BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482480
Length=1173
Score E
Sequences producing significant alignments: (Bits) Value
AT2G35150.1 | Symbols: EXL1 | EXORDIUM like 1 | chr2:14817047-1... 1755 0.0
> AT2G35150.1 | Symbols: EXL1 | EXORDIUM like 1 | chr2:14817047-14818211
REVERSE LENGTH=1165
Length=1165
Score = 1755 bits (950), Expect = 0.0
Identities = 1107/1180 (94%), Gaps = 22/1180 (2%)
Strand=Plus/Plus
Query 1 ATCATAAAACCAACGAGATGAT-TCctctcatcatcttcttctt-ttccctctcactctc 58
|||||||| ||| ||||| ||| | ||||||||||| ||||||| || | |||||||||
Sbjct 1 ATCATAAACCCACCGAGACGATGT-CTCTCATCATCGTCTTCTTCTT-CTTCTCACTCT- 57
Query 59 t-ctcacatctAATGGACAGTTCTTCGACGAGAGCAAGAACTACGAAGGCTCCTCCGATC 117
| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 58 TGCTCACATCCAATGGACAGTTCTTCGACGAGAGCAAGAACTATGAAGGCTCCTCCGATC 117
Query 118 TCGTCGACCTTCAATACCACATGGGTCCGGTCATATCCTCGCCGGTGACGAGTCTTTATA 177
|||| ||||||||||||||| |||||||||||||||||||||||||||||||||| || |
Sbjct 118 TCGTTGACCTTCAATACCACTTGGGTCCGGTCATATCCTCGCCGGTGACGAGTCTCTACA 177
Query 178 TCATTTGGTACGGCCGATGGAACCCAACTCACCAATCTATAATCCGAGACTTTATCTACT 237
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 178 TCATTTGGTACGGCCGATGGAACCCAACTCACCAATCTATAATCCGAGACTTTCTCTACT 237
Query 238 CTATCTCTTCACCGACACCGGCTCAGTACCCGTCAGTATCCAACTGGTGGAAGACAGTGA 297
|| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 CTGTCTCTGCACCGGCACCGGCTCAGTACCCGTCAGTATCCAACTGGTGGAAGACAGTGA 297
Query 298 GGCTATACAGAGACCAGACAGGTTCCAACATCACCGACACTCTTGTCTTGTCCGAAGAGT 357
||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 298 GGCTATACAGAGACCAGACAGGTTCCAACATCACCGACACTCTTGTCTTATCCGGAGAGT 357
Query 358 TCCACGACTCTACGTACTCTCATGGATCTCACCTAACTCGCTTCTCTGTTCAGTCTGTGA 417
|||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 358 TCCACGACTCAACGTACTCTCATGGATCTCATCTCACTCGCTTCTCTGTTCAGTCTGTGA 417
Query 418 TCAGAACTGCCTTGACTTCCAAGTTACCACTAAACGCTGTAAACGGCTTGTACTTAGTCT 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 TCAGAACTGCCTTGACTTCCAAGTTACCACTAAACGCTGTAAACGGCTTGTACTTAGTCT 477
Query 478 TGACCTCGGATGATGTAGAGATGCAAGAGTTCTGCAGAGCGATTTGCGGGTTTCATTACT 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 TGACCTCGGATGATGTAGAGATGCAAGAGTTCTGCAGAGCGATTTGCGGGTTTCATTACT 537
Query 538 TCACTTTCCCAAGCGTTGTTGGTGCAACCGTACCATACGTTTGGGTCGGG-AACAGT-AG 595
||||||||||||||||||| |||||||||||||| || | |||||| ||| |||||| ||
Sbjct 538 TCACTTTCCCAAGCGTTGTGGGTGCAACCGTACCGTATGCTTGGGT-GGGCAACAGTGAG 596
Query 596 GAAACAGTGTCCAGAGATATGCGCGTACCCATTTGCACAACCTAAGCCATTTCCGGGAAG 655
| |||||||||||| || || ||||||||||||||||| ||||||||||||||||| ||
Sbjct 597 -AGACAGTGTCCAGAAATGTGTGCGTACCCATTTGCACAGCCTAAGCCATTTCCGGGGAG 655
Query 656 CGGGTTTGTAGCCAGAGAGAAGATGAAACCGCCAAACGGAGAGGTGGGAATTGATGGGAT 715
|||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||
Sbjct 656 CGGGTTTGTAGCCAGAGAGAAGATGAAACCGCCAAATGGAGAGGTAGGAATCGATGGGAT 715
Query 716 GATCAGCGTGATAGCTCATGAGCTGGCGGAAGTGTCCAGTAACCCGATGTTGAACGGATG 775
|||||| |||||||||||||||||||| |||||||| |||||||||||||| ||||||||
Sbjct 716 GATCAGTGTGATAGCTCATGAGCTGGCAGAAGTGTCGAGTAACCCGATGTTAAACGGATG 775
Query 776 GTATGGAGGAGAGGATGCGACGGCACCCACAGAGATAGCGGATTTATGTTTGGGAGTGTA 835
||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 776 GTATGGAGGAGAGGACGCGACAGCACCGACAGAGATAGCGGATTTATGTTTGGGAGTGTA 835
Query 836 TGGATCAGGAGGAGGAGGAGGGTATATGGGAAGTGTGTATAAGGATAGGTGGAGGAATGT 895
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 836 TGGGTCAGGAGGAGGAGGAGGCTATATGGGAAGTGTGTATAAGGATAGGTGGAGGAATGT 895
Query 896 GTATAATGTGAAGGGCGTTAAAGGAAGAAAGTATCTGATTCAATGGGTTTGGGATCTTAA 955
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 896 GTATAATGTGAAGGGCGTTAAAGGAAGAAAGTATCTAATTCAATGGGTTTGGGATCTTAA 955
Query 956 TAGGAACAGATGCTTTGGACCAAACGCTATGAATTAGAGACAATCATGTTTGTTACCACT 1015
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 956 TAGGAACAGATGCTTTGGACCAAACGCTATGAATTAGAGACTATCATGTTTGTTACCTCT 1015
Query 1016 TT-CACCAAACCCTTGAGCTTGAAGCTTGAGGAAACAAACCTGTATATGGTTTATCTTTT 1074
|| ||||||| |||||||||||||||||| |||||| | |||||||||||||||||||
Sbjct 1016 TTTCACCAAAGCCTTGAGCTTGAAGCTTGGGGAAAC---C-TGTATATGGTTTATCTTTT 1071
Query 1075 CCTTACCTAGTCGACTCGACTCTTTGCATTTG-TCAGTTTAAGACTACAAAATCTAGGTA 1133
|||| ||||||||| | ||| |||||||| | ||||||||||||||||||||||||
Sbjct 1072 CCTTGCCTAGTCGA-T----TCTATGCATTTGATT-GTTTAAGACTACAAAATCTAGGTA 1125
Query 1134 TTATTAGCTGTCAAGATTCACTTGACAAAGTTTCTGAACC 1173
||| ||||||||||||||||||||||||||||||||||||
Sbjct 1126 TTACTAGCTGTCAAGATTCACTTGACAAAGTTTCTGAACC 1165
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57580025115
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5