BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg482494

Length=473
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G35300.1 | Symbols: LEA18 | Late embryogenesis abundant prot...   765    0.0  


> AT2G35300.1 | Symbols: LEA18 | Late embryogenesis abundant protein, 
group 1 protein | chr2:14862901-14863387 REVERSE LENGTH=487
Length=487

 Score =  765 bits (414),  Expect = 0.0
 Identities = 453/472 (96%), Gaps = 1/472 (0%)
 Strand=Plus/Plus

Query  2    aagaagaagaagaaagaagaTGCAGTCGGCGAAGGAAAAGATCAGTGACATGGCCAGTAC  61
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  10   AAGAAGAAGAAGAAAGAAGATGCAGTCGGCGAAGGAAAAGATCAGTGACATGGCCAGTAC  69

Query  62   GGCCAAGGAGAAGCTCCACATCGGCGGCGCAAAGGCTCAAGGTCATGCAGAGAAGACGAT  121
            |||||||||||| ||| ||||||| ||||||||||| ||||||||||| |||||||||||
Sbjct  70   GGCCAAGGAGAAACTCAACATCGGTGGCGCAAAGGCACAAGGTCATGCGGAGAAGACGAT  129

Query  122  GGCGAGGACCAAAAAAGAGAAGAAGTTGGCCCAAGAGCGAGAGAAGTCTAAGGAGGCGCA  181
            ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  130  GGCAAGGACCAAAAAAGAGAAGAAGTTGGCCCAAGAGCGAGAGAAGTCTAAGGAGGCGCA  189

Query  182  GGCCAAGGCTGACCTCCATCAATCCAAGGCTGAGCATGCTGCAGACGCTCAGGTTCACGG  241
            |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  190  GGCCAAAGCTGACCTCCATCAATCCAAGGCTGAGCATGCTGCGGACGCTCAGGTTCACGG  249

Query  242  CCACCGTCTTCCCGGTCACTCCACCTACCCTACCCGAGCCACCGGAGCTAATTACCCGCC  301
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  250  CCACCATCTTCCCGGTCACTCCACCTACCCTACCCGAGCCACCGGAGCTAATTACCCGCC  309

Query  302  GGGACAAATCTAAAACTAGCTCTATAGCTATATTAAGATTAGCCGTCTTGTTTACCAATA  361
            |||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct  310  GGGACAGATCTAAAACTAGCTCTATAGCTATATTAAGATTAGCCGCCTTGTTTAACAATA  369

Query  362  TAATATGTACGtttttttCTAATATAAGATTAGCAGTCTTGAAATTTTCTTGGTTAGTTT  421
            | ||||||||||||||| |||||||||||| ||||||| |||||||||||||||||||||
Sbjct  370  TGATATGTACGTTTTTT-CTAATATAAGATCAGCAGTCATGAAATTTTCTTGGTTAGTTT  428

Query  422  CTTTTGCTATTTTATGCATAAAAAATAATGTAATCTTGCAGAAATAAACGTA  473
            |||||| || |||||||||||| |||||||||||||||||||||||||||||
Sbjct  429  CTTTTGATAGTTTATGCATAAACAATAATGTAATCTTGCAGAAATAAACGTA  480



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22504897856


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5