BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg482507

Length=903
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G35420.1 | Symbols:  | RING/U-box superfamily protein | chr2...  1026    0.0  
  AT2G35410.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) fami...  62.1    9e-09


> AT2G35420.1 | Symbols:  | RING/U-box superfamily protein | chr2:14899715-14900692 
REVERSE LENGTH=978
Length=978

 Score = 1026 bits (555),  Expect = 0.0
 Identities = 687/748 (92%), Gaps = 20/748 (3%)
 Strand=Plus/Plus

Query  169  TCAATACCAACTACTGATGTTTTTCCTACCGTTTCCATGCCCATCACCATAGTTTTGACC  228
            ||||||||| |||||| |||||| ||||  |||||||||||  ||||| |||||||||||
Sbjct  238  TCAATACCAGCTACTGCTGTTTTCCCTAGTGTTTCCATGCCTGTCACCGTAGTTTTGACC  297

Query  229  GGCGttcttctctttgtaatttttgccggattcttctctcttttcttctggcga-tttct  287
            || |||||||||||||||||||| ||||||||||||||||||||||| |||| | |||||
Sbjct  298  GGTGTTCTTCTCTTTGTAATTTTCGCCGGATTCTTCTCTCTTTTCTTATGGC-AGTTTCT  356

Query  288  tctGAATCGCTTGTTTTC-AGCTTGGAATCTTCAGCAAACACCTTACGGTGACTTAATCC  346
            ||||||||| || ||| | | ||||||| ||||| | |||||||||||||||| ||||||
Sbjct  357  TCTGAATCGATTATTTACTA-CTTGGAACCTTCAACGAACACCTTACGGTGACCTAATCC  415

Query  347  ATGTGGCCACTCCGCCTGAAAA-ACCCGGCCTCGACCCATTTATCATCCGGTCCTTTCCC  405
            |||||||||||||||||||||| | | ||||||||||| |||||||||||||||||||| 
Sbjct  416  ATGTGGCCACTCCGCCTGAAAATA-CTGGCCTCGACCCGTTTATCATCCGGTCCTTTCCT  474

Query  406  GTGTTCC-CTTATTCATCTGCAAC-AATGAAAAATCACGGGACGGAATGCGCTATTTGCT  463
            || |||| | |||||||||||||| || ||||||||| ||||||||||||||||||||||
Sbjct  475  GTATTCCAC-TATTCATCTGCAACTAA-GAAAAATCATGGGACGGAATGCGCTATTTGCT  532

Query  464  TGTCAGAGTTTTCAGATGAAGACACAGTTAGGCTCATAACGGTTTGTCGTCATCCCTTTC  523
            |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  533  TGTCAGAGTTTTCAGATGAAGATACAGTTAGGCTCATAACGGTTTGTCGTCATCCCTTTC  592

Query  524  ATTCAAATTGCATTGATCTTTGGTTTGAGTTACACAAGACTTGTCCTGTTTGCCGGTGTG  583
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  ATTCAAATTGCATTGATCTTTGGTTTGAGTTACACAAGACTTGTCCTGTTTGCCGGTGTG  652

Query  584  AGCTT-GATCCTGGCATGATCGGATCTGGAAGCCATGAATCTTTGCACAACGCAGTCACA  642
            || || |||||||||||||| ||||||||||| | |||||| || |||||| ||||||||
Sbjct  653  AG-TTAGATCCTGGCATGATTGGATCTGGAAGGCTTGAATCATTCCACAACACAGTCACA  711

Query  643  ATTACTATTCAGGACATAAACCATGATGAGGAAAACCCTCCTACCACAGGTTCAAGTAAA  702
            ||||||||||||||||||||||||||||||||||| ||||| ||| | |||||||| |||
Sbjct  712  ATTACTATTCAGGACATAAACCATGATGAGGAAAATCCTCCAACCGCTGGTTCAAGCAAA  771

Query  703  AGGCTAATGGAAGCCTCGGCTTGGCGATTCTCGAGGTCACATTCTACTGGACATTTCATG  762
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  772  AGGCTAATAGAAGCCTCGGCTTGGCGATTCTCGAGGTCACATTCTACTGGACATTTCATG  831

Query  763  GTTAAGACTACGGATG-TCAATGTGAAGTCCAAAAGAAGGCATTACCAAACAGGAAGCTG  821
            |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct  832  GTTAAGACTACGGATGCT-AATGTGAAGTCCAAAAGAAGGCATTACCAAACAGGAAGCTG  890

Query  822  TGACTCGTTTGACGAACTTACTCGGTATGATGGAGCTGGATGG---T---TTGGTGATTC  875
            || |||||| |||||||||||||||||||| ||||| ||||||   |   ||||||||||
Sbjct  891  TGTCTCGTTCGACGAACTTACTCGGTATGAAGGAGCAGGATGGCAATGGCTTGGTGATTC  950

Query  876  ATCACACATTAGCAGGATTGAAGTCTAG  903
            |||||||||||||||||||||||| |||
Sbjct  951  ATCACACATTAGCAGGATTGAAGTATAG  978


 Score =  119 bits (64),  Expect = 5e-26
 Identities = 96/110 (87%), Gaps = 7/110 (6%)
 Strand=Plus/Plus

Query  1    GTCACAGAAGACTCGCTCAAAATGCTAAGCAAAGCCACTTCTGTCTCTGTGACTCGGACA  60
            |||||| ||||||||||||||||| ||||||||||||||||||  ||  |  ||| ||||
Sbjct  11   GTCACAAAAGACTCGCTCAAAATGGTAAGCAAAGCCACTTCTG--TC--T--CTCAGACA  64

Query  61   GAGCCACGTCCTTCTCCTCATTTCTCTCTATTAACTTGAACAATAA-ACT  109
             |||||| |  ||||||||||||||||||||||||||||||||||| |||
Sbjct  65   TAGCCACTTTATTCTCCTCATTTCTCTCTATTAACTTGAACAATAATACT  114


> AT2G35410.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family 
protein | chr2:14898324-14899750 FORWARD LENGTH=1104
Length=1104

 Score = 62.1 bits (33),  Expect = 9e-09
 Identities = 35/36 (97%), Gaps = 0/36 (0%)
 Strand=Plus/Minus

Query  868   GGTGATTCATCACACATTAGCAGGATTGAAGTCTAG  903
             |||||||||||||||||||||||||||||||| |||
Sbjct  1104  GGTGATTCATCACACATTAGCAGGATTGAAGTATAG  1069



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 44105581066


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5