BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482489
Length=2038
Score E
Sequences producing significant alignments: (Bits) Value
AT2G35230.1 | Symbols: IKU1 | VQ motif-containing protein | chr... 2662 0.0
> AT2G35230.1 | Symbols: IKU1 | VQ motif-containing protein | chr2:14842293-14844434
FORWARD LENGTH=2142
Length=2142
Score = 2662 bits (1441), Expect = 0.0
Identities = 1817/1989 (91%), Gaps = 64/1989 (3%)
Strand=Plus/Plus
Query 1 GGAATCTAGTTTCGTCTCATTTCTTCTTCGTTGACACAATTAGGGTTCACTTCAATTCTC 60
||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GGAATCTTGTTTCGTCTCCTTTCTTCTTCGTTGACACAATTAGGGTTCACTTCAATTCTC 60
Query 61 TTCTCTGGATCGTATTACTTGGGGAAATTTAAAGATCTGG--CT---CT-TT-TGGGTTA 113
|||| ||||||||||||||||||||||||||||||||||| || || || |||||||
Sbjct 61 TTCTTTGGATCGTATTACTTGGGGAAATTTAAAGATCTGGCTCTGGGCTCTTCTGGGTTA 120
Query 114 GCTCGGATCCAAATTCTCATGTGAAAGACCTGAACTTTTGCTCCATCTTAATCG-ttttt 172
||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 121 GCTAGGATCCAAATTCTCAGGTGAAAGACCTGAACTTTTGCTCCATCTTAATCGCTTTTT 180
Query 173 ttCTTCTTCT-TGGGCTGGTCTGGT-GGATATACAGAGAATTGATAGTGTTTGAATTGTA 230
|| ||||||| | |||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 181 TT-TTCTTCTCT-GGCTGGTCTGGTAATATATACAGAGAATTGATAGTGTAAGAATTGTA 238
Query 231 ATTCTGCTTTAGTG-TTTGATCGAGTTTCTGAGCTTAGTATCGTGGGGTTTTGGGTTCAG 289
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 239 ATTCTGCTTTAGTGTTTTGATCGAGTTTCTGAGCTTAGTATCGTGGGTTTTTGGGTTCAG 298
Query 290 GGGAGGATACAGTAGCTTAAGAACTGAGGATCTAGTTTCTTAGGCTAGGCACTTTCAGCT 349
||||||||| |||||||||||||||||||||||| || |||| |||||||||||||||||
Sbjct 299 GGGAGGATAAAGTAGCTTAAGAACTGAGGATCTACTTACTTAAGCTAGGCACTTTCAGCT 358
Query 350 GAATTTTGATTCGTTTCTGGACTCATTAGTTTGGT-A--A-T-G-ATTAG----T-TTT- 397
||||||||||||||||||||||||||||||| ||| | | | | |||| | |||
Sbjct 359 GAATTTTGATTCGTTTCTGGACTCATTAGTTGGGTAATGATTAGTTTTAGTTTCTCTTTG 418
Query 398 G-G-ATA-TTTGTTGGATTAGGTAACTACTAGAC---AG------A--GGG-ATTAGCT- 441
| | ||| |||||| |||||||||| |||||||| || | ||| || | |
Sbjct 419 GTGAATATTTTGTTTGATTAGGTAATTACTAGACAGTAGTTTCTCATTGGGTTTTGGTTG 478
Query 442 A-CCA-GA-GA-T-TTGGG---T-TTTGGCTGATT---TAGGTTGGTTGG-TTTTTGGAT 488
| | || | | ||||| | ||||| || || | ||||||||| ||||| |||
Sbjct 479 ATTTAGGATAATTCTTGGGTCATATTTGG-TG-TTGGGTCTGTTGGTTGGTTTTTTAGAT 536
Query 489 TGGTAGTGAGG-GTTTACCAATA-GCATATGGATTTTTGTGGAGATGGATAGGCCTAGAC 546
||||||||||| |||| | ||| | || |||||||||||||||||||||||||||||||
Sbjct 537 TGGTAGTGAGGTTTTTA-CTATAGGTAT-TGGATTTTTGTGGAGATGGATAGGCCTAGAC 594
Query 547 AAAATGATCATTTGGGTGTGAATAAGATTGGGAGAAATATCAGAAAGAGTCCTCTGCATC 606
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||
Sbjct 595 AAAATGATCATTTGGGTGTGAATAGGATTGGGAAAAATATCAGAAAGAGTCCTCTTCATC 654
Query 607 AACCGACTTTCGCTGCCAATGCTAGCAACGTTGCCGGGGCAAGGCCTCAGACACAGCCTC 666
|| ||||||||||||||| | ||||||||| ||||| |||||| ||| ||||||||||
Sbjct 655 AATCGACTTTCGCTGCCAGTACTAGCAACGGTGCCGCTCCAAGGCTTCAAACACAGCCTC 714
Query 667 AGGTTTATAACATAAGCAAGAACGACTTTAGAAGTATTGTTCAGCAGCTAACGGGTTCTC 726
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 715 AGGTTTATAACATAAGCAAGAACGACTTTAGAAGTATTGTTCAGCAGCTAACGGGTTCTC 774
Query 727 CATCACGTGAATGCCTTCCTCGGCCTCCTCAAAACAACCCGCCAAAGCCTCAGAATACAC 786
||||||||||| ||||||||||||||||||| |||||| ||| || ||||||||||||||
Sbjct 775 CATCACGTGAAAGCCTTCCTCGGCCTCCTCAGAACAACTCGCTAAGGCCTCAGAATACAC 834
Query 787 GGTTGCAGCGGATCAGACCATCCCCCTTAACGCAGATAAACCGGCCTGCGGTTCCTCTCC 846
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 835 GGTTGCAGCGGATCAGACCATCCCCCTTAACGCAGTTAAACCGGCCTGCGGTTCCTCTCC 894
Query 847 CTACCATGGCTCCTCCACAATCTCATCCTCAGTTTGTTAGACAGCATCCACCCCAGCCGC 906
|| |||||||||| ||||| |||||||||||||||| |||||||| ||||| |||||| |
Sbjct 895 CTTCCATGGCTCCGCCACAGTCTCATCCTCAGTTTGCTAGACAGCCTCCACACCAGCCAC 954
Query 907 CTTTCCCACAAAGCACACAACAACCATTGATGGGTCACAGGGACCAGTTTTGGTCTAATA 966
|||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 955 CTTTCCCACAAACCACACAACAACCAATGATGGGTCACAGGGACCAGTTTTGGTCTAATA 1014
Query 967 CAGCTGAGTCTCCCGTCTCAGAGTATATGCGTTATCTTCAAAGTTCACTTGGAGATTCAG 1026
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1015 CAGCTGAGTCTCCCGTCTCAGAGTATATGCGTTATCTTCAAAGTTCACTTGGAGATTCAG 1074
Query 1027 GACCCAATGGTAACCAAATGCAGCCAGGTCATGAGCAGCGGCCCTATATCCCAGGTCATG 1086
||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1075 GACCCAATGCTAACCAAATGCAGCCAGGTCATGAGCAGCGGCCTTATATCCCAGGTCATG 1134
Query 1087 AGCAGCGGCCATATATCCCAGGTCATGAGCAGCAGCCATATATCCCAGGTCTTGAGCAGC 1146
|||| ||||||||| | |||||| ||||||||||||||||||| |||||| ||||||||
Sbjct 1135 AGCAACGGCCATATGTGCCAGGTAATGAGCAGCAGCCATATATGCCAGGTAATGAGCAGC 1194
Query 1147 GGCCATATATGCCAGGTCATGAGCAGCGGCCATATATCCCAGGTCA-TGAGCAGCCTCAG 1205
|||||||||| |||||||||||||||||| ||||||| |||| ||| | ||| |||||
Sbjct 1195 GGCCATATATCCCAGGTCATGAGCAGCGGTCATATATGCCAGCTCAATCT-CAGTCTCAG 1253
Query 1206 TCTCAGTCTCAGCCTCAACCTCAACCTCAGCAACATATGATGCCTGGATCGCAACCTCGA 1265
||||| |||| |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1254 TCTCAACCTCAACCTCAACCTCAACCTCAGCAACATATGATGCCTGGACCGCAACCTCGA 1313
Query 1266 ATGAATATGCAGGGCCCTCTTCAATCTAACCAGTATCTACCACCACCCGGGTTAGTTCCT 1325
||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1314 ATGAACATGCAGGGCCCTCTTCAACCTAACCAGTATCTACCACCACCCGGGTTAGTTCCT 1373
Query 1326 AGCCCAGTGCCTCGTAATCTTCCTTCCCCTCGGTTCAATGCTCCTGTACCTGTCACGCCT 1385
||||||||||||| |||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 1374 AGCCCAGTGCCTCATAATCTTCCTTCTCCTCGGTTCAATGCTCCTGTACCTGTGACGCCT 1433
Query 1386 ACTCAGCCCTCTCCCATGTTCAATCAGATGTATGGTGGATTTGCTTCTCCTCGATATAAC 1445
|||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 1434 ACTCAGCCCTCTCCCATGTTCAGTCAGATGTATGGTGGATTTCCTTCTCCTCGATATAAC 1493
Query 1446 GGTTTTGGACCACTGCAATCACCTACATCCCAATTTCTTCTACCATCTCCTACCGGTTAC 1505
||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 1494 GGTTTTGGACCACTGCAGTCACCTACATCCCAATTTCTTCAACCATCTCCTACCGGTTAC 1553
Query 1506 CCGAATATGTTCTCTCCGAGATCACCTTACCCATTGCTATCACCAGGAGTTCAGTATCCT 1565
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 1554 CCGAATATGTTCTCTCCGAGATCGCCTTACCCATTGCTGTCACCAGGAGTTCAGTATCCT 1613
Query 1566 CAACCACTTACCCCAAACTTCTCATTTTCACAAATTGCTCAACAAGGAAGTCTTGGACCC 1625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1614 CAACCACTTACCCCAAACTTCTCATTTTCACAAATTGCTCAACAAGGAAGTCTTGGACCC 1673
Query 1626 GGTGCAGGTCCAGGTCAAGGTCCTCCTCAGCCTCCTCCTTCGCCAGGGCTCATGTTCCCG 1685
|||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1674 GGTGCAGGTCCAAGTCAAGGTCCTCCTCAGCCTCCTCCTTCTCCAGGGCTCATGTTCCCG 1733
Query 1686 TTATCTCCATCTGGGTTCTTCCCCATCCCAAGTCCAAGATGGAGTGATTACTAGGTGCTC 1745
||||||||||| |||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 1734 TTATCTCCATCCGGGTTCTTCCCCATGCCAAGTCCAAGATGGAATGATTACTAGGTGCTC 1793
Query 1746 TCTTTTCTATCTATCCGATTTATTGAATTGAGTAAATCGCAGTATGGTTATTCAAGTCTC 1805
| |||||| || ||| |||| ||| |||| ||||||||| | |||| ||||||| || ||
Sbjct 1794 T-TTTTCTCTCCATCAGATTCATTAAATTAAGTAAATCGGATTATGTTTATTCAGGTTTC 1852
Query 1806 CTTAGGTTAGTCTATAC-TTTGAAAGAAGCTTAAAACTTCAGAGCCTACAGTGGAATAGA 1864
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1853 CTTAGGTTAGTCTGTACCTTTGAAAGAAGCTTAAAACTTCAGAGCCTACAGTGGAATAGA 1912
Query 1865 CGCAGCAGAATAGATGCGTAAAACACTAAAGGAGCTTTTAGAAGCAAGGAAGATTTATAG 1924
|||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 1913 CGCAGCAGAATAGATGCGTAAAACACTAAAGGAGCTTTTAGAAGAAAGAAAGATTTATAG 1972
Query 1925 GTGTTTTTT 1933
| |||||||
Sbjct 1973 GGGTTTTTT 1981
Score = 150 bits (81), Expect = 4e-35
Identities = 101/110 (92%), Gaps = 4/110 (4%)
Strand=Plus/Plus
Query 1932 TTGGGACGATGATGATTACCTTTGTTTTTGTTTATCACAAAATTAGTTTTATCTTTGCGT 1991
|||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 2018 TTGGGATGATGATGATTACCTTTGTTTTTGTTTATCACAAACTTAGTTTTATCTTTGCTT 2077
Query 1992 A-ATTTGTACACAGACTACAGATGAACTC--TTCAATTTATATGATTTTT 2038
| ||| ||||||| |||||||| |||||| |||||||||||||||||||
Sbjct 2078 ACATT-GTACACATACTACAGACGAACTCAGTTCAATTTATATGATTTTT 2126
Score = 115 bits (62), Expect = 2e-24
Identities = 78/86 (91%), Gaps = 0/86 (0%)
Strand=Plus/Plus
Query 1049 GCCAGGTCATGAGCAGCGGCCCTATATCCCAGGTCATGAGCAGCGGCCATATATCCCAGG 1108
||||||| ||||||||| ||| ||||| |||||| |||||||||||||||||||||||||
Sbjct 1151 GCCAGGTAATGAGCAGCAGCCATATATGCCAGGTAATGAGCAGCGGCCATATATCCCAGG 1210
Query 1109 TCATGAGCAGCAGCCATATATCCCAG 1134
||||||||||| | ||||||| ||||
Sbjct 1211 TCATGAGCAGCGGTCATATATGCCAG 1236
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 101003496540
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5