BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482506
Length=1103
Score E
Sequences producing significant alignments: (Bits) Value
AT2G35410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 1670 0.0
AT2G35420.1 | Symbols: | RING/U-box superfamily protein | chr2... 62.1 1e-08
> AT2G35410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:14898324-14899750 FORWARD LENGTH=1104
Length=1104
Score = 1670 bits (904), Expect = 0.0
Identities = 1040/1106 (94%), Gaps = 7/1106 (1%)
Strand=Plus/Plus
Query 1 GTGCCAAAGCTAACAATGGCTGTTTTGGAAGCTGctctctccattttctccttctcttct 60
|||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 3 GTGCCAAAGCTAACAATGGCGGTTTTGGAAGCTTCTCTCTCCATTTTCTCCTTCTCTTCT 62
Query 61 tcttcttcttcctcaaaaccttatctcttttgtaaacggtcttcttccttcAAACCTACT 120
|||||||| || ||||||||||||||||||| |||||| ||||||||||| |||| ||||
Sbjct 63 TCTTCTTCCTCTTCAAAACCTTATCTCTTTTCTAAACGCTCTTCTTCCTTAAAACTTACT 122
Query 121 GCTCTGAGTCTTCGACTTCCCAGTAATCTCTCTCCCGTCTTCTCTCTACGTTCCGGCGGC 180
|| || ||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 123 GCCCTTAGTCTTCGAATTCCCAGCAATCTCTCTCCCGTCTTCTCTCTACGTTCCGGCAGC 182
Query 181 TATAACTCGCGGCGGCTCGTCTCCGTACTATGTTCCGTCGCGGAGAAAGAAACATCAGCG 240
||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 183 GATAACTCACGGCGGCTCGTCTCCGTACTCTGTTCCGTCGCGGAGAAAGAAACATCGGCG 242
Query 241 GAGGAAGAAACGTCGCAGGAGGAGAATACTCAAGAAACCCAGAAATCAAACCTGAAAAGG 300
|| ||||||||||||||||||||||| ||| ||||||||||||| ||||| |||||||||
Sbjct 243 GATGAAGAAACGTCGCAGGAGGAGAAGACTGAAGAAACCCAGAATTCAAATCTGAAAAGG 302
Query 301 AAGCTATTTGTATTCAATCTTCCTTGGTCTATGAGTGTAAATGACATCTCGGAGCTCTTT 360
||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 303 AAGCTTTTTGTATTCAATCTTCCTTGGTCTATGAGTGTAAATGACATTTCCGAGCTCTTT 362
Query 361 GGACAATGCGGGACTGTGAACAATGTCGAGATTATAAGGCAAAAAGATGGGAAGAACCGA 420
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 363 GGACAATGTGGGACTGTGAACAATGTCGAGATTATAAGGCAAAAAGATGGAAAGAACCGA 422
Query 421 GGATTTGCTTTTGTAACTATGGCTTCTGGAGAAGAAGCTCAAGCTGCTATTGATAAGTTC 480
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 423 GGATTTGCTTTTGTAACTATGGCTTCTGGAGAAGAAGCTCAAGCAGCTATTGATAAGTTC 482
Query 481 GATACTTCTCAAGTGTCAGGGAGGATCATAAGCGTAAACTTTGCAAGAAGGTTCAAGAAG 540
||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 483 GATACTTTTCAAGTGTCAGGGAGGATCATTAGCGTAAGCTTTGCAAGAAGGTTCAAGAAG 542
Query 541 CCTACTCCGAAACCACCCAACGATCTTCCTTCTCCTCCCCCTGGAGACACTCGTCACAAA 600
|||||||||||| |||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct 543 CCTACTCCGAAATCACCGAACGATCTTCCTTCTCCTGCCCCTGGAGACACTCGTCACAAA 602
Query 601 CTCTACGTATCTAATCTCGCTTGGAAAGCAAGGTCAACCCATCTCCGTGAGCTTTTCACT 660
|||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||
Sbjct 603 CTCTACGTATCTAATCTCGCTTGGAAAGCAAGATCAACACATCTCCGAGAGCTTTTCACT 662
Query 661 GCTGCTGATTTCAACCCGGTCTCAGCTCGGGTTGTTTTCGCTGACCCTGAAGGAAGATCT 720
||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 663 GCTGCAGATTTCAACCCGGTCTCAGCTCGGGTTGTTTTCGCTGACCCCGAAGGTAGATCT 722
Query 721 TCCGGCTATGGCTTTGTCTCATTTGCTACTAGAGAAGAAGCTGAGGATGCAATCACCAAA 780
|| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 723 TCTGGCTATGGCTTTGTCTCATTTGCTACTAGAGAAGAAGCTGAGAATGCAATCACAAAA 782
Query 781 CTCGATGGGAAGGAGATAATGGGCAGACCTATCATTCTCAAGTTTAG-CTTGAGAAGCGC 839
||| ||||||||||||||||||| |||||||||| ||| |||||||| || |||||||||
Sbjct 783 CTCAATGGGAAGGAGATAATGGGTAGACCTATCACTCTAAAGTTTAGTCT-GAGAAGCGC 841
Query 840 CAGTGAATCTGAAGATAGTGACACTGTAGAAGAC-AACAACACTTCTGAAGATGGTGACA 898
|||||||||||||||| |||||| |||||||| | |||||| ||||||||||||| ||||
Sbjct 842 CAGTGAATCTGAAGATGGTGACAGTGTAGAAG-CTAACAACGCTTCTGAAGATGGAGACA 900
Query 899 CTGTAGAAGACAAAAACACTTCTGAAGAAAA-AGTTGTGGAGTGACTCTTATTATTTTCT 957
|||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||
Sbjct 901 CTGTAGAAGACAAAAACACTTCCGAAGAAAACA-TTGTGGAGTGACTCTTATTATTTTCT 959
Query 958 CTGTTATCCAATAGAGAGCATGAGAATCTGACTACAGATCTTATTACAGTTTTGAAATAG 1017
||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 960 CTGTTATCCGATAG-GAGCATGAGAATCTGACTAGAGATCTTATTACAGTTTTGAAATAA 1018
Query 1018 CTACTGCTACAAAGAACACAAAAATGAAGATGTAACAGAATTTCACTAAACTAGACTTCA 1077
||||||||||||||||||||| |||||||||||||||||| |||| ||||||| ||||||
Sbjct 1019 CTACTGCTACAAAGAACACAATAATGAAGATGTAACAGAAATTCAGTAAACTATACTTCA 1078
Query 1078 ATCCTGCTAATGTGTGATGAATCACC 1103
||||||||||||||||||||||||||
Sbjct 1079 ATCCTGCTAATGTGTGATGAATCACC 1104
> AT2G35420.1 | Symbols: | RING/U-box superfamily protein | chr2:14899715-14900692
REVERSE LENGTH=978
Length=978
Score = 62.1 bits (33), Expect = 1e-08
Identities = 35/36 (97%), Gaps = 0/36 (0%)
Strand=Plus/Minus
Query 1068 CTAGACTTCAATCCTGCTAATGTGTGATGAATCACC 1103
||| ||||||||||||||||||||||||||||||||
Sbjct 978 CTATACTTCAATCCTGCTAATGTGTGATGAATCACC 943
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54065986965
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5