BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482508
Length=1109
Score E
Sequences producing significant alignments: (Bits) Value
AT2G35450.1 | Symbols: | catalytics;hydrolases | chr2:14903045... 1478 0.0
> AT2G35450.1 | Symbols: | catalytics;hydrolases | chr2:14903045-14905372
REVERSE LENGTH=1208
Length=1208
Score = 1478 bits (800), Expect = 0.0
Identities = 890/934 (95%), Gaps = 4/934 (0%)
Strand=Plus/Plus
Query 87 ATCAGGACGGTGAAAATGTCGGCTATTGCTGGCTCTGACCGC-GAAACAACATCGTCTTC 145
||||||||||| |||||| ||||| ||||||| ||||| | | |||||||| |||||| |
Sbjct 129 ATCAGGACGGTAAAAATGGCGGCTTTTGCTGGGTCTGA-CTCAGAAACAACGTCGTCTAC 187
Query 146 CGCGAGAGTCATCGATTCTCATCTCCACATTTGGGCTTCTCCTCAAGAGGCAGAAACTTA 205
| ||||||| ||||||||||||||||||||||||||||||||||||||||| || || ||
Sbjct 188 CTCGAGAGTTATCGATTCTCATCTCCACATTTGGGCTTCTCCTCAAGAGGCCGAGACATA 247
Query 206 TCCTTATTTTCCCGGCCAAGAACCTACTTTGACTGGTGATGTCGATTTCTTGCTTAAGAA 265
|||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 248 TCCTTATTTTCCTGGCCAAGAACCTACTTTGACTGGTGATGTCAATTTCTTGCTTAAGAA 307
Query 266 CATGGAAGAGGCAAGAGTAGATGGAGCTCTCATTGTGCAACCCATCAATCACAAGTTTGA 325
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 308 CATGGAAGAGGCAAGAGTAGATGGAGCTCTCATTGTGCAACCCATAAATCACAAGTTTGA 367
Query 326 TCATTCTTTAGTAACAAGTGTTCTGAAGAAATACCCATCGAAGTTTGTCGGTTGTTGCCT 385
|||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 368 CCATTCTTTAGTAACAAGTGTTCTGAAGAGATACCCATCAAAGTTTGTCGGTTGTTGCCT 427
Query 386 TGCTAATCCTGCAGAAGATGGCAGTGGAATTACGCACCTTGAGAATCTTGTTTTAGAGAG 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 428 TGCTAATCCTGCAGAAGATGGCAGTGGAATTACGCACCTTGAGAATCTTGTTTTAGAGAG 487
Query 446 TAATTATCGTGCTGTTCGGTTTAATCCCTACTTGTGGCCATCGGGTCAGAAGATGACAAA 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 488 TAATTATCGTGCTGTTCGGTTTAATCCCTACTTGTGGCCATCGGGTCAGAAGATGACAAA 547
Query 506 TCCTGTTGGCAAAGCCTTGTTCTCTAAAGCAGGGGAGCTTGGTGTGCCTGTTGGCTTCAT 565
| ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 548 TGCTGTTGGTAAAGCCTTGTTCTCTAAAGCAGGGGAGCTTTGTGTGCCTGTTGGCTTCAT 607
Query 566 GTGCATGAAGGGTCTGGATCTGCACATTGCAGAAATTGAGGAACTGTGCACAGAATTTCC 625
||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 608 GTGCATGAAGGGTCTAGATCTTCACATTGCAGAAATTGAGGAACTTTGCACAGAATTTCC 667
Query 626 AAAGACAG-TAGTTTTACTAGATCACGCTGGATTCTGCAAAGTACCAGAAAATGGTGAGG 684
||||||| | |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 668 AAAGACAACT-GTTTTACTAGATCACGCTGGATTCTGCAAAGTACCAGAAAGTGGTGAGG 726
Query 685 CAAAGGTTGCTTATACTCAACTCATGAAGCTCTCTAGATTCCCACAGGTATATGTGAAAT 744
||||| |||||||| |||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 727 CAAAGCTTGCTTATTCTCAACTCATGAAGCTGTCTAGATTTCCACAGGTATATGTGAAAT 786
Query 745 TCAGTGCTCTATTCAGGATCTCAAGAACCGGCTTCCCATATCAGGACCTATCGCCTCTCC 804
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 787 TCAGTGCTCTATTCAGGATCTCAAGAACCGGCTTCCCGTATCAGGACCTATCGCCTCTCC 846
Query 805 TATCTCAACTTGTTTCCCATTTTGGGGCAAATCGTGTCATGTGGGGCAGTGACTTCCCAT 864
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 847 TATCTCAACTTGTGTCCCATTTTGGGGCAAATCGTGTCATGTGGGGCAGTGACTTCCCAT 906
Query 865 TTGTTGTTCTTGAATGTGGATACAAAGAAGCCAAAGAAGCTGTGACTATTATCGCAAAAG 924
|||||||||||||||||||||| |||||||| ||||||||||||||||| || |||||||
Sbjct 907 TTGTTGTTCTTGAATGTGGATATAAAGAAGCTAAAGAAGCTGTGACTATCATTGCAAAAG 966
Query 925 AAGCATCCTTGTCAGGTTCTCAGATGGAATGGGTTCTGGGAAAGACTCTGATGCAGCTCT 984
|||||||||||||| ||||| ||||||| ||| |||||||||||||||||||||||||||
Sbjct 967 AAGCATCCTTGTCAAGTTCTGAGATGGACTGGATTCTGGGAAAGACTCTGATGCAGCTCT 1026
Query 985 TCCCTGGACAATGGGTTCTTCCTTGAGAGGCTTG 1018
||||||||||||||||||||||||||||||||||
Sbjct 1027 TCCCTGGACAATGGGTTCTTCCTTGAGAGGCTTG 1060
Score = 154 bits (83), Expect = 2e-36
Identities = 88/90 (98%), Gaps = 1/90 (1%)
Strand=Plus/Plus
Query 1 ATGGCTGTGACTCTGAGATTAACGAATTCTTTAGCATTTTCCAGTCATCCTTTAACGTCG 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 12 ATGGCTGTGACTCTGAGATTAACGAATTCTTTAGCATTTTCCAGTCATCCTCTAACGTCG 71
Query 61 TCCGTACTGTTCCGAGGAAGCAAATC-ATC 89
|||||||||||||||||||||||||| |||
Sbjct 72 TCCGTACTGTTCCGAGGAAGCAAATCGATC 101
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54367190235
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5