGGGTTTACATGTACAATCTCCCCAAGAGATTCACTTACGGTTTAATCGAGCAGCA 301
Query 295 CTCAATCGCTCGCGGTGGAATCAAGAAGCCCGTCGATGACGTCACTACGCTTAAGTATCC 354
||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 302 CTCAATCGCTCGCGGCGGAATCAAGAAGCCCGTCGGTGACGTCACCACGCTTAAGTATCC 361
Query 355 GGGTCATCAGCATATGCACGAGTGGTATCTTTTCTCGGATCTTAATCGACCCGAAGTGGA 414
||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 362 GGGTCATCAACATATGCACGAGTGGTATCTTTTCTCGGATCTTAATCAACCCGAAGTTGA 421
Query 415 TCGATCCGGGTCTCCGATTGTCCGTGTCTTGGATCCTGACGACGCTGATCTCTTCTACGT 474
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 422 TCGATCCGGGTCTCCGATTGTCCGTGTCTCGGATCCTGCCGACGCTGATCTCTTCTACGT 481
Query 475 CCCGGTGTTCTCTTCTCTCAGCTTAATTGTGAATGCGGGTCGACCTGTTGAACCTGGATC 534
||| ||||||||||| |||||||||||||| |||||||||||||| |||||| |||||||
Sbjct 482 CCCTGTGTTCTCTTCACTCAGCTTAATTGTAAATGCGGGTCGACCCGTTGAAGCTGGATC 541
Query 535 CGGTTACAGCGACGAGAAGATGCAGGAAGGGTTGATGGAGTGGCTTGAAGGTCAAGAGTG 594
|||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 542 CGGTTACAGCGATGAGAAGATGCAGGAAGGGTTGGTGGAGTGGCTTGAAGGTCAAGAGTG 601
Query 595 GTGGAGGAGGAATGGTGGGAGAGATCACGTGATACCCGCCGGCGATCCGAATGCGTTGTA 654
|||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 602 GTGGAGGAGGAATGCTGGGAGAGATCACGTGATACCCGCAGGCGATCCGAATGCGTTGTA 661
Query 655 TCGGATCTTGGACCGGGTCAAGAATTCGGTTCTGCTCGTGGCGGATTTCGGGCGGTTGAG 714
|||||||||||| |||||||| || | |||||||| || |||||||||||||||||||
Sbjct 662 TCGGATCTTGGATCGGGTCAAAAACGCAGTTCTGCTGGTTTCGGATTTCGGGCGGTTGAG 721
Query 715 GCATGATCAAGGATCGTTCGTCAAGGATGTGGTAATACCTTACTCTCATAGAGTCAATCT 774
|| ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 722 GCCTGATCAAGGATCGTTCGTCAAGGATGTTGTAATACCTTACTCCCATAGAGTCAATCT 781
Query 775 CTTCAATGGAGAAATTGGAG-TGCAGGATCGCAACACATTACTCTTCTTCATGGGAAATC 833
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 782 CTTCAATGGAGAAATTGGAGTTG-AGGATCGCAACACATTACTCTTCTTCATGGGAAATC 840
Query 834 GATATCGCAAAGATGGTGGAAAAGTTCGTGATTTGCTTTTCCAAGTTCTTGAAAAGGAAG 893
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 841 GATATCGCAAAGATGGTGGAAAAGTTCGTGATTTGCTGTTCCAAGTACTTGAAAAGGAAG 900
Query 894 ATGATGTAACAATAAAACATGGAACTCAATCCAGAGAGAACCGACGAGCTGCTACGAAAG 953
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 901 ATGATGTAACAATAAAACATGGAACTCAGTCCAGAGAGAATCGACGAGCTGCTACGAAAG 960
Query 954 GAATGCATACTTCAAAGTTTTGTTTAAATCCTGCGGGTGACACTCCATCTGCCTGCAGAC 1013
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 961 GAATGCATACTTCGAAGTTTTGTTTAAATCCTGCGGGTGACACTCCATCCGCCTGCAGAC 1020
Query 1014 TCTTTGACTCCATTGTCAGTTTGTGTGTGCCCGTGATTGTTAGCGATAACATCGAGTTAC 1073
|||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 1021 TCTTTGACTCCATTGTCAGTTTGTGTGTGCCCCTGATTGTTAGCGATAGTATCGAGTTAC 1080
Query 1074 CTTTCGAAGATGTTATAGATTATAGAAAGTTTTCGATTTTTGTTGAGGCCAATGCAGCTC 1133
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1081 CTTTCGAAGATGTTATAGATTATAGAAAGTTTTCCATTTTTGTTGAGGCCAATGCAGCTC 1140
Query 1134 TGCAGCCCGGTTTTCTGGTGCAGATGCTGAGGAAAATTAAAACCAAGAAGATCCTGGAGT 1193
||||||| || |||||||| ||||||||||||||||| ||||||||||||||||| ||||
Sbjct 1141 TGCAGCCTGGATTTCTGGTTCAGATGCTGAGGAAAATAAAAACCAAGAAGATCCTCGAGT 1200
Query 1194 ATCAGAGAGAGATGCAATCGGTAAGACGGTATTTTGACTATGACAACCCAAATGGAGCAG 1253
|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 ATCAGAGAGAAATGAAATCGGTAAGACGGTATTTTGACTATGACAACCCAAATGGAGCAG 1260
Query 1254 TGAAGGAAATCTGGCGTCAAGTCTCGCAGAAGTTACCACTCATCAAACTAATGAGTAACC 1313
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 1261 TGAAGGAAATCTGGCGTCAAGTCTCCCACAAGTTACCACTCATCAAACTAATGAGTAACC 1320
Query 1314 GCGACAGACGCCTCGTCCTAAGAAATTTGACCGAACCAAACTGCTCATGTCTATGCACAA 1373
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 GTGACAGGCGCCTCGTCCTAAGAAATTTGACCGAACCAAACTGCTCATGTCTATGCACAA 1380
Query 1374 ACCAAACCGGTCTTATCACTTCCATTTAAACAATCTCTTTGTCTTTTGGGAGAGACCTTT 1433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1381 ACCAAACCGGTCTTATCACTTCCATTTAAACAATCTCTTTGTCTTTTGGGAGAGACCTTT 1440
Query 1434 TGGACTGTGGAGGAGCTTGAACAACTTTGTGAC--CACCGAGACTCACACAAGCAGATAT 1491
|||||||||||||||||||| || | || |||||||||| ||||||||||||||
Sbjct 1441 TGGACTGTGGAGGAGCTTGAG-AAGGA-GAGAGTTCACCGAGACTTACACAAGCAGATAT 1498
Query 1492 GCGCC--TCCCTTGGCATAACT--T-CTCCGGTAAGGAAACTGAGAGCACACGCATGGCG 1546
| || |||| |||||||||| | |||||||||| |||||||||||||| |||||| |
Sbjct 1499 TCCCCCCTCCCGTGGCATAACTACTTCTCCGGTAAGCAAACTGAGAGCACATGCATGGTG 1558
Query 1547 ACAGATTCATAAGGAAGAAATATTTGAAATCATTCTTCTTCTGTAGATTCCATTAGTTTT 1606
|||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 1559 ACAGATTCATAAGGAAGATATATTTGAAATCCTTCTTCTTCTGTAGATTCCATTAGTTTT 1618
Query 1607 ATTGTTCTTGATAGTGTTACATTTTATACGGACCCAACTGCCATTCTTTTTTACTCTGTT 1666
|||||||| |||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 1619 ATTGTTCTCGATAGTGTTACAATTTATACGGACCCAACTGCCATTCTTTTCTACTCTGTT 1678
Query 1667 ACTACTGTACATGTCATAAAAGCGAAACACAACACAAAGCTTGAATTAGTTCTGCGAATA 1726
||| |||||||||||||||||||| ||||||||||||||||||||| || ||| ||||
Sbjct 1679 ACT---GTACATGTCATAAAAGCGAAGCACAACACAAAGCTTGAATTAATTTTGCCAATA 1735
Query 1727 TTTAGAAAATATCAT 1741
|||||||||||||||
Sbjct 1736 TTTAGAAAATATCAT 1750
> AT5G44930.1 | Symbols: ARAD2 | Exostosin family protein | chr5:18138775-18142147
REVERSE LENGTH=2183
Length=2183
Score = 444 bits (240), Expect = 2e-123
Identities = 767/1013 (76%), Gaps = 69/1013 (7%)
Strand=Plus/Plus
Query 329 GATGACGTCACTAC-GCTT-AAGTATCCGGGTCATCAGCATATGCACGAGTGGTATCTTT 386
||||||||||| | | || || ||||||||||||||||||||||| |||||||||||||
Sbjct 271 GATGACGTCAC--CGGGTTGAAATATCCGGGTCATCAGCATATGCATGAGTGGTATCTTT 328
Query 387 TCTCGGATCTTAATCGACCCGAAGTGGATCGA-TCCGGGTCTCCGATTGTCCGTGTCTTG 445
||||||||||| ||||||||||| | ||| | ||||||||||||||| | || ||
Sbjct 329 ACTCGGATCTTACCCGACCCGAAGTTAAACGAGT-CGGGTCTCCGATTGTAAGGGTTTTT 387
Query 446 GATCCTGAC-GACGCTGATCTCTTCTACGTC-CCGGTGTTCTCTTC-TCTCAGCTTAATT 502
|| || | | || || ||| | || |||||| | | | |||||||| | | ||||| |||
Sbjct 388 GA-CCCGGCTGAGGCGGATTTGTTTTACGTCTCTGCT-TTCTCTTCGT-TAAGCTTGATT 444
Query 503 GTGAATGCGGGTCGACCTGTTGAACCTGGATCCGGTTACAGCGACGAGAAGATGCAGGAA 562
||| || ||||| | | | || || | || ||||| || ||| ||||||||| |
Sbjct 445 GTGGATTCGGGT----C-G--G--CCCGGGTTTGGGTACAGTGATGAGGAGATGCAGG-A 494
Query 563 G-GGTTGATGGAG-TGGCTT-GAAGGTCAAGAGTGGTGGAGGAGGAATGGTGGGAGAGAT 619
| | ||| | ||| ||| || ||| ||||||| |||||||||||||| |||||| |||
Sbjct 495 GAGTTTGGT-GAGTTGG-TTAGAAAGTCAAGAATGGTGGAGGAGGAACAATGGGAGGGAT 552
Query 620 CACGTGATACCCGCCGGCGATCCGAATGCGTTGTATCGGATCTTGGACCGGGTCAAGAAT 679
|| ||||| ||||| ||||| ||||||||| | ||| || |||| ||||| ||||||
Sbjct 553 CATGTGATTGTTGCCGGTGATCCAAATGCGTTGAAACGGGTCATGGATCGGGTTAAGAAT 612
Query 680 TCGGTTCTGCTCGTGGCGGATTTCGGGCGGTTGAG-GCATGATCAAGGATCG-TTCGTCA 737
||||| |||| ||| ||||||| | ||||| || ||| || ||||| ||| || || |
Sbjct 613 GCGGTTTTGCTTGTGACGGATTTTGACCGGTTAAGAGCA-GACCAAGGGTCGCTT-GTGA 670
Query 738 AGGATGTGGTAATACCTTACTCTCATA-GAGTCAAT-CTCT-TCAATGGAGAAATTGGAG 794
| || || | |||||||| ||||||| || | || || | | || || || ||||||
Sbjct 671 AAGACGTAATCATACCTTATTCTCATAGGA-TTGATGCT-TATGAA-GGCGAGCTTGGAG 727
Query 795 TGCAGGATCGCAAC-ACATTACTCTTCTTCATGGGAAATCGATATCGCAAAGATGGTGGA 853
| || | | | | || || | |||||||||||||||||||||||||||||||| ||
Sbjct 728 TTAAGCAGAGGACCAAC-TTGTTGTTCTTCATGGGAAATCGATATCGCAAAGATGGAGGC 786
Query 854 AAAGTTCGTGATTTGCTTTTCCAAGTT-CTTGA-AAAGGAAGATGATGTAACAATAAAAC 911
||||| || |||||||||||| ||| | ||||| |||| |||| ||||| || ||||
Sbjct 787 AAAGTCCGAGATTTGCTTTTC-AAGCTGCTTGAGAAAG-AAGAGGATGTTGTGATCAAAC 844
Query 912 ATGGAACTCAATCCAGAGAGAACC-GACGAGCTGCTACGA-AAGGAATGCATACTTCAAA 969
||||| || || |||||||| | || || | || | ||||||||||||| || ||
Sbjct 845 GCGGAACACAGTCAAGAGAGAATATG-CGTGCGGTTAA-ACAAGGAATGCATACGTCTAA 902
Query 970 GTTTTGTTTAAATCCT-GCGGGTGACACTCCATCTGCCTGCAGACTCTTTGACT-CCATT 1027
||||||| || ||| | || ||||| ||| | ||||| |||||| | ||||| | |||||
Sbjct 903 GTTTTGTCTACATC-TAGCTGGTGATACTTCTTCTGCTTGCAGATTATTTGA-TGCCATT 960
Query 1028 G-TCAGTTTGTGTGTGCCCG-TGATTGTTAGCGATAACATCGAGTTACCTTTCGAAGATG 1085
| | ||||| ||||| |||| ||||||| |||||| || ||| ||||||| |||||||
Sbjct 961 GCT-AGTTTATGTGT-CCCGGTGATTGTAAGCGATGGGATTGAGCTACCTTTTGAAGATG 1018
Query 1086 TTATAGATTATAGAAAGTTTTCGATTTTTGTTGAGGCCA-ATGCAGCTCTGCAGCCCGGT 1144
| |||||||| || ||||| || || || |||||| | |||| ||| || | || ||
Sbjct 1019 TCATAGATTACAGGAAGTTCTCTATATTC-TTGAGGAGAGATGCCGCTTTGAAACCAGGG 1077
Query 1145 TTTCTGGTGCAGATGCTGAGGAAAATTAAAACCAAGAA-GATCCTGGAGTATCAGAGAGA 1203
||| |||| ||| |||||||||| | ||| ||| ||| ||| || |||| || | ||
Sbjct 1078 TTTGTGGTTAAGAAGCTGAGGAAAGTGAAA-CCAGGAAAGATTTTGAAGTACCAAA-AG- 1134
Query 1204 G--ATGCAATCGGTAAGACGGTATTTTGACTATGACA-ACCCAAATGGA-GCAGTGAAGG 1259
| ||| || ||| || || |||||||||||| ||| | | ||||||| | ||||| |
Sbjct 1135 GTTATGAAAGAGGTTAGGCGATATTTTGACTAT-ACACATCTAAATGGAAGT-GTGAACG 1192
Query 1260 AAATCTGGCGTCAAGTCT-CGCAGAAGTTACCACTCATCAAACTAATGAGTAA 1311
| |||||| | ||||| | | ||||| |||| || |||||||| |||| |||
Sbjct 1193 AGATCTGGAGACAAGT-TACTAAGAAGATACCGCTAATCAAACTGATGATTAA 1244
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86093934675
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5