BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482477
Length=826
Score E
Sequences producing significant alignments: (Bits) Value
AT2G35120.1 | Symbols: | Single hybrid motif superfamily prote... 1136 0.0
> AT2G35120.1 | Symbols: | Single hybrid motif superfamily protein
| chr2:14805639-14807369 REVERSE LENGTH=840
Length=840
Score = 1136 bits (615), Expect = 0.0
Identities = 767/835 (92%), Gaps = 32/835 (4%)
Strand=Plus/Plus
Query 1 GTCGTAAGAATATAATAATAAGCCGTTCGGTGAGTGCACTCTCTTTGTCTCTCAC---TG 57
|||||||||||||||||||||||||||||||||||||| |||||| |||||||| ||
Sbjct 1 GTCGTAAGAATATAATAATAAGCCGTTCGGTGAGTGCA--CTCTTTCTCTCTCACTGTTG 58
Query 58 TTGTTGTGTATCTGTGCGACGTGCGAGATCTCCAACGAAAAAATGGCTTGTAGACTCTTG 117
||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 59 TTGTTGTGTATCTGTGCGA-----GATCTCTCCAACGAAAAAATGGCTTGTAGACTCTTT 113
Query 118 TGGGCTTCTAGGGTTGCTTCTCATCTAAGGATCTCCGTTGCTCAACGAGGGTTTTCTTCG 177
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 114 TGGGCTTCTAGGGTTGCTTCTCATCTAAGGATCTCCGTTGCTCAACGAGGGTTTTCTTCC 173
Query 178 GTGGTTTTGAAGGATTTGAAATATGCTGATTCACATGAATGGGTGAAGATTGATGGGAAT 237
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 174 GTGGTTTTGAAGGATTTGAAATATGCTGATTCACATGAATGGGTGAAGATTGACGGGAAT 233
Query 238 AAAGCAACCTTTGGTATAACGGATCACGCACAGGACCATTTAGGAGATGTGGTCTATGTG 297
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 234 AAAGCAACCTTTGGTATAACGGATCACGCGCAGGACCATTTAGGAGATGTGGTCTATGTG 293
Query 298 GAGTTACCTGATGTGGGACATTCGGTGTCACAAGGGAAGAGTTTTGGAGCGGTCGAAAGT 357
|||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 294 GAGTTACCTGATGTAGGACATTCGGTGTCACAAGGGAAGAGTTTTGGAGCAGTTGAAAGT 353
Query 358 GTGAAAGCGACTAGCGATATCAATTCTCCAGTCTCGGGTACGGTGGTTGAAGTCAATGAG 417
|||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 354 GTGAAAGCAACTAGCGATATCAATTCTCCAGTCTCGGGTAAGGTGGTTGAAGTCAATGAG 413
Query 418 GAGCTGACCGAGTCCCCTGGATTGGTGAACTCTAGCCCGTATGAACAAGGTTGGATCATA 477
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 414 GAGCTGACCGAGTCCCCTGGATTGGTGAACTCTAGCCCGTATGAACAAGGATGGATCATA 473
Query 478 AAAGTTGAATTGAGTGATGCAGGCGAGGCAGAGAAGCTGATGGATTCAGACAAGTACTCT 537
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 474 AAAGTTGAGCTGAGTGATGCAGGCGAGGCAGAGAAGCTGATGGATTCAGACAAGTACTCT 533
Query 538 AAGTTCTGCGAAGAAGAAGACGCCAAGCACTGAGCTTTTTAATGTTTTTTATATATTTTC 597
|||||||||||||||||||||||||||||||||||||||| | || | |||||
Sbjct 534 AAGTTCTGCGAAGAAGAAGACGCCAAGCACTGAGCTTTTTC-T-------AT-T-TTTTC 583
Query 598 CAG-ACCCTTCTCGACGTTTATACTGCAACACAGATTGTTGTTTTCTCAATCGAGGATCA 656
||| | ||||||| | | || || |||||||||||||||||||||||||||||||||||
Sbjct 584 CAGCATCCTTCTCCAAGCTTCCACCGCAACACAGATTGTTGTTTTCTCAATCGAGGATCA 643
Query 657 AAACGAGATT-CTCCATCT--GTCCATTGGACCGAAAATTCCTATCTCTCGTTCTCCTTC 713
|||||||||| |||||||| |||| |||||| ||||||||| ||||||||||||||||
Sbjct 644 AAACGAGATTTCTCCATCTTTGTCCCTTGGACTGAAAATTCCCATCTCTCGTTCTCCTTT 703
Query 714 TTTCTTTTTATGtttttttttttttttttttAAATTAAATTGTTTGAATAATGGTAGAAA 773
|||||||| |||||||| |||| | |||| |||||||||||||||||||||| |
Sbjct 704 TTTCTTTTCATGTTTTTCTTTTAATG-----AAATGAAATTGTTTGAATAATGGTAGAGA 758
Query 774 ATAATAAGCTTTGG-GAT-AACATTGATTGGATCTTTCATGGAGTTATGCCTTTT 826
||||| |||||||| | | || |||||||||||||||||||||||||||||||||
Sbjct 759 ATAATGAGCTTTGGCGTTGAA-ATTGATTGGATCTTTCATGGAGTTATGCCTTTT 812
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40237551747
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5