BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482509
Length=748
Score E
Sequences producing significant alignments: (Bits) Value
AT2G35470.1 | Symbols: | unknown protein; Has 25 Blast hits to... 856 0.0
> AT2G35470.1 | Symbols: | unknown protein; Has 25 Blast hits
to 25 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr2:14908844-14909863 REVERSE
LENGTH=817
Length=817
Score = 856 bits (463), Expect = 0.0
Identities = 625/700 (89%), Gaps = 24/700 (3%)
Strand=Plus/Plus
Query 62 CATACTTTCTCTCTCTGTCGGCGATGCAGAGGCTATCGTTAGACTCATCAGCTTCGAAGC 121
||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 122 CAT-CTTTCTCTCTCTGTCGGCGATGCAGAGGATATCGTTAGACTCATCAGCTTCGAAGC 180
Query 122 TCCATAGCTATGGAGGACGAAAGGACGATACCTATGACATCGATGACTTGAAACCAGTC- 180
|||||||||||||||||||||||||||||||||| || || |||||||||||||||| |
Sbjct 181 TCCATAGCTATGGAGGACGAAAGGACGATACCTACGATATTGATGACTTGAAACCAG-CT 239
Query 181 TCATCTTCTCCTTCTTCGTCGTCGTCCGCGGCAGATTACGACGATCACGAGCTCAAGGAC 240
|| |||||||||||||||||||| ||||| | |||||||||||||||||||||||| |||
Sbjct 240 TCCTCTTCTCCTTCTTCGTCGTCATCCGCAGTAGATTACGACGATCACGAGCTCAAAGAC 299
Query 241 TTTAGGCCGCGACGGTTATCATCGCTGCAATCGCCTTTCGCGACAACGAATCAGAAACAA 300
|||| ||||||||||||||||||| ||||||| ||||| | || |||||||||||||||
Sbjct 300 TTTAAGCCGCGACGGTTATCATCGTTGCAATCTCCTTTTGTTACGACGAATCAGAAACAA 359
Query 301 GAGAAGCTTGTTCACTTCATTCCGATTCTCACTCTCATCTGCTTTATCATCCTTTACCTC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 GAGAAGCTTGTTCACTTCATTCCGATTCTCACTCTCATCTGCTTTATCATCCTTTACCTC 419
Query 361 ACTTCTTACGCTCCGTCGCAATCAGATTTGGCTCAGTTTAATGGATTCATGCGTCCTTCG 420
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 ACTTCTTACGCTCCGTCTCAATCAGATTTGGCTCAGTTTAATGGATTCATGCGTCCTTCG 479
Query 421 AAACATCTAGAATC--C-GATGAAAATGGCGA--AA-TATCTGGATTTATCAGAGCCGAT 474
|||||||||||||| | || ||||||||||| || | |||||||||||||||||||||
Sbjct 480 AAACATCTAGAATCATCCGACGAAAATGGCGACGAAATTTCTGGATTTATCAGAGCCGAT 539
Query 475 ACACTAGCCATCCGTAGTAGCGTAAGGAATCTGCAAGAGACGGAAAGCTTTGCCG-CGAA 533
|| ||| ||||||||||||| ||| | || || ||||||||||||||||| | | ||||
Sbjct 540 ACTCTATCCATCCGTAGTAGTGTACGAAACCTACAAGAGACGGAAAGCTTCAC-GACGAA 598
Query 534 ATCACTTCCCCGTCGCAGGACCTCTCACCGGAAAACCGCCGATTTCTAGCTATCTCGATC 593
|||||||||||||||| |||| |||||||||||||||||||| ||||||| ||| | |||
Sbjct 599 ATCACTTCCCCGTCGCCGGACTTCTCACCGGAAAACCGCCGACTTCTAGCAATCGCAATC 658
Query 594 TAAATTTATCTTCCTCGCATTGCATGTTGATTTGTT--CGTTCGAATTAAAATATTACGA 651
| ||||| | ||| |||||| |||||| |||||||| | ||| |||||||||||| |||
Sbjct 659 TTAATTTTTATTCGTCGCATCGCATGTCGATTTGTTTAC-TTCCAATTAAAATATTGCGA 717
Query 652 TTCGCGTTTCTGTTATAACTAA-CTAAATGGATAGAAAGATAAAATCGAATGTAAGCCTC 710
||||||||||||||||||| | | ||| || ||| ||||||||||| || ||||
Sbjct 718 GTCGCGTTTCTGTTATAACTGATCGAAA-GGC-AGA----TAAAATCGAATAAAA-CCTC 770
Query 711 GCCGCCGATGGAATTA-ACC-GTCATGCTAGAGTGCGCTG 748
|||||||||| ||||| | | ||||||||||||| |||||
Sbjct 771 GCCGCCGATGAAATTATAACTGTCATGCTAGAGTACGCTG 810
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36319288281
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5