BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482484
Length=1574
Score E
Sequences producing significant alignments: (Bits) Value
AT2G35190.1 | Symbols: NPSN11, ATNPSN11, NSPN11 | novel plant s... 2230 0.0
> AT2G35190.1 | Symbols: NPSN11, ATNPSN11, NSPN11 | novel plant
snare 11 | chr2:14830626-14833319 FORWARD LENGTH=1599
Length=1599
Score = 2230 bits (1207), Expect = 0.0
Identities = 1482/1607 (92%), Gaps = 50/1607 (3%)
Strand=Plus/Plus
Query 1 GGTTTTCGGTAACGCAGGTTTTCAAAATCTTCTCATTTTCGTCCCTTCGAGCCAAATCAA 60
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 GGTTTTCGGTAACGCAGTTTTTCAAAATC-TCTCATTTTCGTCCCTTCGAGCCAAATCAA 59
Query 61 TGGCaaaaaaaTAGCTTTTAGAAATCCCCACGACCaaaaaaaaaaaaTGTCCGAGAGAAA 120
|||||||||| |||||||||||| |||||| || |||||| |||||||||||||||||||
Sbjct 60 TGGCAAAAAATTAGCTTTTAGAATTCCCCAAGAACAAAAACAAAAAATGTCCGAGAGAAA 119
Query 121 TTATCG------AGaa-aaa-aaaaTCTTCGTGTA-GGG-GAGAGAGCTTGTGCCCAAGA 170
||| | | || ||| ||||||| ||||| ||| ||||||||| |||| | ||
Sbjct 120 TTAGGGAAAAACAAAACAAATAAAATCTGGGTGTAGGGGAGAGAGAGCTCGTGCTCGTGA 179
Query 171 TTTTGAAT-TCTGTCTCTTCGTTATCGATTTTGAACAACCACATTGTTCGTAGATCTGAA 229
||||| || ||| |||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 180 TTTTG-ATATCTATCTCTTCGTTATCGATTTTGAACATCCACATTGTTCTTAGATCTG-- 236
Query 230 AAAACAAGAAAAACTCACGGGTT-TGGTTCTTACGATTTGCTCGGTGATTTTGACATTAC 288
|| | || ||||| |||||||| | ||| ||||||||||||||| |||||||||| |
Sbjct 237 AAGA-AA-AAAAA--CACGGGTTCT-GTTATTACGATTTGCTCGGCGATTTTGACACCAG 291
Query 289 G-ATTCGATTGTTTT-GTT-GAGCTATTGATTCGATTCCGGATCCATACGGATCTAATCT 345
| ||| ||| |||| ||| ||| |||||||||| | ||||||| ||||||||||||
Sbjct 292 GCTTTCAATTCTTTTCGTTGGAG---GTGATTCGATTTCAGATCCAT-CGGATCTAATCT 347
Query 346 CGGCGAGTCGATTCGTGGTCGACA-TTTTCAAAAGCTGTTCGCGTGGATCTGAAGAAGAG 404
|||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||
Sbjct 348 CGGCGAGTCGATTCGTGGTCGACATTTTTCAAAAACTGCTCGCGTGGATCTGAAGAAGAG 407
Query 405 ACATTGTTGTC-TTTGTTATATC-GCACTGAAATTTTCTGGGAA-------AGA-ATGGA 454
||||||||||| |||| |||||| |||||||| ||||||||||| | | |||||
Sbjct 408 ACATTGTTGTCTTTTG-TATATCGGCACTGAATTTTTCTGGGAATCTGTGTAAAGATGGA 466
Query 455 TCCAATATCTGCGGTTAGCGAAGAGCTGGCTGAGATCGAAGGACAGATCAATGACATTTT 514
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 467 TCCAATATCAGCGGTTAGCGAAGAGCTGGCTGAGATCGAAGGACAAATCAATGACATCTT 526
Query 515 CCGTGCTTTATCAAATGGATTCCAGAAGCTGGAGAAGATCAAAGATGCTAATAGGCAGAG 574
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 527 CCGTGCTTTATCAAATGGATTCCAGAAGCTGGAGAAGATCAAAGATGCTAATAGGCAGAG 586
Query 575 TAGGCAGCTGGAAGAACTCACTGACAAAATGCGTGACTGTAAGAGCCTTATTAAAGATTT 634
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 587 TAGGCAGCTGGAAGAACTCACTGACAAAATGCGTGACTGTAAGAGCCTTATTAAAGATTT 646
Query 635 CGATAGGGAAATCAAGAGCTTGGAAAGCGGTAATGATGCCAACACTAACCGCATGTTGAA 694
||||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 647 CGATAGGGAAATCAAAAGCTTGGAAAGCGGTAATGATGCCAGCACTAACCGGATGTTGAA 706
Query 695 CGATAGACGACAATCTATGGTTAAGGAACTCAACTCATATGTTGCTCTTAAGAAGAAATA 754
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 707 CGATAGACGACAATCTATGGTTAAGGAACTCAACTCATATGTTGCTCTTAAGAAGAAATA 766
Query 755 CTCATCTAACCTAGCAAGCAATAACAAGCGAGTAGATCTTTTCGATGGACCCGGAGAAGA 814
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 767 CTCATCAAACCTAGCAAGCAATAACAAGCGAGTAGATCTTTTCGATGGACCTGGAGAAGA 826
Query 815 ACACATGGAAGAGAATGTCTTATTAGCTTCAAACATGTCCAATCAAGAGCTAATGGATAA 874
|||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 827 ACACATGGAAGAAAATGTCTTATTAGCTTCAAACATGTCCAATCAAGAGTTAATGGATAA 886
Query 875 AGGAAACTCAATGATGGATGACACAGATCAAGCCATTGAGAGAGGGAAAAAGATTGTTCA 934
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 887 AGGAAACTCAATGATGGATGACACAGATCAAGCTATTGAGAGAGGGAAAAAGATTGTACA 946
Query 935 GGAGACTATAAATGTGGGAACAGATACTTCAGCAGCTCTCAAGGCTCAGACCGAGCAAAT 994
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 947 AGAAACTATAAATGTGGGAACAGATACTTCAGCAGCTCTCAAGGCTCAGACCGAGCAAAT 1006
Query 995 GAGTAGAGTTGTCAATGAGCTCGATTCTATTCATTTCTCACTCAAGAAAGCCTCCAAGCT 1054
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1007 GAGTAGAGTTGTCAATGAGCTCGATTCTATTCATTTCTCACTCAAGAAAGCCTCCAAGCT 1066
Query 1055 GGTCAAGGAAATTGGTAGGCAGGTTGCCACTGACAAATGTATTATGGCATTTCTTTTCCT 1114
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1067 GGTCAAGGAAATTGGTAGGCAGGTTGCCACTGACAAATGTATTATGGCATTTCTTTTCCT 1126
Query 1115 TATCGTTATTGGTGTCATAGCAATCATCATCGTCAAGATTGTGAACCCAAACAACAAAGA 1174
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1127 TATCGTCATTGGTGTCATAGCAATCATCATCGTCAAGATTGTGAACCCAAACAACAAAGA 1186
Query 1175 CATCCGCAACATACC---TG-G--CCTAGCTCCACCAGCCATGAACCGACGTTTGCTCTG 1228
||| ||| ||||||| || | |||||||||||||||||||||| ||||| |||||||
Sbjct 1187 CATTCGCGACATACCGGGTGTGGGCCTAGCTCCACCAGCCATGAACAGACGTCTGCTCTG 1246
Query 1229 GAACCATTACTGAACAAACAATATCTCATTTTCAGGCCATTCAAAATACTGGTACGTCGA 1288
|||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||| |
Sbjct 1247 GAACCATTACTGAAAAAAAAATATCTCATTTTCACACCATTCAAAATACTGGTACGTTGC 1306
Query 1289 ACAtttttttGTCCCATACACTTCTTGGTCCTCCCCGAAGTCCATGTTGTTGTAGATGAA 1348
||| ||||||||||||||||| ||||| |||||||| |||| |||||||||||||||||
Sbjct 1307 ACACTTTTTTGTCCCATACACATCTTGATCCTCCCCTTAGTC-ATGTTGTTGTAGATGAA 1365
Query 1349 ACCGCCTCACTTGAGAAATTAACCAGTTTCTATTCACATGGCTCTTGGCGGCTGTGCCTT 1408
|||||||||||||||||| ||||||||||| |||||||||||||||||| |||| | ||
Sbjct 1366 ACCGCCTCACTTGAGAAAGTAACCAGTTTCGATTCACATGGCTCTTGGCTGCTGCACATT 1425
Query 1409 TGAGCAGTCACAGGAATCAAATTCCCCTTTCGTTAAAAGTCCCAGAATCAAAACCATCTT 1468
|||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||
Sbjct 1426 TGAGCAGTCACAGGAATCAAATTCCC-TTTCGTTAAAAA-CCCAGGATCAAAACCATCTT 1483
Query 1469 TTTTAGCTCATGTGTTTGTATAAGGATGACTCTTT-GTGTTATATCATATGTACGTGTAT 1527
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 1484 TTTTAGCTCATGTGTTTGTATAAGGATGACTCTTTTGTGTTCTATCATATGTACGTGTAT 1543
Query 1528 TTCTAAAACGTCGTCTCTGTTTCATGTTCTGGTAATAAAAACTTGTT 1574
|| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1544 TTTTAAAACGTCTTCTCTGTTTCATGTTCTGGTAATAAAAACTTGTT 1590
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77710443660
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5