BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482479
Length=2775
Score E
Sequences producing significant alignments: (Bits) Value
AT2G35140.1 | Symbols: | DCD (Development and Cell Death) doma... 3498 0.0
> AT2G35140.1 | Symbols: | DCD (Development and Cell Death) domain
protein | chr2:14813421-14816808 FORWARD LENGTH=2724
Length=2724
Score = 3498 bits (1894), Expect = 0.0
Identities = 2508/2793 (90%), Gaps = 87/2793 (3%)
Strand=Plus/Plus
Query 1 CGATCTCTGCGTTTAATATCTCTCGCTATCTTCCGATCTTCG---CCC-CCATCGCCGTT 56
|||||| |||||||||||||| | | || ||||||||||| ||| || ||||||||
Sbjct 1 CGATCTTTGCGTTTAATATCTATATC-CTCCTCCGATCTTCGTCCCCCTCCTTCGCCGTT 59
Query 57 TCGTTTTCCGTTTTCTGTAACAGCCATGCCAAAAAGGAT-GAAGCAT-ATGGAGAAAGTT 114
|||||||||||||||||||||||| ||||| |||| || | || || |||||| || ||
Sbjct 60 TCGTTTTCCGTTTTCTGTAACAGCAATGCCTAAAA--ATCGGAGGATGATGGAGGAATTT 117
Query 115 AATGGTG---CTTCTGGAGAAGATCCAGAATATGGTGCCATTTTCATGTCCAATAACTCA 171
||||||| ||||||||| ||| || || |||||||| |||||||||||||||||||||
Sbjct 118 AATGGTGCTTCTTCTGGAGGAGAGCCGGAGTATGGTGCTATTTTCATGTCCAATAACTCA 177
Query 172 ACCAGGAAGGAATGCCTTAGCCGAGGGCTTTTCGGTTTGCCGATTGGGCTTGCCGGATTT 231
|||||||||||||||||||||||| ||||||||||||||| |||||||| | ||||||
Sbjct 178 ACCAGGAAGGAATGCCTTAGCCGAAAGCTTTTCGGTTTGCCAATTGGGCTAGGAGGATTT 237
Query 232 GTTAAACAGGTCAAAGCTGGAATGATGCTCTTTTTGTTTGAATTCGAGAAGAGAGAGCTA 291
|||||||| || ||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 238 GTTAAACATGTTAAAGCTGGAATGATGTTGTTTTTGTTTGAATTCGAGAAGAGAGAGCTA 297
Query 292 CATGGTGTGTTTCAGGCTTGCTCTGATGGTGCAATAAACATCGAGCCCAATGCATTCCAA 351
||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||
Sbjct 298 CATGGTGTGTTTCAGGCTTGCTCTGATGGTGCAATAAACATTGAGCCTAATGCTTTCCGC 357
Query 352 TCTTCTGGGAAACAGTTTCCTGCTCAGGTCAAGTTTACTGAGAAGTGGCGTTGTAGGCCA 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 TCTTCTGGGAAACAGTTTCCTGCTCAGGTCAAGTTTACTGAGAAGTGGCGTTGTAGGCCA 417
Query 412 CTTTGTGAAAGTGAGTTTGGTAATGCTATCCATGAAAATTACTTCACATCAAAAAAGTTC 471
|||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 418 CTTTGTGAAAGTGAGTTTGGTAATGCTATCCATGAAAATTACTTCACACCAACAAAGTTT 477
Query 472 AAATTTGGACTCTCCAAGGCTCAGGTTCAAAGGCTATTGAAGTTGTTTTGCTTGAAGAAG 531
|| ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 478 AATTTTGGACTCTCCAAGGCTCAGGTTCAAAGGCTATTGAAGTTGTTTAGCATGAAGAAG 537
Query 532 GTAGAGAGATCACGACTGATAGAAACTGCAGCTCCGAAACCATTTAA-AAAATCTGAAAA 590
||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||||
Sbjct 538 GTAGAGAGATCACGACTGAGAGAAACTGCAGCTCCGAAACC-GTTAAGGAAATCTGAAAA 596
Query 591 TGTAGTTGGTGATCGTGGTTTTGGGAATCG-CGATGCAGAAGAAACGGATGGAGATGTTG 649
| ||||||||||||||| ||| ||||||| | ||||| ||||| ||||| ||||||||
Sbjct 597 TACAGTTGGTGATCGTGGCTTTAGGAATCGTTG-TGCAGGAGAAATGGATGAAGATGTTG 655
Query 650 ACCGTGAGTTTCCCATCAGAGTTACATCTGCAGGAGATCATCGTGGTCGTAGGTTAATAG 709
|||||||||||||| ||||||||||| || ||||||||||||| ||||||||||||| ||
Sbjct 656 ACCGTGAGTTTCCCTTCAGAGTTACACCTTCAGGAGATCATCGAGGTCGTAGGTTAACAG 715
Query 710 AGAATTATGGTTGTgggggggAATCTAAATGGACTAGTGGCCTAGAGTATGATCCAACTA 769
|||||||||||| ||||| |||||| | || |||||| |||||||||||||||||||
Sbjct 716 AGAATTATGGTTTTGGGGAGGAATC----T-GA-TAGTGGACTAGAGTATGATCCAACTA 769
Query 770 AAGGGAATGAGTACTCCAGACTCGTTGATTCCAAACTCCATGGGTTGAAGGATAGATTAG 829
|||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||
Sbjct 770 AAGGGAATGAGTACTCCAGACTTGTTGATCCCAAACTGCATGGGTTGAAGGATAGATTAC 829
Query 830 GATGTGAGGTTAGCATGAATAATAATAGCTTTGGCACTGATGCTTTAACTAAGAATTCGT 889
||||| |||||| |||||||||| | | ||||||||| ||||||| ||||||||||||||
Sbjct 830 GATGTAAGGTTACCATGAATAAT-A-A-CTTTGGCACAGATGCTTCAACTAAGAATTCGT 886
Query 890 ATAATTCTCTAGTTAACGATCGAAGAGTCCCGAAGAACTTGAGACACACTGCAAATGGCT 949
|||||||||||||||| ||||||| |||||||||||||||||||||| |||||||||| |
Sbjct 887 ATAATTCTCTAGTTAATGATCGAAAAGTCCCGAAGAACTTGAGACACGCTGCAAATGGAT 946
Query 950 GGTTAGAAAATGATTACCATGAAAAAGATGGTATCGCACAGGCAAGTTCGTGGTCTAACA 1009
||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 947 GGTTAGAAAGTGAGTACCATGAAAAAGATGGTATCGCACAGGCAAGTTTGTGGTCTAACA 1006
Query 1010 ACAAGGAACGCCTTAATTTTGAGGCAGATCCAATGGTTCCCACTCAAAGCTCAGTATCTC 1069
||||||||||||||||||||||| |||||||| ||||||| |||||||||||||| |||
Sbjct 1007 ACAAGGAACGCCTTAATTTTGAGTCAGATCCAGTGGTTCCTGCTCAAAGCTCAGTACCTC 1066
Query 1070 CAGACTTACCATATGGCACAAACACAGGATCCTATGACCCTTATCAGCCCAGCATCATGG 1129
||||||||||||||| ||||||||||||| |||||||||| |||| |||||||||||||
Sbjct 1067 CAGACTTACCATATGAAACAAACACAGGATACTATGACCCTGATCATCCCAGCATCATGG 1126
Query 1130 GAGATACAACAATGACAAGCTCTAGGTATGGTTTTGGTGCACCTAATGTTGATTTAACTG 1189
||||| |||||||||||||||||||| ||||| |||||||||||||||||||| ||||||
Sbjct 1127 GAGATGCAACAATGACAAGCTCTAGGCATGGTCTTGGTGCACCTAATGTTGATCTAACTG 1186
Query 1190 GCTCAGCTTCCTATACAGCCAACTCAAATCATGG-TTTGGGAGAAGATATTATACCTGTT 1248
|||||||||||| |||||| ||||||||| |||| ||| |||||||||||||||||| ||
Sbjct 1187 GCTCAGCTTCCTTTACAGCGAACTCAAATTATGGATTT-GGAGAAGATATTATACCTTTT 1245
Query 1249 GGTGATTATGTCAGTGACGCCTTTCCCTCTAAGACAGTCCAACCATTCCCTGATGAGCAT 1308
||||||||||||||||||||||| ||||| ||| | |||||||||||||||||||||||
Sbjct 1246 GGTGATTATGTCAGTGACGCCTTGCCCTCCGAGAGATTCCAACCATTCCCTGATGAGCAT 1305
Query 1309 AATGCTACACGCATGAACACTAGTAGTCTGGACTC--G-GGTTTCTATATTCCAATGCCT 1365
|||| |||| ||||||||||||||||||||| ||| | |||||||||||||||||||||
Sbjct 1306 AATGGTACAAGCATGAACACTAGTAGTCTGGGCTCGGGTGGTTTCTATATTCCAATGCCT 1365
Query 1366 ATTGAACATCATAAATACCAAATAAACACTGGCATAAATGGTCATTTGCGTCATTCTCAG 1425
|||| | | | || ||| ||||||||||||||||| ||||||
Sbjct 1366 ATTG----------A-A-C--AT------TGG----AATGGTCATTTGCGTCACTCTCAG 1401
Query 1426 TTTCCTGGTCTCTTAACTTCTGCAGGGGACACTGAGAACATGAGGCAGTTTGAAAGGCCG 1485
|||| ||||| ||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 1402 TTTCTTGGTCCCTTAACTTCTGCAGGGGGCACTGAGAACATGAGGGAGTTTGAAAGGCCG 1461
Query 1486 CTGTACTCAGACCGCAACATCTTCCCTTCATTTGTTTATCCTTCATCATCAAGGGGTTTG 1545
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1462 ATGTACTCAGACCGTAACATCTTCCCTTCATTTGTTTATCCTTCATCATCAAGGGGTTTG 1521
Query 1546 TCTCCTAAGGACAGACTCAACAATGAACTTCAAACATATCAACACCAAGAAGAATCTAGA 1605
||| |||||||| ||||||||||||||||||||||||||||||||| ||||||| | ||
Sbjct 1522 TCTACTAAGGACGGACTCAACAATGAACTTCAAACATATCAACACCCGGAAGAATTTGGA 1581
Query 1606 GGTCATGATTCTTATACAAAC-GATATGGTGGTTTGGGGTTCCAGTATTTACCCTTCTTT 1664
| ||||| ||||||||| ||| |||||||||||| ||||| |||||||| ||||||||||
Sbjct 1582 GATCATGTTTCTTATAC-AACTGATATGGTGGTTCGGGGTCCCAGTATTCACCCTTCTTT 1640
Query 1665 TACTAATCCTTCAACATCAGGGGATGAAGCTGATTTGTATCTAGAGAACAGAGCCAATAA 1724
||| |||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||
Sbjct 1641 TACCAATCCTTCAACATCTGGGGATGGAGCTGATTTGTATCCAGAGAACAGAGCCAATAA 1700
Query 1725 CGAAGTTCAAGCTTATCAACGGCAGAAAGAATTTGGCGATGATGCTTTTGACTCTAACAA 1784
|||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||||||
Sbjct 1701 CGAAGTTCAAGCTTATCAACCGCATAAAGAATTTGGCGGTGATGCTTTTGACTCTAACAA 1760
Query 1785 TAGGGTGACTGAAATGAAGAATCGTGTTAAACCTGCTGAACTTGAAGGAAACAAAACCAG 1844
||||||||| | ||||||||| |||||| |||||||| |||||| ||||||
Sbjct 1761 TAGGGTGAC-----T----CATCGTGTTAGTCCTGCTAAACTTGAAAGAAACAGAACCAG 1811
Query 1845 A-GAGAGTGTCTTCAATAGGCTGGGTGGGCGTTCAAAAGAACGTGTTGCTGAAAAGGATA 1903
| | |||||||| |||||| |||||||||||| |||| ||| || |||||||| |||||
Sbjct 1812 ACCA-AGTGTCTTTAATAGGTTGGGTGGGCGTTTAAAACAACTTGATGCTGAAAGGGATA 1870
Query 1904 TGTCTCCGGACACTGAATCAGTCGACGAGGTCATGGCCTTTTTAAACGACCGTCACAAAG 1963
|||||| |||||||||||||| || |||||||||||||||||||| ||| |||||||||
Sbjct 1871 CGTCTCCTGACACTGAATCAGTAGATGAGGTCATGGCCTTTTTAAATGACTGTCACAAAG 1930
Query 1964 ATTGGATGGAGCAAAAAAGAGCAAATATGAGTAATTCTGAGGATTTTGGAAAACCGAAGA 2023
|||||||||||||||||||||||||||||||||||||||| ||| ||| || ||||||||
Sbjct 1931 ATTGGATGGAGCAAAAAAGAGCAAATATGAGTAATTCTGAAGATGTTGCAATACCGAAGA 1990
Query 2024 AGAAAAAGGAAAAGATACATACAGCAGAGGTCAAAAGAGAAAATGATATGATGCTTCCTT 2083
|||||||||||||||| |||||||||||||| | || |||||| |||||||| |||
Sbjct 1991 AGAAAAAGGAAAAGATTCATACAGCAGAGGT---ACTTGACAATGATTTGATGCTTACTT 2047
Query 2084 TTACTGAGACTACTCCAGATAATCTGTTGGATTGTGAAGGAACTATGGAACATAGTGTTC 2143
|||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 2048 TTACTGAGACTACTCCAGATGATCTGTTGGATTGTGAAGGAAGTATGGAACATAGTGTTC 2107
Query 2144 AAAAGCTACCATTCATTGATTTTAAGCGCCGTAGCAAAGCTCGAAGGAGCAGCCTTGGTA 2203
|||||||||||||||||||||||||||||||||||| ||||| || || ||||||||||
Sbjct 2108 AAAAGCTACCATTCATTGATTTTAAGCGCCGTAGCAGAGCTC-AA--AGGAGCCTTGGTA 2164
Query 2204 ATCCAACTCAAGGGTGTAAAGACAGCCCCGAACATTCAGCTTCTCAGAGCAAGAAAAGGA 2263
|||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||
Sbjct 2165 ATCCAACTCAAGGGTGTAAAGACAACCCCGAACATTCAGCTTCTCCGAACAAGAAAAGGA 2224
Query 2264 AGCTGCTGAGACCAAAACTCGTTGAAGATGACTCGGAAAAGGATAGAGGACACAAAGCCG 2323
|||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||| |
Sbjct 2225 AGCTGCTGAGACCAAAACTCGTTGAAGATGACTCAGAAAAGGATAGAGAAAACAAAGCTG 2284
Query 2324 GTCCTATTAAAATTGTCTTGGCCTCGGCAAAAGATAGAGGAAACAATGATCCGATTGTAA 2383
||||||||||||||||||||||||| | ||||||||||||||||||||||| || |||||
Sbjct 2285 GTCCTATTAAAATTGTCTTGGCCTCAGAAAAAGATAGAGGAAACAATGATCTGACTGTAA 2344
Query 2384 AATTCTTGGCCTCAAAGTCAGCTACTGAAGTCCCA-GTCCATGGCTTCCTTGGACGAAAT 2442
|| ||||||||||| ||||| ||||| |||| ||| ||||||| |||||||||||| |||
Sbjct 2345 AAGTCTTGGCCTCACAGTCACCTACTAAAGT-CCATGTCCATGACTTCCTTGGACGTAAT 2403
Query 2443 GAAGGTGACTCGCAAAAGGATAGAGGTAAGAATGATAATCCTATCGAAAATGTCTTGGCC 2502
||||| |||||||||| ||||||||||| ||||||||||||||| |||| ||||||||||
Sbjct 2404 GAAGGCGACTCGCAAATGGATAGAGGTAGGAATGATAATCCTATTGAAACTGTCTTGGCC 2463
Query 2503 TCACAGTCAGCTACTGAAGTCCCCGTCCATGACTTCCTTGGACGTAATGAAGGTGACTCG 2562
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2464 TCACAGTCAGCTACTGAAGTCCCCGTCCATGACTTCCTTGGACGTAATGAATGTGACTCG 2523
Query 2563 CAAAAGGAGAGAGGTAAGAATGATAATCCTATTGAAAATTTATTGGCCTCACAGTCAGCT 2622
|||||||| | || | | | |||| |||||||||||||||||||||||||||||
Sbjct 2524 CAAAAGGA------T--GA-T-A-A-TCCTGTTGAAAATTTATTGGCCTCACAGTCAGCT 2571
Query 2623 ACTGAAGTCCCCGTCCATGACTTCTTTGGACGTGATGAAGATGACTTGGGAAAGGATAGA 2682
|||||||||| ||||| |||||||||||||||| |||||||||||| || |||| ||| |
Sbjct 2572 ACTGAAGTCCACGTCCGTGACTTCTTTGGACGTAATGAAGATGACTCGGAAAAGAATAAA 2631
Query 2683 GGAAAAAATGACGATCCTGTTGAAAATTTCTTGGCCTCAGAGTTTGCTTCTGAAGTCCCC 2742
||||| ||| | ||||||| ||||||||||||||||| ||||| ||||||||||||||||
Sbjct 2632 GGAAACAATAATGATCCTGCTGAAAATTTCTTGGCCTTAGAGTATGCTTCTGAAGTCCCC 2691
Query 2743 TTCCATGACTTCCTTGGATGTGATGATCGATAA 2775
|||||||||||||||||| ||||||| ||||||
Sbjct 2692 TTCCATGACTTCCTTGGACGTGATGAACGATAA 2724
Score = 276 bits (149), Expect = 9e-73
Identities = 263/315 (83%), Gaps = 19/315 (6%)
Strand=Plus/Plus
Query 2456 AAAAGGATAGAGGTAAGAATGATAAT-CCTATCGAAAATGTCTTGGCCTCACAGTCAGCT 2514
|||| |||||||| || |||||| | || | |||| |||||||||||||||||| ||
Sbjct 2312 AAAAAGATAGAGGAAACAATGAT-CTGACTGT--AAAA-GTCTTGGCCTCACAGTCACCT 2367
Query 2515 ACTGAAGTCCCCGTCCATGACTTCCTTGGACGTAATGAAGGTGACTCGCAAAAGGAGAGA 2574
||| |||||| ||||||||||||||||||||||||||||| |||||||||| ||| |||
Sbjct 2368 ACTAAAGTCCATGTCCATGACTTCCTTGGACGTAATGAAGGCGACTCGCAAATGGATAGA 2427
Query 2575 GGTAAGAATGATAATCCTATTGAAAATTTATTGGCCTCACAGTCAGCTACTGAAGTCCCC 2634
|||| |||||||||||||||||||| | | ||||||||||||||||||||||||||||||
Sbjct 2428 GGTAGGAATGATAATCCTATTGAAACTGTCTTGGCCTCACAGTCAGCTACTGAAGTCCCC 2487
Query 2635 GTCCATGACTTCTTTGGACGTGATGAA-GATGACTTGGGAAAGGATAGAGGAAAAAATGA 2693
|||||||||||| |||||||| ||||| | ||||| | ||||||| || | |
Sbjct 2488 GTCCATGACTTCCTTGGACGTAATGAATG-TGACTCGCAAAAGGAT-GA--------T-A 2536
Query 2694 CGATCCTGTTGAAAATTTCTTGGCCTCAGAGTTTGCTTCTGAAGTCCCCTTCCATGACTT 2753
|||||||||||||||| ||||||||| ||| ||| ||||||||| | ||| ||||||
Sbjct 2537 --ATCCTGTTGAAAATTTATTGGCCTCACAGTCAGCTACTGAAGTCCACGTCCGTGACTT 2594
Query 2754 CCTTGGATGTGATGA 2768
| ||||| || ||||
Sbjct 2595 CTTTGGACGTAATGA 2609
Score = 267 bits (144), Expect = 6e-70
Identities = 269/326 (83%), Gaps = 22/326 (7%)
Strand=Plus/Plus
Query 2346 CTCGGCAAA-AGATAGAGG-A--AACAATGATCCGATTGTAAAAT-TCTTGGCCTCAAAG 2400
||| ||||| |||||||| | || || |||| |||| ||| | ||||||||||| ||
Sbjct 2412 CTC-GCAAATGGATAGAGGTAGGAATGATAATCCTATTG-AAACTGTCTTGGCCTCACAG 2469
Query 2401 TCAGCTACTGAAGTCCCAGTCCATGGCTTCCTTGGACGAAATGAAGGTGACTCGCAAAAG 2460
||||||||||||||||| ||||||| |||||||||||| |||||| ||||||||| |
Sbjct 2470 TCAGCTACTGAAGTCCCCGTCCATGACTTCCTTGGACGTAATGAATGTGACTCGC---A- 2525
Query 2461 GATAGAGGTAAGAATGATAATCCTATCGAAAATGTCTTGGCCTCACAGTCAGCTACTGAA 2520
| | | | | ||||||||||| | |||||| | ||||||||||||||||||||||||
Sbjct 2526 -A-A-A-G---G-ATGATAATCCTGTTGAAAATTTATTGGCCTCACAGTCAGCTACTGAA 2577
Query 2521 GTCCCCGTCCATGACTTCCTTGGACGTAATGAAGGTGACTCGCAAAAGGAGAGAGGTAAG 2580
|||| ||||| ||||||| ||||||||||||||| ||||||| ||||| | | ||| ||
Sbjct 2578 GTCCACGTCCGTGACTTCTTTGGACGTAATGAAGATGACTCGGAAAAGAATAAAGGAAAC 2637
Query 2581 AATGATAATCCTATTGAAAATTTATTGGCCTCACAGTCA-GCTACTGAAGTCCCCGTCCA 2639
||| || ||||| ||||||||| ||||||| | ||| | ||| ||||||||||| ||||
Sbjct 2638 AATAATGATCCTGCTGAAAATTTCTTGGCCTTAGAGT-ATGCTTCTGAAGTCCCCTTCCA 2696
Query 2640 TGACTTCTTTGGACGTGATGAA-GAT 2664
||||||| |||||||||||||| |||
Sbjct 2697 TGACTTCCTTGGACGTGATGAACGAT 2722
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 137858759364
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5