BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482499
Length=923
Score E
Sequences producing significant alignments: (Bits) Value
AT2G35360.1 | Symbols: | ubiquitin family protein | chr2:14889... 1356 0.0
> AT2G35360.1 | Symbols: | ubiquitin family protein | chr2:14889048-14890847
REVERSE LENGTH=989
Length=989
Score = 1356 bits (734), Expect = 0.0
Identities = 868/929 (93%), Gaps = 24/929 (3%)
Strand=Plus/Plus
Query 1 ATGGTGAATTCAATCGAAGAGATGAGCTCTGATTCGACCAACAATGGCACCGTCGAGATC 60
||| ||||||||| ||||||| ||||||| ||||| ||||||||||||||||||||||||
Sbjct 49 ATGATGAATTCAACCGAAGAGCTGAGCTCAGATTCAACCAACAATGGCACCGTCGAGATC 108
Query 61 ACGTACAAAACCATCGGCCCAGCTCGGCCGTCTCAAATTCGAGTGGCGTCTCATGTCAAA 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 109 ACGTACAAAACCATCGGCCCAGCTCGGCCGTCTCAAATTCGAGTGGCGTCTCATATCAAA 168
Query 121 GTTCGTGATCTGAGAAATGCAATTGCGGAAAAGGGTAAATTTCCTGTCTCAAATTTGAGG 180
|||||||| |||||||||||||||||||||||||||||||||| || |||| ||| |||
Sbjct 169 ATTCGTGATTTGAGAAATGCAATTGCGGAAAAGGGTAAATTTCCCGTTTCAACTTTAAGG 228
Query 181 ATGATTCTTCGTGGAAAGGCATTGCAAGACGAAGAAGATGGAGATGATTTATACGTTAAG 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 229 ATGATTCTTCGTGGAAAGGCATTGCAAGACGAAGAAGATGGAGATGATTTATACGTTACG 288
Query 241 CTCAAGGACCAAGATTCCTTGATCGTTGCTGTAATACCAAAGCCACCAGCTGGAGCTGAG 300
|||||||||||||||||||| || ||||||||||||||||| ||||||||||||| ||||
Sbjct 289 CTCAAGGACCAAGATTCCTTTATTGTTGCTGTAATACCAAATCCACCAGCTGGAGTTGAG 348
Query 301 ACCTTTGAGgatgatgatgatgatgatgatTTGAAGTTTAAACTCCCACCATCAGCAAGC 360
| ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 349 TCATTTGA---TGATGATGATGATGATGATTTGAAGTTTAAACTCCCACCGTCAGCAAGC 405
Query 361 CGGTGGAAGAGGAAGTTCTACTACTTTCTGCGTAACAAGTTGAAGCTTCCAGATATCATT 420
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 406 CGGTGGAAGAGGAAGTTATACTACTTTCTGCGTAACAAGTTGAAGCTGCCAGATATCATT 465
Query 421 CTTATGGGACTTTTCTCTTTAAGTCTAAAGATGTGGGTTATTATCATCCT-GTGGTTTAT 479
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 466 CTTATGGGACTTTTCTCTTTAAGTCTAAAGATGTGGGTTATTATCA-CCTTGTGGTTTAT 524
Query 480 CTTGGCGCCTATTGCACATCGGTGGGAACTGGGCCCTATATTTATACTAGGGACTGGCTT 539
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 525 CTTGGCGCCTATTGCACATCGGTGGGATCTGGGCCCTATATTTATACTAGGGACTGGATT 584
Query 540 TTCAATCATATTGCTCAATCTTGGTAAACGACAGCCTGGTGATGTCAGCGCATATTCCAT 599
||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 585 TTCAATCATCTTGCTCAATCTTGGTAAACGACAGCCTGGTGATGTTAGTGCATATTCCAT 644
Query 600 ATTCAACGAGGATTTTAGAGAGCTCCCGGGTACATATAATGCAGATCGTATAGATCGGGA 659
|||||||||||||||||||||||| || |||||||||||||||||||||||||| |||||
Sbjct 645 ATTCAACGAGGATTTTAGAGAGCTTCCAGGTACATATAATGCAGATCGTATAGACCGGGA 704
Query 660 CATACGAGCAGGCCAGATATAATGCAGAATTGCATCATCAACACCATTGCTTGGTA-GAA 718
|||||||||||||||||| ||||||| | |||||||| || |||||||||||||| ||
Sbjct 705 CATACGAGCAGGCCAGATGTAATGCATATTTGCATCA--AA-ACCATTGCTTGGTAAGA- 760
Query 719 TTCACACAACAGAAGAAAAAATACTTATCGGTTATACCCAATGAGCAACCAAAAGATCAG 778
||||||||||||| |||||| |||||| |||||||||| |||||||| |||||||
Sbjct 761 TTCACACAACAGACGAAAAA-TACTTA------ATACCCAATGTGCAACCAAGAGATCAG 813
Query 779 TTTTTTGTCCTGTCTGATTTAGACGACACAACACAAAGCATGACAGTACTTGAGACCAAA 838
||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 814 TTTTTTGTCCTGTCTGATT--GA-GACACAACACAAAGCATGACAGTACTTGAGACCAAA 870
Query 839 ATTCCTATTGATGTACATGATCTAG-T---CTTTTAGATTCCATGATCAATGGTCCGTGT 894
||||||||||||||||||||||||| | |||||| |||||||||||||||||||||||
Sbjct 871 ATTCCTATTGATGTACATGATCTAGCTAGTCTTTTAAATTCCATGATCAATGGTCCGTGT 930
Query 895 TGTACTCGAATATTGAGATTCCCTTATAT 923
|||||||||||||||||||||||||||||
Sbjct 931 TGTACTCGAATATTGAGATTCCCTTATAT 959
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45110264006
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5