BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482498
Length=2610
Score E
Sequences producing significant alignments: (Bits) Value
AT2G35350.1 | Symbols: PLL1 | poltergeist like 1 | chr2:1488103... 3954 0.0
> AT2G35350.1 | Symbols: PLL1 | poltergeist like 1 | chr2:14881039-14884116
REVERSE LENGTH=2673
Length=2673
Score = 3954 bits (2141), Expect = 0.0
Identities = 2490/2652 (94%), Gaps = 49/2652 (2%)
Strand=Plus/Plus
Query 1 ATGGGAAGTGGATTCTCCTCCGTCTTACCTTGCTTCAATCAAGGCCACCGTAACCGCCGT 60
||||||||||||||||||||| | |||||||||||||||||||| |||||||||||||||
Sbjct 1 ATGGGAAGTGGATTCTCCTCCTTGTTACCTTGCTTCAATCAAGGTCACCGTAACCGCCGT 60
Query 61 CGTCACTCATCGACGGCGAATCCGACTCATTCCGATCCGATTGAGTCTCTCTGTGAGCCG 120
|||||||| ||| |||||||||| |||||||||||| |||||| ||| || ||||||||
Sbjct 61 CGTCACTCCTCGGCGGCGAATCCCTCTCATTCCGATCTGATTGACTCTTTCCGTGAGCCG 120
Query 121 TTGGATGAGACTTTAGGCCATTCTTACTGTTACGTT-C--CTTCTTCTAATCGCTTCATT 177
|||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 121 TTGGATGAGACTTTAGGCCATTCTTACTGTTACGTTCCTTCTTCTTCTAATCGCTTCATT 180
Query 178 TCTCCTTTTCCTTCTGATCGATTCGTTTCTCCTTCTGGTTCTTTCCGGTTATCTCCTCCG 237
|||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 181 TCTCCTTTTCCTTCCGATCGATTCGTTTCTCCTACTGCTTCTTTCCGGTTATCTCCTCCG 240
Query 238 CATGAACCGGGTCGGATCCGAGGTTCCGGATCATCCGAGCAGCTTCACACCGGGTTTAGA 297
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CATGAACCGGGTCGAATCCGAGGTTCCGGATCATCCGAGCAGCTTCACACCGGGTTTAGA 300
Query 298 GCGATTTCTGGTGCTTCTGTTAGCGCCAACACTTCGAATTCCAAAACTGTCCTCCAGCTT 357
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 301 GCGATTTCTGGTGCTTCTGTTAGCGCCAACACTTCCAATTCCAAAACTGTCCTTCAGCTT 360
Query 358 GAAGATATTTACGACGATGCCACTGAGAGCAGCTTCGGCGGCGGCGTTCGGAGCAGTGTT 417
|||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||
Sbjct 361 GAAGATATTTACGACGATGCCACTGAGAGCAGTTTCGGCGGCGGCGTTAGGAGGAGTGTG 420
Query 418 GTGAATGCCAATGGCTTTGAAGGTACGTCGTCGTTTAGTGCTCTCCCGCTTCAACCTGGT 477
||||||||||||||||||||||| |||||||||||||||||||| |||||||| || |||
Sbjct 421 GTGAATGCCAATGGCTTTGAAGGAACGTCGTCGTTTAGTGCTCTTCCGCTTCAGCCCGGT 480
Query 478 CCGGATCGGTCGGGTCTCTTCATGTCGGGTCCTATCGAAAGAGGAGCCACTTCAGGTCCC 537
|||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 481 CCGGATCGCTCGGGTCTCTTCATGTCCGGTCCGATCGAAAGAGGAGCCACTTCAGGTCCG 540
Query 538 TTAGACCCGTCGGCCGGAGCGATTTCGAGATCTAATTCCGCCGGCGTGCATTTCTCGGCG 597
||||||||| ||||||||| |||||||||||||||||||||||| ||||||||||| |||
Sbjct 541 TTAGACCCGCCGGCCGGAGAGATTTCGAGATCTAATTCCGCCGGTGTGCATTTCTCAGCG 600
Query 598 CCGCTCGGTGGTGTATACTCgaagaagagacggagaaagaagaagaagaGCCTTTCCTGG 657
|||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 601 CCGCTCGGTGGTGTTTACTCGAAGAAGAGACGGAAAAAGAAGAAGAAGAGCCTTTCCTGG 660
Query 658 CATCCGATTTTCGGTGGGGAAAAGAAGCAACGGCCATGGGTTCTTCCGGTGTCGAATTTC 717
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 661 CATCCGATTTTCGGCGGGGAGAAGAAGCAACGGCCATGGGTTCTTCCGGTGTCGAATTTC 720
Query 718 GTCGTCGGTGCTAAGAAGGAGAACATTGTGAGACCCGACGTCGAAGCCATGGCAGCATCT 777
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 721 GTCGTCGGTGCTAAGAAGGAGAACATTGTGAGACCCGACGTTGAAGCTATGGCAGCATCT 780
Query 778 TCCGGAGAGAACGATTTGCAGTGGGCATTGGGGAAGGCAGGAGAGGACAGAGTGCAATTA 837
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 781 TCCGGAGAGAACGATTTGCAGTGGGCATTGGGGAAGGCAGGAGAGGATAGAGTGCAATTA 840
Query 838 GCTGTTTTTGAGAAGCAAGGATGGCT-TTTCGCTGGAATCTACGACGGTTTCAACGGACC 896
|||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |||||
Sbjct 841 GCTGTTTTTGAGAAGCAAGGATGGCTCTTT-GCTGGAATCTACGACGGTTTCAATGGACC 899
Query 897 CGACGCGCCGGAGTTTTTGATGGCTAATCTCTACCGTGCTGTTCACAGTGAGTTACAAGG 956
|||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 900 CGACGCGCCGGAGTTTCTGATGGCTAATCTCTACCGTGCTGTTCATAGTGAGTTACAGGG 959
Query 957 TTTGTTCTGGGAATTGGATGAAGAAGATGATAATCCAAC-G--GTT--C-CTA-ATGAGT 1009
|||||||||||||||||| |||||||||||||||||||| | || | ||| | ||||
Sbjct 960 TTTGTTCTGGGAATTGGAGGAAGAAGATGATAATCCAACAGATATTAGCACTAGA-GAGT 1018
Query 1010 TAGAGCAACGAGGTAAAGTTGAGG-CTCAAGTCGACGAAATGGCAAGTTCGAGCTGTCCA 1068
||||||||| |||| || |||||| | || || ||||||||||||||||||||||||||
Sbjct 1019 TAGAGCAACAAGGTGAATTTGAGGAC-CATGTAAACGAAATGGCAAGTTCGAGCTGTCCA 1077
Query 1069 GCAACAGACAAGGAAGAAGACGAGATGGGAAAGAGATTGACCTCTTCTTCATTAGAGGTG 1128
|||||||| ||||||||||| ||||||||||||||||||| | |||||||||||||||
Sbjct 1078 GCAACAGAGAAGGAAGAAGAAGAGATGGGAAAGAGATTGA---CGTCTTCATTAGAGGTG 1134
Query 1129 GTGGAAGTCAAGGAGAGGAAACGGCTATGGGAGCTTCTTGCAGAGGCGCAAGCAGAGGAT 1188
|| ||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||
Sbjct 1135 GTTGAAGTCAAGGAGAGGAAACGGCTATGGGAGCTTCTGGCAGAGGCTCAAGCAGAAGAT 1194
Query 1189 GCGTTAGATCTATCAGGTTCTGATAGGTTTGCATTCTCAGTGGATGATGCTATCAGTGCA 1248
||||||||||| ||||||||||||||||||||||| || ||||||||||||||| |||||
Sbjct 1195 GCGTTAGATCTTTCAGGTTCTGATAGGTTTGCATTTTCGGTGGATGATGCTATCGGTGCA 1254
Query 1249 GGCAATGCCGCGTCTGTGGGAAGTAAAAGATGGTTGCTGTTGTCAAAATTGAAGCAGGGT 1308
|||||||| | ||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 1255 GGCAATGCTGTGTCTGTGGGAAGTAAGAGATGGTTGCTTTTGTCAAAATTGAAGCAGGGT 1314
Query 1309 TTATCTAAACAAGGAATTTCTGGGAGGAAGTTGTTCCCATGGAAGTCTGGTGTAGAGGAG 1368
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1315 TTATCTAAACAAGGAATTTCTGGGAGGAAGTTGTTCCCATGGAAGTCTGGTGTGGAGGAA 1374
Query 1369 AATGAAAATGAGGAGGTAGATAATGTTGGAGTAGAAGAACGGGTTGATAAGAGGAGGAAG 1428
||||||| |||||||||||||||||||| || |||||| ||||||||||||| ||||||
Sbjct 1375 AATGAAACGGAGGAGGTAGATAATGTTGGTGTGGAAGAAGGGGTTGATAAGAGAAGGAAG 1434
Query 1429 AGACGAAAGGCGGGTACGGTTGATCATGAGTTGGTTCTAAAGGCAATGTCAAATGGTCTT 1488
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1435 AGACGAAAGGCGGGTACCGTTGATCATGAGTTGGTTCTAAAGGCAATGTCAAATGGTCTT 1494
Query 1489 GAAGCCACAGAGCAAGCATTTCTAGAAATGACTGATAAGGTTCTTGACACCAATCCCGAG 1548
|||||||||||||||||||| ||||| ||||||||||||||||| || |||||||| |||
Sbjct 1495 GAAGCCACAGAGCAAGCATTCCTAGAGATGACTGATAAGGTTCTCGAAACCAATCCTGAG 1554
Query 1549 CTTGCATTGATGGGTTCGTGCTTACTGGTTGCACTGATGAGAGATGATGATGTGTATATA 1608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 CTTGCATTGATGGGTTCGTGCTTACTGGTTGCACTGATGAGAGATGATGATGTGTATATA 1614
Query 1609 ATGAACATAGGGGATAGTAGGGCTCTTGTTGCACAATATCAGGTTGAAGAAACGGGTGCG 1668
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 1615 ATGAACATAGGGGATAGTAGGGCTCTTGTTGCACAATATCAGGTAGAAGAAACGGGTGAG 1674
Query 1669 AGTGTGGAGACATCAGAAAGAGTAGAAGAAAGACGCAATGATGTAGACAGAGACGTTGAA 1728
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||| || |
Sbjct 1675 AGTGTGGAGACAGCAGAAAGAGTAGAAGAAAGACGCAATGATTTAGACAGAGACGATGGA 1734
Query 1729 AACAAAGAGCCTTTGGTTGTGGATAGTAGCGATAGTACAGTGAACAACGAAGCTCCTCTG 1788
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1735 AACAAAGAGCCTTTGGTCGTGGATAGTAGCGATAGTACAGTGAACAACGAAGCTCCTTTG 1794
Query 1789 CCGCAAACGAAACTGGTTGCTCTGCAGCTAACAACAGATCACAGCACGAGCATCGAGGAT 1848
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 1795 CCGCAAACGAAACTGGTTGCCCTGCAGCTAACAACAGATCACAGCACAAGCATCGAGGAT 1854
Query 1849 GAAGTAACAAGAATAAAAAACGAGCACCCGGATGACAACCATTGCATAGTGAATGACAGG 1908
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1855 GAAGTAACAAGAATAAAAAACGAGCACCCCGATGACAACCATTGCATAGTGAATGACAGG 1914
Query 1909 GTGAAAGGACGGCTTAAGGTGACCAGAGCGTTTGGAGCGGGATTCTTAAAGCAGCCAAAA 1968
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1915 GTGAAAGGACGGCTTAAGGTGACCAGAGCGTTTGGAGCGGGATTCTTAAAGCAGCCAAAA 1974
Query 1969 TTGAACGATGCTTTGCTGGAAATGTTTCGAAACGAATACATTGGTACGGATCCATACATA 2028
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1975 TTGAACGATGCTTTGCTGGAAATGTTTCGAAACGAATACATTGGTACGGATCCATACATA 2034
Query 2029 TCATGCACACCTTCCCTTCGTCACTACCGGCTAACAGAGAATGATCAGTTTATGGTTCTC 2088
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2035 TCATGCACACCTTCCCTTCGTCACTACCGGCTAACAGAGAATGATCAGTTTATGGTTCTC 2094
Query 2089 TCATCTGATGGATTGTACCAATACTTGAGCAATGGGGAAGTTGTTGCTCTTGCCATGGAG 2148
||||| |||||||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct 2095 TCATCGGATGGATTGTACCAATACTTGAGCAATGTGGAAGTTGTTTCTCTTGCCATGGAG 2154
Query 2149 AAGTTTCCAGATGGAGATCCTGCTCAACATGTTATACAGGAACTTTTAGTCCGTGCAGCC 2208
||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2155 AAGTTTCCAGATGGAGACCCTGCTCAACATGTTATACAGGAACTTCTAGTCCGTGCAGCC 2214
Query 2209 AAGAAAGCTGGAATGGATTTTCATGAACTTCTCGATATCCCGCAAGGAGATAGAAGAAAG 2268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2215 AAGAAAGCTGGAATGGATTTTCATGAACTTCTCGATATCCCGCAAGGAGATAGAAGAAAG 2274
Query 2269 TATCACGACGATTGCACTGTATTAGTGATAGCACTTGGAGGAAGCAGGATCTGGAAGTCA 2328
|||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 2275 TATCACGATGATTGCACTGTATTAGTGATAGCACTTGGAGGAAGTAGGATATGGAAGTCA 2334
Query 2329 TCAGGAAAGTACCTTTGAGGCCA-AAA--A----G--C-A-----C-AA-A-A-AA---- 2365
||||||||||| ||||||| ||| ||| | | | | | || | | ||
Sbjct 2335 TCAGGAAAGTATCTTTGAGACCATAAACCACACAGTTCGATGAAGCCAACAGATAAAAAA 2394
Query 2366 CTCTCCTTATAGATTAGCCTCTTTTGACTTAATGCAGCA-AA--TCAAGAGGGTGCCAAG 2422
| |||||||||||||| | |||||||||||||||||||| || |||| |||||||||||
Sbjct 2395 CGCTCCTTATAGATTAACTTCTTTTGACTTAATGCAGCATAAGATCAAAAGGGTGCCAAG 2454
Query 2423 TTTTCTTGCTTTTAGTTTC-TGTAGGAATTTTGGGTCAGATTAGGTGGGGG-GTTTTATA 2480
||||||||||||| ||||| | ||||||||||||||||||||||||||||| ||||||||
Sbjct 2455 TTTTCTTGCTTTTTGTTTCCT-TAGGAATTTTGGGTCAGATTAGGTGGGGGTGTTTTATA 2513
Query 2481 TTTTGTTTCTTTGTTGAATAGGGCAGGGATTGGAATAGAGGTGAAACCaaaaaaaaaaaa 2540
||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||
Sbjct 2514 TTTTGTTTCTTTGTTGAATAGGGTAGGGATTGGAATAGCGGTGAAACCAAAAACAAAAAA 2573
Query 2541 aaGGATATGTAATTTGGGGG--TGGGGACAAAAGGGTAATACATAGAACATTTTCCTCCT 2598
||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 2574 GAGGATATGTAATTTGGGGGGGTGGGGACAAAAGGGTAATATATAGAACATTTTCCTCCT 2633
Query 2599 GGGGaaaaaaaa 2610
||| ||||||||
Sbjct 2634 GGGAAAAAAAAA 2645
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 129581213769
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5