BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg482493

Length=481
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G35290.1 | Symbols:  | unknown protein; Has 39 Blast hits to...   691    0.0  


> AT2G35290.1 | Symbols:  | unknown protein; Has 39 Blast hits 
to 39 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr2:14861412-14862029 REVERSE 
LENGTH=618
Length=618

 Score =  691 bits (374),  Expect = 0.0
 Identities = 454/491 (92%), Gaps = 12/491 (2%)
 Strand=Plus/Plus

Query  1    CTTCTCTCAAATGGGTTGTTTGATTTCTCCTGTCATGAAACTCCGTCGTCTCTCCTCAGC  60
            ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct  20   CTTCTCTCAAATGGGTTGTCTGATTTCTCCTGTAATGAAACTCCGTCGTCTCTCCTCAGC  79

Query  61   CGACTCACGGCGGTTTGCATACCGGAATCTCACCGAAAATATGGAAGATCCAGTCATAAG  120
            |||||| ||||| |||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct  80   CGACTCGCGGCGATTTGCATACCGGAATCTCGCCGAGAATATGGAAGATCCAGTCATAAG  139

Query  121  GGTGGTGGTAGGGAAGGAGAAGAAGGAGTTCATGGTCGAACCGTATGTACTCGAAGAGTA  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  140  GGTGGTGGTAGGGAAGGAGAAGAAGGAGTTCATGGTCGAACCGTATGTACTCGAAGAGTA  199

Query  181  CCCTTTTAGAGTCTTGATAGGTTCAGCTAAGGATCGTGCCAAGAACCGGTTAAACCGGAC  240
            ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  200  CCCGTTCAGAGTCTTGATAGGTTCAGCTAAGGATCGTGCCAAGAACCGGTTAAACCGGAC  259

Query  241  CGGTAGAGTGGTGTGGCTTGATCATGTCGACTCGATCTTGTTTGAGCACTTGCTGTGGCT  300
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  260  CGGTAGAGTGGTGTGGCTTGATCATGTCGACTCGATCTTATTTGAGCACTTGCTGTGGCT  319

Query  301  TCTTCGGAACGATGCCTCTACGTTTTCGGATTTGGATGTTGTCGAGATCATTGATTTCTA  360
            |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct  320  TCTTCGGAACGATGCCTCTACGTTTTCGGATTTGGATGTTCTCGAGATCATTGAATTCTA  379

Query  361  TGCTCAAGATTGTTAGGGGA-GAAATGGAATAACAGTGTG-TT---C--TTTTAGTGA--  411
            |||||||||||||||||| | |||||||| |||||||||| ||   |  ||||| |    
Sbjct  380  TGCTCAAGATTGTTAGGGAAAGAAATGGATTAACAGTGTGCTTTTACAGTTTTACTTTTC  439

Query  412  AG--AAGATATGAGCCATTCATATAACtttttttttttGGGAGTAATTGTCGGCTAGGTT  469
            ||  ||||||||| ||||||| | |||| |||||  | | ||| ||||||||||||| ||
Sbjct  440  AGTGAAGATATGATCCATTCAAAAAACTGTTTTTACT-GCGAGCAATTGTCGGCTAGATT  498

Query  470  TAATTGGGCTA  480
            |||||||||||
Sbjct  499  TAATTGGGCTA  509



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22906771032


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5