BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482485
Length=737
Score E
Sequences producing significant alignments: (Bits) Value
AT2G35200.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 887 0.0
> AT2G35200.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G32690.1);
Has 36 Blast hits to 36 proteins in 8 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:14833848-14834624
FORWARD LENGTH=777
Length=777
Score = 887 bits (480), Expect = 0.0
Identities = 681/772 (88%), Gaps = 38/772 (5%)
Strand=Plus/Plus
Query 1 TCTCCTTCACAGCAAGCAACAGAGATTCAGAGACAAGAAAATGCAACGCGACAAAACTCA 60
||||||||||| |||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 1 TCTCCTTCACAACAAGCAACTGAGATTCAGAGACAAGAAAATGCAACGCGAGAAAACTCA 60
Query 61 AATGAATTTGCGTTTCGACGAAGGAGGAGGTAGCGTTTGGCAGAGATGCTCAAGACACGA 120
|| |||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 61 AACGAATTTGCGTTTGGACGAAGGAGGAGGCAGCGTTTGGCAGAAATGCTCAAGACACGA 120
Query 121 AGGCCGTTTTGTCTGCGTTGGAGGTGTTTGTCCTTACTGCCTCCACGAACGTCTCTCCTC 180
||| |||||||||||||||| |||||||||||||| |||||||||||||| ||||||||
Sbjct 121 AGGTCGTTTTGTCTGCGTTGCCGGTGTTTGTCCTTATTGCCTCCACGAACGCCTCTCCTC 180
Query 181 TCTCTGTCCCGATTGTGCTCACGATCTACCATGTTCGTGTACTCCTCGCGCCTCCGTGTC 240
||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||
Sbjct 181 TCTCTGTCCCGATTGTGCTCACGATCTTCCCTGTTCGTGTACTCCACGCGCCTCCGTGTC 240
Query 241 TTCCGGTGGAGGAGATGACGTTCCGTTCGCCGGTATCGGGTCAGTTGGCCGCGTTGCCAA 300
|||| |||||| || ||||||| |||||||| |||| ||||| |||||||| ||||||||
Sbjct 241 TTCCCGTGGAGAAGGTGACGTTTCGTTCGCCCGTATTGGGTCGGTTGGCCGTGTTGCCAA 300
Query 301 CTTGATTGAAAGCGAACCGGCGTTTCGGAGATCGACATCGCTTGCGGTTCCGTATTTCTG 360
|||||||||| ||||||||||||||||||| ||||||||| || ||| ||| ||||||||
Sbjct 301 CTTGATTGAATGCGAACCGGCGTTTCGGAGGTCGACATCGATTACGGGTCCTTATTTCTG 360
Query 361 GTCTTCTAAACCGGAGA-CGATATTAGAAACCGAGTCGGATCTCAAACCGGGCCGTGGAC 419
|||| |||||||||| | ||||||||||||| ||| |||||| |||||||| |||||||
Sbjct 361 GTCTGCTAAACCGGA-ACCGATATTAGAAACTGAGAAGGATCTTAAACCGGGTCGTGGAC 419
Query 420 GCTGGCTCTGGAGATTGTTGAGAGGAAAC--AG-AGAAGAGACGAAAATAAAGGCTGCTA 476
| ||||| ||||||||||| ||||||||| || ||||||||||||||||||||||||||
Sbjct 420 GTTGGCTATGGAGATTGTTCAGAGGAAACAGAGAAGAAGAGACGAAAATAAAGGCTGCTA 479
Query 477 CGGTTATGAAGAAGTCGAAATCCGTTGCCGGAGAAGAGCTATTTTCGCCGGCGCCGGTTG 536
|||||||||||||||||| |||||||||||||||| ||||| || ||| |||||| ||
Sbjct 480 AGGTTATGAAGAAGTCGAATTCCGTTGCCGGAGAAGTTCTATTCTCACCGACGCCGG-TG 538
Query 537 -CAAGCAAAGGAAATGGTTGGTACTTTCCAAGTCCGATTAAGGTTTTCAGACAATCAAGA 595
| || || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 ACTAGTAAGGGAAATGGTTGGTACTTTCCAAGTCCGATTAAGGTTTTCAGACAATCAAGA 598
Query 596 GTCTCCAAAATGATATTTCAACAAAGATCTCCATTGTACAGAGGTTAA-----A-TTTTA 649
|||||||| ||||| ||||||||||||||||||||||||||||||||| | |||||
Sbjct 599 GTCTCCAAGATGATTTTTCAACAAAGATCTCCATTGTACAGAGGTTAACTTTTAGTTTTA 658
Query 650 -----G--Gt-t-tt-t-ttttttt----c-ttttgttttACG-AAAACGTTGATTAATA 692
| || | || | ||||||| | |||||||||||| |||| ||||||||||
Sbjct 659 TTCTAGTCGTGTGTTCTGTTTTTTTTTTTCCTTTTGTTTTACGTAAAA-GTTGATTAATG 717
Query 693 TTT-CTTTTCATAATGAAAATGCAGAT----C--TTATACATAAAAATCGGA 737
||| |||||||||||||||||| ||| | ||||||||||||||||||
Sbjct 718 TTTTCTTTTCATAATGAAAATGTTGATGTTACACTTATACATAAAAATCGGA 769
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35766712664
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5