BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482492
Length=864
Score E
Sequences producing significant alignments: (Bits) Value
AT2G35270.1 | Symbols: GIK | Predicted AT-hook DNA-binding fami... 1325 0.0
> AT2G35270.1 | Symbols: GIK | Predicted AT-hook DNA-binding family
protein | chr2:14857021-14857878 FORWARD LENGTH=858
Length=858
Score = 1325 bits (717), Expect = 0.0
Identities = 817/865 (94%), Gaps = 8/865 (1%)
Strand=Plus/Plus
Query 1 ATGGCTGGTCTCGATCTAGGCACAACTTCTCGCTACGTCCACAACGTTGATGGTGGCGGC 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1 ATGGCTGGTCTCGATCTAGGCACAACTTCTCGCTACGTCCACAACGTCGATGGTGGCGGC 60
Query 61 GGCGGCCAGTTCACCACCGACAACCACCACGAGGATGACGGTGGCGCTGGAGGAAACCAT 120
||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 61 GGCGGACAGTTCACCACCGACAACCACCACGAAGATGACGGTGGCGCTGGAGGAAACCAC 120
Query 121 CATCACCATCATAATAATCACAATCACCATCAAGGTTTAGATTTAATAGCTTCTAATGAT 180
||||| || ||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 121 CATCATCACCATCATAATCATAATCACCATCAAGGTTTAGATTTAATAGCTTCTAATGAT 180
Query 181 AACTCTGGACTAGGCGGCGGTGGAGGTGG-GGGAAGCGGTGACCTCGTCATGCGCCGGCC 239
|||||||||||||||||||||||||| || |||| ||||||||||||||||||| |||||
Sbjct 181 AACTCTGGACTAGGCGGCGGTGGAGGAGGAGGGA-GCGGTGACCTCGTCATGCGTCGGCC 239
Query 240 ACGTGGCCGTCCAGCTGGATCAAAGAACAAACCGAAGCCGCCGGTGATCGTCACGCGCGA 299
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 240 ACGTGGCCGTCCAGCTGGATCGAAGAACAAACCGAAGCCGCCGGTGATTGTCACGCGCGA 299
Query 300 GAGCGCAAACACTCTTAGGGCTCACATTCTTGAAGTCGGAAGTGGCTGCGACGTTTTCGA 359
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 300 GAGCGCAAACACTCTTAGGGCTCACATTCTTGAAGTTGGAAGTGGCTGCGACGTTTTCGA 359
Query 360 GTGTATCTCCACTTACGCTCGCCGGAGACAGCGAGGAATTTGCGTTTTGTCCGGAACGGG 419
|||||||||||||||||||| ||||||||||| || ||||||||||| ||||| |||||
Sbjct 360 ATGTATCTCCACTTACGCTCGTCGGAGACAGCGCGGGATTTGCGTTTTATCCGGGACGGG 419
Query 420 AACCGTCACTAACGTCAGCATCCGTCAGCCTACGGCGGCCGGAGCTGTTGTGACTCTGCG 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 AACCGTCACTAACGTCAGCATCCGTCAGCCTACGGCGGCCGGAGCTGTTGTGACTCTGCG 479
Query 480 CGGAACTTTTGAGATTCTTTCCCTCTCCGGATCTTTTCTCCCGCCGCCTGCTCCTCCAGG 539
|| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 480 GGGTACTTTTGAGATTCTTTCCCTCTCCGGATCTTTTCTTCCGCCACCTGCTCCTCCAGG 539
Query 540 GGCGACCAGCTTGACGATATTTCTCGCCGGAGCTCAGGGACAGGTCGTCGGAGGCAACGT 599
|||||| |||||||||||||| ||||| |||||||| ||||||||||||||||| |||||
Sbjct 540 GGCGACTAGCTTGACGATATTCCTCGCTGGAGCTCAAGGACAGGTCGTCGGAGGTAACGT 599
Query 600 AGTTGGTGAGTTGATGGCGGCGGGGCCGGTAATGGTCATGGCGGCGTCTTTTACAAACGT 659
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 600 AGTTGGTGAGTTAATGGCGGCGGGGCCGGTAATGGTCATGGCAGCGTCTTTTACAAACGT 659
Query 660 GGCTTACGAAAGGTTGCCTTTGGACGAGCATGAGGAGCACTTGCAGGTTCAAAGTGGTGG 719
||||||||||||||||||||||||||||||||||||||||||||| || |||| ||
Sbjct 660 GGCTTACGAAAGGTTGCCTTTGGACGAGCATGAGGAGCACTTGCA-----AA-GTGGCGG 713
Query 720 CGGCGGAGGCGGGGGGAATATGTACTCGGAAGCAACTGGCGGTGGCGGAGGATTGCCGTT 779
||||||||| || |||||||||||||||||||| ||||||||||||||||| ||||| ||
Sbjct 714 CGGCGGAGGTGGAGGGAATATGTACTCGGAAGCCACTGGCGGTGGCGGAGGGTTGCCTTT 773
Query 780 CTTTAATTTGCCGATGAGTATGCCCCAGATGGGAGTCGAAAGTTGGCCGGGGAATCACGC 839
|||||||||||||||||||||||| ||||| ||||| |||||||||| ||||||||||||
Sbjct 774 CTTTAATTTGCCGATGAGTATGCCTCAGATTGGAGTTGAAAGTTGGCAGGGGAATCACGC 833
Query 840 CGGCGCCGGTAGGGCTCCGTTTTAG 864
|||||||||||||||||||||||||
Sbjct 834 CGGCGCCGGTAGGGCTCCGTTTTAG 858
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42146449333
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5