BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg482507 Length=903 Score E Sequences producing significant alignments: (Bits) Value AT2G35420.1 | Symbols: | RING/U-box superfamily protein | chr2... 1026 0.0 AT2G35410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 62.1 9e-09 > AT2G35420.1 | Symbols: | RING/U-box superfamily protein | chr2:14899715-14900692 REVERSE LENGTH=978 Length=978 Score = 1026 bits (555), Expect = 0.0 Identities = 687/748 (92%), Gaps = 20/748 (3%) Strand=Plus/Plus Query 169 TCAATACCAACTACTGATGTTTTTCCTACCGTTTCCATGCCCATCACCATAGTTTTGACC 228 ||||||||| |||||| |||||| |||| ||||||||||| ||||| ||||||||||| Sbjct 238 TCAATACCAGCTACTGCTGTTTTCCCTAGTGTTTCCATGCCTGTCACCGTAGTTTTGACC 297 Query 229 GGCGttcttctctttgtaatttttgccggattcttctctcttttcttctggcga-tttct 287 || |||||||||||||||||||| ||||||||||||||||||||||| |||| | ||||| Sbjct 298 GGTGTTCTTCTCTTTGTAATTTTCGCCGGATTCTTCTCTCTTTTCTTATGGC-AGTTTCT 356 Query 288 tctGAATCGCTTGTTTTC-AGCTTGGAATCTTCAGCAAACACCTTACGGTGACTTAATCC 346 ||||||||| || ||| | | ||||||| ||||| | |||||||||||||||| |||||| Sbjct 357 TCTGAATCGATTATTTACTA-CTTGGAACCTTCAACGAACACCTTACGGTGACCTAATCC 415 Query 347 ATGTGGCCACTCCGCCTGAAAA-ACCCGGCCTCGACCCATTTATCATCCGGTCCTTTCCC 405 |||||||||||||||||||||| | | ||||||||||| |||||||||||||||||||| Sbjct 416 ATGTGGCCACTCCGCCTGAAAATA-CTGGCCTCGACCCGTTTATCATCCGGTCCTTTCCT 474 Query 406 GTGTTCC-CTTATTCATCTGCAAC-AATGAAAAATCACGGGACGGAATGCGCTATTTGCT 463 || |||| | |||||||||||||| || ||||||||| |||||||||||||||||||||| Sbjct 475 GTATTCCAC-TATTCATCTGCAACTAA-GAAAAATCATGGGACGGAATGCGCTATTTGCT 532 Query 464 TGTCAGAGTTTTCAGATGAAGACACAGTTAGGCTCATAACGGTTTGTCGTCATCCCTTTC 523 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 533 TGTCAGAGTTTTCAGATGAAGATACAGTTAGGCTCATAACGGTTTGTCGTCATCCCTTTC 592 Query 524 ATTCAAATTGCATTGATCTTTGGTTTGAGTTACACAAGACTTGTCCTGTTTGCCGGTGTG 583 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 593 ATTCAAATTGCATTGATCTTTGGTTTGAGTTACACAAGACTTGTCCTGTTTGCCGGTGTG 652 Query 584 AGCTT-GATCCTGGCATGATCGGATCTGGAAGCCATGAATCTTTGCACAACGCAGTCACA 642 || || |||||||||||||| ||||||||||| | |||||| || |||||| |||||||| Sbjct 653 AG-TTAGATCCTGGCATGATTGGATCTGGAAGGCTTGAATCATTCCACAACACAGTCACA 711 Query 643 ATTACTATTCAGGACATAAACCATGATGAGGAAAACCCTCCTACCACAGGTTCAAGTAAA 702 ||||||||||||||||||||||||||||||||||| ||||| ||| | |||||||| ||| Sbjct 712 ATTACTATTCAGGACATAAACCATGATGAGGAAAATCCTCCAACCGCTGGTTCAAGCAAA 771 Query 703 AGGCTAATGGAAGCCTCGGCTTGGCGATTCTCGAGGTCACATTCTACTGGACATTTCATG 762 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 772 AGGCTAATAGAAGCCTCGGCTTGGCGATTCTCGAGGTCACATTCTACTGGACATTTCATG 831 Query 763 GTTAAGACTACGGATG-TCAATGTGAAGTCCAAAAGAAGGCATTACCAAACAGGAAGCTG 821 |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| Sbjct 832 GTTAAGACTACGGATGCT-AATGTGAAGTCCAAAAGAAGGCATTACCAAACAGGAAGCTG 890 Query 822 TGACTCGTTTGACGAACTTACTCGGTATGATGGAGCTGGATGG---T---TTGGTGATTC 875 || |||||| |||||||||||||||||||| ||||| |||||| | |||||||||| Sbjct 891 TGTCTCGTTCGACGAACTTACTCGGTATGAAGGAGCAGGATGGCAATGGCTTGGTGATTC 950 Query 876 ATCACACATTAGCAGGATTGAAGTCTAG 903 |||||||||||||||||||||||| ||| Sbjct 951 ATCACACATTAGCAGGATTGAAGTATAG 978 Score = 119 bits (64), Expect = 5e-26 Identities = 96/110 (87%), Gaps = 7/110 (6%) Strand=Plus/Plus Query 1 GTCACAGAAGACTCGCTCAAAATGCTAAGCAAAGCCACTTCTGTCTCTGTGACTCGGACA 60 |||||| ||||||||||||||||| |||||||||||||||||| || | ||| |||| Sbjct 11 GTCACAAAAGACTCGCTCAAAATGGTAAGCAAAGCCACTTCTG--TC--T--CTCAGACA 64 Query 61 GAGCCACGTCCTTCTCCTCATTTCTCTCTATTAACTTGAACAATAA-ACT 109 |||||| | ||||||||||||||||||||||||||||||||||| ||| Sbjct 65 TAGCCACTTTATTCTCCTCATTTCTCTCTATTAACTTGAACAATAATACT 114 > AT2G35410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr2:14898324-14899750 FORWARD LENGTH=1104 Length=1104 Score = 62.1 bits (33), Expect = 9e-09 Identities = 35/36 (97%), Gaps = 0/36 (0%) Strand=Plus/Minus Query 868 GGTGATTCATCACACATTAGCAGGATTGAAGTCTAG 903 |||||||||||||||||||||||||||||||| ||| Sbjct 1104 GGTGATTCATCACACATTAGCAGGATTGAAGTATAG 1069 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 44105581066 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5