BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482495
Length=1126
Score E
Sequences producing significant alignments: (Bits) Value
AT2G35310.1 | Symbols: | Transcriptional factor B3 family prot... 1537 0.0
> AT2G35310.1 | Symbols: | Transcriptional factor B3 family protein
| chr2:14864855-14866598 FORWARD LENGTH=1149
Length=1149
Score = 1537 bits (832), Expect = 0.0
Identities = 1024/1115 (92%), Gaps = 19/1115 (2%)
Strand=Plus/Plus
Query 22 GAGAGAGTAGAGAGTGTGTGGAAAGAAACTAGGAAGTTGAAGGAAAAAACGAGAAAGATG 81
|||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||||
Sbjct 32 GAGAGAGTAGAGAGTGTGTGGAGAGATACTAGGAAGTTGAAGGAAAAAGCGAGAAAGATG 91
Query 82 GCTAGAAACAGTGACTATGATATGTGCAAAGAAGAGCGGAAGAGAGAGAGCTTCTTCAAG 141
||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 92 GCTAGAAACAGTGACAATGATATGTGCAAAGAAGAACGGAAGAGAGAGAGCTTCTTCAAG 151
Query 142 GTTCTACAAAGAGTTGATTTTTCTTCCGAAAACTTGAGAGCACTTCCTTACGACTTTGTG 201
|||||||| ||||||||| ||||||| || ||| ||||||||||||||||||||||||||
Sbjct 152 GTTCTACAGAGAGTTGATATTTCTTCTGAGAACATGAGAGCACTTCCTTACGACTTTGTG 211
Query 202 AGAAGCTTCTCCAACAATGAGCTCTC-CGGTAAGATGAAGATAAAAGCGCGATGGGGAAG 260
|||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||
Sbjct 212 AGAAGCTTCTCCAACAATGAGCTCTCTC-GTAAGATGAAGATAAAAGCTCGATGGGGAAG 270
Query 261 TTCTTGGGAAGTAGAAATCTGCAAGAATCCCAGATTCTATTTCATGGAGAAATCCGGATG 320
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 271 TTCTTGGGAAGTAGAAATCTGCAAAAATCCAAGATTCTATTTCATGGAGAAATCCGGATG 330
Query 321 GGTGAAGTTTGTGAGGGACAATGCCTTGGGAGACAATGAGTTTCTTACCTTCACTCACAA 380
|| |||||||||||| |||||||||||||||| || ||||||||||||||||||||||||
Sbjct 331 GGAGAAGTTTGTGAGTGACAATGCCTTGGGAGCCAGTGAGTTTCTTACCTTCACTCACAA 390
Query 381 AGGAAAAATGCGTTTTACAGTGAACATCTTCAAGCAAGATGGCAAGGAGATGCTTCAGCC 440
||| || ||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 391 AGGGAATATGCGTTTTACAGTGAACATCTTCATGCAAGATGGCAAGGAGATGCTACAGCC 450
Query 441 TCCACAATCCATGGCCTCCATGGCTTCTTCTAGGCGCCGGCGCACTAAAACAGAACAAGG 500
||||||||||||| ||| |||||||||||||| | | | | | |||||| |||||||||
Sbjct 451 TCCACAATCCATGTCCTTCATGGCTTCTTCTA-G-G-C--CAC-CTAAAAGAGAACAAGG 504
Query 501 AATATCTTATCTTGCCACGACAATAACAGCTGAATCTAATGGAGGAGAAAACTACACAAG 560
|||| ||| |||||||||||||||| ||||||||||||||||||||| ||||||| |||
Sbjct 505 AATACCTTCTCTTGCCACGACAATAGCAGCTGAATCTAATGGAGGAGGGAACTACAAAAG 564
Query 561 GAAGCTCAACTTTGAGAAGAAGAAAGCTGCGGAATCCCAAAATTCCAAGAGGACCGAGAA 620
||||||||||||||||||||||||||||| |||||| || ||||||||||||||||| ||
Sbjct 565 GAAGCTCAACTTTGAGAAGAAGAAAGCTGAGGAATCTCACAATTCCAAGAGGACCGATAA 624
Query 621 AGTCTTTAGTGTCCGA-AGGGATTCTGCAGGTGCCTCTTCATCTTCTGTTGCAGAATTCA 679
|||||||||||||| | || || ||||||||||||||||||||||||||||||||||||
Sbjct 625 AGTCTTTAGTGTCC-AGAGAGAATCTGCAGGTGCCTCTTCATCTTCTGTTGCAGAATTCT 683
Query 680 CCACCTTCATCAAGAAATCATACCTTATCTTCATGAGGATCCCCAAATCTGTTCAAAGTA 739
||| || ||||| ||||||||||| |||| |||| || |||| ||||||||||||||||
Sbjct 684 CCATGTTTATCAAAAAATCATACCTCATCTACATGTGGTTCCCGAAATCTGTTCAAAGTA 743
Query 740 TTCATATGCCGATGCAGAGAACGATTTTCAAGATACATCTCCCAAATATGAAGAAGTCAT 799
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 744 TTCATATGCCGAAGCAGAGAACGATTTTCAAGATACATCACCCAAATATGAAGAAGTCAT 803
Query 800 GGAATGTGGTTTACTTGGTGGCAGATA-GGGGTGCAAGCTTCTCTGGTGGATGGAAACGT 858
|||||||||||||| ||||| ||| | | | |||||||||||| |||||||||| ||
Sbjct 804 GGAATGTGGTTTACGTGGTGTCAGGGACGAAAT-CAAGCTTCTCTGCTGGATGGAAAGGT 862
Query 859 TTGGCTCAAGAGTATCCTGTAGCAGTTGGAGACACTTGCAAGTTTTCATTCATCAAACAA 918
||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 863 TTGGCTCAAGAATATCCTCTAGCAGTTGGAGACACTTGCAAGTTTTCATTCATCAAACAA 922
Query 919 CACGAGCTGATTCTCTTTGTCTCAAAACCCTAAGAGGAG-CT-ACTC---ACTAGTGATG 973
||||||||||||||||||||||||||||||||||||||| || ||| | ||||||||
Sbjct 923 CACGAGCTGATTCTCTTTGTCTCAAAACCCTAAGAGGAGACTCACTAGTGAATAGTGATG 982
Query 974 ATGGATGTGAAGGTGTCAACTGAGAAAAAGACTGTTTATCAGTGTTGTCTTAACTTTTAG 1033
||| ||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||
Sbjct 983 ATGAATGTGAAGGTGTCTACTGAGTAAAAGACTGTTTATCAGTGTTGTCTTAAGTTTTAG 1042
Query 1034 TTTTATGTTATGACTTAGTTCGGTTTAAA-TTCAGAATGTCTATGGGGCGGATATATGTA 1092
|||||||||||||||||||||||||| || |||||||||||||| || |||| ||||||
Sbjct 1043 TTTTATGTTATGACTTAGTTCGGTTTTAAGTTCAGAATGTCTATCGGATGGATCTATGTA 1102
Query 1093 GCTTGATATGTTTGG-ACCAATTTTAATATGTTGT 1126
|||||||||| |||| |||||||||||||||||||
Sbjct 1103 GCTTGATATGATTGGGACCAATTTTAATATGTTGT 1137
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55220599500
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5